Wall clock time and date at job start Tue Mar 31 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00056 * 2 1 4 4 C 1.50700 * 109.47091 * 270.00621 * 3 2 1 5 5 C 1.41385 * 126.58187 * 90.00526 * 4 3 2 6 6 C 1.34512 * 106.83926 * 180.25995 * 5 4 3 7 7 O 1.34305 * 108.42433 * 359.63135 * 6 5 4 8 8 C 1.34305 * 109.47225 * 0.37505 * 7 6 5 9 9 C 1.34777 * 119.99861 * 180.02562 * 2 1 3 10 10 O 1.21581 * 119.99981 * 179.97438 * 9 2 1 11 11 N 1.34778 * 120.00004 * 359.97438 * 9 2 1 12 12 C 1.46506 * 119.99883 * 180.02562 * 11 9 2 13 13 C 1.52994 * 109.46905 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47431 * 300.00099 * 13 12 11 15 15 C 1.53007 * 109.47289 * 60.00260 * 13 12 11 16 16 C 1.53001 * 109.46997 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.47001 * 180.02562 * 16 13 12 18 18 H 1.08002 * 120.00115 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99663 * 179.97438 * 17 16 13 20 20 N 1.31510 * 120.00353 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99814 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47125 * 59.99763 * 21 19 17 23 23 H 1.48499 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47256 * 299.99854 * 21 19 17 25 25 H 1.08991 * 109.47494 * 89.99745 * 1 2 3 26 26 H 1.08997 * 109.46879 * 209.99833 * 1 2 3 27 27 H 1.09005 * 109.46701 * 329.99324 * 1 2 3 28 28 H 1.09005 * 109.47105 * 150.00558 * 3 2 1 29 29 H 1.09000 * 109.47047 * 30.00720 * 3 2 1 30 30 H 1.08002 * 126.57514 * 359.97438 * 5 4 3 31 31 H 1.07998 * 125.78467 * 179.77218 * 6 5 4 32 32 H 1.08000 * 125.78555 * 179.79179 * 8 7 6 33 33 H 0.97000 * 120.00150 * 0.02562 * 11 9 2 34 34 H 1.09002 * 109.46897 * 299.99902 * 12 11 9 35 35 H 1.08997 * 109.46916 * 60.00575 * 12 11 9 36 36 H 1.09003 * 109.46860 * 59.99920 * 14 13 12 37 37 H 1.08999 * 109.47305 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.46879 * 299.99967 * 14 13 12 39 39 H 1.08995 * 109.47226 * 59.99818 * 15 13 12 40 40 H 1.09002 * 109.47350 * 180.02562 * 15 13 12 41 41 H 1.09007 * 109.46620 * 299.99403 * 15 13 12 42 42 H 1.09002 * 109.46764 * 299.99741 * 16 13 12 43 43 H 1.09000 * 109.47339 * 60.00017 * 16 13 12 44 44 H 0.96998 * 120.00108 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 6 1.6057 2.5148 -2.2151 6 6 2.2073 2.6484 -3.4107 7 8 3.3671 1.9718 -3.3803 8 6 3.5172 1.3945 -2.1769 9 6 2.1389 -1.1672 -0.0005 10 8 3.3547 -1.1672 -0.0010 11 7 1.4649 -2.3344 -0.0005 12 6 2.1975 -3.6032 -0.0005 13 6 1.2032 -4.7660 -0.0012 14 6 0.3230 -4.6853 1.2477 15 6 0.3241 -4.6847 -1.2508 16 6 1.9682 -6.0911 -0.0005 17 6 0.9888 -7.2365 -0.0018 18 1 -0.0730 -7.0391 -0.0025 19 6 1.4485 -8.5364 -0.0020 20 7 2.7414 -8.7768 -0.0016 21 14 0.2345 -9.9563 -0.0029 22 1 -0.6188 -9.8772 -1.2156 23 1 0.9770 -11.2423 -0.0024 24 1 -0.6196 -9.8780 1.2094 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 3.1500 1.1383 0.5138 29 1 1.6085 2.0283 0.5139 30 1 0.6583 2.9411 -1.9200 31 1 1.8239 3.2070 -4.2517 32 1 4.3541 0.7855 -1.8686 33 1 0.4949 -2.3344 -0.0005 34 1 2.8241 -3.6609 -0.8905 35 1 2.8240 -3.6610 0.8895 36 1 -0.2219 -3.7413 1.2477 37 1 -0.3850 -5.5140 1.2475 38 1 0.9494 -4.7433 2.1379 39 1 0.9510 -4.7423 -2.1405 40 1 -0.3846 -5.5130 -1.2510 41 1 -0.2210 -3.7407 -1.2507 42 1 2.5955 -6.1489 -0.8901 43 1 2.5942 -6.1488 0.8899 44 1 3.0647 -9.6913 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358705253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:47 Heat of formation + Delta-G solvation = -20.487045 kcal Electronic energy + Delta-G solvation = -23906.164215 eV Core-core repulsion = 20439.382480 eV Total energy + Delta-G solvation = -3466.781735 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.66032 -40.04325 -37.35792 -35.70351 -33.88768 -33.00082 -31.96270 -30.04342 -27.54236 -27.17896 -26.59182 -26.50101 -25.08508 -22.74570 -21.71645 -20.76756 -19.71906 -18.68526 -17.63858 -17.40130 -16.47373 -16.23110 -15.81520 -15.58704 -14.82464 -14.59197 -14.17578 -14.08288 -13.95536 -13.25300 -13.11909 -13.01806 -12.96125 -12.83529 -12.62512 -12.43798 -12.08284 -12.04816 -11.50584 -11.13608 -10.99456 -10.86463 -10.61931 -10.37869 -10.25580 -10.13825 -9.85871 -9.81119 -9.18939 -8.93375 -8.92394 -8.68521 -8.44511 -8.34666 -5.98787 -4.00167 1.64630 2.26685 3.03024 3.04794 3.32468 3.37971 3.39089 3.40078 4.14165 4.46124 4.65018 4.68823 4.91743 4.99257 5.16891 5.25896 5.36588 5.47826 5.50052 5.53392 5.60867 5.66490 5.76666 5.86013 6.04102 6.18778 6.22097 6.28252 6.33843 6.43136 6.44460 6.61911 6.63899 6.82529 6.97032 7.03552 7.08031 7.08720 7.16102 7.65471 7.78254 7.99781 8.12892 8.41720 8.78727 9.04425 9.62782 11.12671 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029115 B = 0.002945 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.473630 B = 9505.266716 C = 9704.517760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.633 5.633 3 C 0.204 3.796 4 C -0.207 4.207 5 C -0.202 4.202 6 C -0.051 4.051 7 O -0.179 6.179 8 C -0.007 4.007 9 C 0.703 3.297 10 O -0.593 6.593 11 N -0.736 5.736 12 C 0.146 3.854 13 C -0.073 4.073 14 C -0.125 4.125 15 C -0.126 4.126 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.145 0.855 31 H 0.199 0.801 32 H 0.205 0.795 33 H 0.394 0.606 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.027 0.973 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 23.031 -2.120 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.371 5.371 3 C 0.081 3.919 4 C -0.210 4.210 5 C -0.222 4.222 6 C -0.119 4.119 7 O -0.075 6.075 8 C -0.076 4.076 9 C 0.404 3.596 10 O -0.472 6.472 11 N -0.392 5.392 12 C 0.022 3.978 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.163 0.837 31 H 0.216 0.784 32 H 0.222 0.778 33 H 0.230 0.770 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.404 22.826 -2.338 23.364 hybrid contribution -1.381 -0.849 0.029 1.622 sum -5.785 21.977 -2.308 22.842 Atomic orbital electron populations 1.21686 0.80123 1.02751 1.01607 1.47059 1.06135 1.04813 1.79054 1.19489 0.98053 0.83569 0.90778 1.20875 0.96555 1.04086 0.99460 1.21692 1.01989 1.04153 0.94351 1.23967 0.86467 1.01096 1.00348 1.84096 1.36716 1.52428 1.34218 1.24160 1.01600 0.99492 0.82379 1.15943 0.85392 0.80398 0.77848 1.90871 1.11591 1.86307 1.58399 1.45527 1.09945 1.04968 1.78807 1.21489 0.94348 0.80277 1.01643 1.20916 0.95365 0.96023 0.95007 1.21749 0.99607 0.99555 0.97361 1.21748 0.99605 0.99570 0.97358 1.19079 0.94983 0.88477 0.97513 1.21148 0.92903 0.90553 1.50401 0.92331 1.25009 0.94965 0.98928 0.95561 1.69952 1.12477 1.20192 1.50767 0.86715 0.81238 0.81858 0.78499 1.20335 1.21401 1.20345 0.92911 0.91470 0.91010 0.89002 0.89891 0.83749 0.78449 0.77796 0.76962 0.92071 0.92013 0.95464 0.91470 0.93339 0.93373 0.91484 0.95436 0.96328 0.96309 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.25 59.85 0.61 1.31 16 2 N -0.63 -7.54 2.86 -188.74 -0.54 -8.08 16 3 C 0.20 2.15 5.96 -5.19 -0.03 2.12 16 4 C -0.21 -2.30 5.75 -104.74 -0.60 -2.90 16 5 C -0.20 -1.90 10.87 -39.70 -0.43 -2.33 16 6 C -0.05 -0.47 12.09 29.42 0.36 -0.12 16 7 O -0.18 -2.10 10.65 5.70 0.06 -2.04 16 8 C -0.01 -0.09 12.01 29.42 0.35 0.26 16 9 C 0.70 11.11 8.28 -86.92 -0.72 10.39 16 10 O -0.59 -11.38 15.92 5.29 0.08 -11.29 16 11 N -0.74 -11.23 4.82 -65.23 -0.31 -11.55 16 12 C 0.15 2.65 4.56 -4.04 -0.02 2.64 16 13 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 14 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 15 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 16 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 17 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 18 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.55 6.36 -51.93 -0.33 0.22 16 27 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 28 H 0.09 1.07 7.42 -51.93 -0.39 0.69 16 29 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.21 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.39 5.16 3.89 -40.82 -0.16 5.00 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 37 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -32.46 357.52 -6.80 -39.26 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.76 Total: 3.41 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.44 Total: -5.53 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.12 Total: -45.38 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.15 Total: -13.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.46 -6.80 -39.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358705253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.771 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds