Wall clock time and date at job start Tue Mar 31 2020 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00056 * 2 1 4 4 C 1.50700 * 109.47091 * 270.00621 * 3 2 1 5 5 C 1.41385 * 126.58187 * 90.00526 * 4 3 2 6 6 C 1.34512 * 106.83926 * 180.25995 * 5 4 3 7 7 O 1.34305 * 108.42433 * 359.63135 * 6 5 4 8 8 C 1.34305 * 109.47225 * 0.37505 * 7 6 5 9 9 C 1.34777 * 119.99861 * 180.02562 * 2 1 3 10 10 O 1.21581 * 119.99981 * 179.97438 * 9 2 1 11 11 N 1.34778 * 120.00004 * 359.97438 * 9 2 1 12 12 C 1.46506 * 119.99883 * 180.02562 * 11 9 2 13 13 C 1.52994 * 109.46905 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47431 * 300.00099 * 13 12 11 15 15 C 1.53007 * 109.47289 * 60.00260 * 13 12 11 16 16 C 1.53001 * 109.46997 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.47001 * 180.02562 * 16 13 12 18 18 H 1.08002 * 120.00115 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99663 * 179.97438 * 17 16 13 20 20 N 1.31510 * 120.00353 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99814 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47125 * 59.99763 * 21 19 17 23 23 H 1.48499 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47256 * 299.99854 * 21 19 17 25 25 H 1.08991 * 109.47494 * 89.99745 * 1 2 3 26 26 H 1.08997 * 109.46879 * 209.99833 * 1 2 3 27 27 H 1.09005 * 109.46701 * 329.99324 * 1 2 3 28 28 H 1.09005 * 109.47105 * 150.00558 * 3 2 1 29 29 H 1.09000 * 109.47047 * 30.00720 * 3 2 1 30 30 H 1.08002 * 126.57514 * 359.97438 * 5 4 3 31 31 H 1.07998 * 125.78467 * 179.77218 * 6 5 4 32 32 H 1.08000 * 125.78555 * 179.79179 * 8 7 6 33 33 H 0.97000 * 120.00150 * 0.02562 * 11 9 2 34 34 H 1.09002 * 109.46897 * 299.99902 * 12 11 9 35 35 H 1.08997 * 109.46916 * 60.00575 * 12 11 9 36 36 H 1.09003 * 109.46860 * 59.99920 * 14 13 12 37 37 H 1.08999 * 109.47305 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.46879 * 299.99967 * 14 13 12 39 39 H 1.08995 * 109.47226 * 59.99818 * 15 13 12 40 40 H 1.09002 * 109.47350 * 180.02562 * 15 13 12 41 41 H 1.09007 * 109.46620 * 299.99403 * 15 13 12 42 42 H 1.09002 * 109.46764 * 299.99741 * 16 13 12 43 43 H 1.09000 * 109.47339 * 60.00017 * 16 13 12 44 44 H 0.96998 * 120.00108 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 6 1.6057 2.5148 -2.2151 6 6 2.2073 2.6484 -3.4107 7 8 3.3671 1.9718 -3.3803 8 6 3.5172 1.3945 -2.1769 9 6 2.1389 -1.1672 -0.0005 10 8 3.3547 -1.1672 -0.0010 11 7 1.4649 -2.3344 -0.0005 12 6 2.1975 -3.6032 -0.0005 13 6 1.2032 -4.7660 -0.0012 14 6 0.3230 -4.6853 1.2477 15 6 0.3241 -4.6847 -1.2508 16 6 1.9682 -6.0911 -0.0005 17 6 0.9888 -7.2365 -0.0018 18 1 -0.0730 -7.0391 -0.0025 19 6 1.4485 -8.5364 -0.0020 20 7 2.7414 -8.7768 -0.0016 21 14 0.2345 -9.9563 -0.0029 22 1 -0.6188 -9.8772 -1.2156 23 1 0.9770 -11.2423 -0.0024 24 1 -0.6196 -9.8780 1.2094 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5140 28 1 3.1500 1.1383 0.5138 29 1 1.6085 2.0283 0.5139 30 1 0.6583 2.9411 -1.9200 31 1 1.8239 3.2070 -4.2517 32 1 4.3541 0.7855 -1.8686 33 1 0.4949 -2.3344 -0.0005 34 1 2.8241 -3.6609 -0.8905 35 1 2.8240 -3.6610 0.8895 36 1 -0.2219 -3.7413 1.2477 37 1 -0.3850 -5.5140 1.2475 38 1 0.9494 -4.7433 2.1379 39 1 0.9510 -4.7423 -2.1405 40 1 -0.3846 -5.5130 -1.2510 41 1 -0.2210 -3.7407 -1.2507 42 1 2.5955 -6.1489 -0.8901 43 1 2.5942 -6.1488 0.8899 44 1 3.0647 -9.6913 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358705253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:47 Heat of formation + Delta-G solvation = -40.527413 kcal Electronic energy + Delta-G solvation = -23907.033231 eV Core-core repulsion = 20439.382480 eV Total energy + Delta-G solvation = -3467.650751 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.45382 -41.25428 -38.86410 -36.79653 -35.34196 -34.32292 -33.51253 -30.82440 -29.13110 -28.33722 -27.96292 -27.83257 -26.33969 -24.60626 -22.44610 -21.74034 -20.86102 -20.01219 -18.81655 -18.38942 -18.34300 -17.43951 -16.81266 -16.67751 -16.47881 -15.71188 -15.47172 -15.41905 -15.16334 -14.59496 -14.36464 -14.30668 -14.01466 -13.93194 -13.66478 -13.62610 -13.41457 -13.14516 -12.83001 -12.74510 -12.57596 -12.32588 -12.29713 -12.21402 -11.98908 -11.53126 -11.36764 -10.99473 -10.86542 -10.65661 -10.49659 -10.18232 -9.58277 -9.42867 -8.12727 -6.20831 0.82364 1.42986 1.44911 1.45619 1.52834 2.01841 2.16613 2.31375 2.45415 3.10115 3.21609 3.88461 3.97735 3.98379 4.09668 4.19645 4.22492 4.30185 4.50658 4.63899 4.69528 4.72041 4.73780 4.78168 4.83653 4.91822 4.96623 5.09197 5.12394 5.13661 5.27110 5.39969 5.49433 5.50514 5.54032 5.54492 5.60115 5.63905 5.81142 5.90640 5.93404 6.22715 6.31677 6.93646 7.00484 7.46907 7.58480 8.99754 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029115 B = 0.002945 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.473630 B = 9505.266716 C = 9704.517760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.624 5.624 3 C 0.202 3.798 4 C -0.208 4.208 5 C -0.205 4.205 6 C -0.051 4.051 7 O -0.197 6.197 8 C -0.041 4.041 9 C 0.696 3.304 10 O -0.635 6.635 11 N -0.725 5.725 12 C 0.161 3.839 13 C -0.064 4.064 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.041 3.959 17 C -0.514 4.514 18 H 0.074 0.926 19 C -0.005 4.005 20 N -0.939 5.939 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.266 1.266 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.174 0.826 31 H 0.235 0.765 32 H 0.192 0.808 33 H 0.408 0.592 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.034 0.966 40 H 0.057 0.943 41 H 0.066 0.934 42 H -0.016 1.016 43 H -0.014 1.014 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 25.030 -2.174 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.361 5.361 3 C 0.079 3.921 4 C -0.211 4.211 5 C -0.224 4.224 6 C -0.117 4.117 7 O -0.093 6.093 8 C -0.110 4.110 9 C 0.397 3.603 10 O -0.517 6.517 11 N -0.383 5.383 12 C 0.036 3.964 13 C -0.065 4.065 14 C -0.176 4.176 15 C -0.177 4.177 16 C 0.003 3.997 17 C -0.552 4.552 18 H 0.092 0.908 19 C -0.202 4.202 20 N -0.581 5.581 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.190 1.190 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.192 0.808 31 H 0.251 0.749 32 H 0.208 0.792 33 H 0.247 0.753 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.003 0.997 43 H 0.005 0.995 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.280 24.872 -2.389 26.322 hybrid contribution -0.172 -1.360 0.020 1.371 sum -8.452 23.511 -2.369 25.096 Atomic orbital electron populations 1.21992 0.77417 1.04738 1.02711 1.47113 1.07771 1.03688 1.77500 1.19663 0.97968 0.83706 0.90760 1.21066 0.96468 1.03934 0.99611 1.22010 1.02805 1.03740 0.93889 1.24810 0.85257 1.00042 1.01635 1.84079 1.38158 1.52990 1.34100 1.24137 1.02451 1.01076 0.83316 1.16173 0.85020 0.81407 0.77723 1.90850 1.13728 1.87034 1.60108 1.45187 1.10325 1.03809 1.78986 1.21038 0.93914 0.81623 0.99776 1.20713 0.95397 0.93211 0.97141 1.21674 0.98984 1.01377 0.95615 1.21672 0.98990 1.01322 0.95675 1.18956 0.94598 0.91797 0.94311 1.21567 0.93811 0.90987 1.48865 0.90817 1.25960 0.96658 1.02153 0.95447 1.70118 1.14767 1.20639 1.52528 0.85591 0.78853 0.77939 0.79205 1.19111 1.21775 1.19047 0.92159 0.90853 0.87783 0.90999 0.86138 0.80849 0.74874 0.79153 0.75310 0.94263 0.93870 0.91343 0.92412 0.94414 0.94698 0.92369 0.91474 0.99741 0.99549 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.25 127.77 1.31 2.24 16 2 N -0.62 -13.45 2.86 -869.32 -2.48 -15.93 16 3 C 0.20 3.88 5.96 85.63 0.51 4.39 16 4 C -0.21 -4.35 5.75 -19.94 -0.11 -4.46 16 5 C -0.21 -3.22 10.87 22.19 0.24 -2.98 16 6 C -0.05 -0.81 12.09 66.97 0.81 0.00 16 7 O -0.20 -4.57 10.65 -2.52 -0.03 -4.60 16 8 C -0.04 -1.02 12.01 66.97 0.80 -0.21 16 9 C 0.70 21.55 8.28 179.05 1.48 23.04 16 10 O -0.64 -25.21 15.92 -3.97 -0.06 -25.27 16 11 N -0.73 -21.21 4.82 -478.54 -2.31 -23.52 16 12 C 0.16 6.01 4.56 86.38 0.39 6.40 16 13 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 14 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 15 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 16 C 0.04 2.11 4.04 29.85 0.12 2.23 16 17 C -0.51 -27.61 7.65 25.60 0.20 -27.42 16 18 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 19 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 20 N -0.94 -57.54 13.29 21.45 0.28 -57.25 16 21 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.85 6.36 -2.39 -0.02 0.84 16 27 H 0.10 0.70 7.89 -2.38 -0.02 0.68 16 28 H 0.07 1.68 7.42 -2.38 -0.02 1.66 16 29 H 0.12 1.41 7.89 -2.39 -0.02 1.39 16 30 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.24 1.67 8.06 -2.91 -0.02 1.64 16 32 H 0.19 4.98 8.06 -2.91 -0.02 4.96 16 33 H 0.41 9.36 3.89 -92.71 -0.36 9.00 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 37 H 0.06 2.05 6.62 -2.39 -0.02 2.03 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 2.09 6.62 -2.39 -0.02 2.08 16 41 H 0.07 1.74 6.86 -2.38 -0.02 1.73 16 42 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 43 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 44 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -74.44 357.52 5.41 -69.03 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.63 Total: 17.96 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 7.35 Total: -6.00 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -4.51 Total: -96.70 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.09 Total: -29.87 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -74.44 5.41 -69.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358705253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.503 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds