Wall clock time and date at job start Tue Mar 31 2020 07:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47231 * 2 1 4 4 C 1.53001 * 109.47244 * 119.99988 * 2 1 3 5 5 H 1.09010 * 109.48935 * 59.96483 * 4 2 1 6 6 C 1.53087 * 109.48345 * 179.97438 * 4 2 1 7 7 C 1.53179 * 109.16256 * 177.58999 * 6 4 2 8 8 H 1.08999 * 109.54310 * 183.15331 * 7 6 4 9 9 C 1.53005 * 109.54293 * 62.89088 * 7 6 4 10 10 C 1.50701 * 109.47191 * 175.44323 * 9 7 6 11 11 O 1.21297 * 119.99927 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.37097 * 120.00231 * 180.02562 * 12 10 9 14 14 H 1.07994 * 120.00073 * 322.47408 * 13 12 10 15 15 C 1.38949 * 120.00260 * 142.47353 * 13 12 10 16 16 N 1.31414 * 120.00221 * 157.59067 * 15 13 12 17 17 Si 1.86804 * 119.99873 * 337.59410 * 15 13 12 18 18 H 1.48502 * 109.47390 * 95.70357 * 17 15 13 19 19 H 1.48504 * 109.46966 * 215.70573 * 17 15 13 20 20 H 1.48500 * 109.47106 * 335.70086 * 17 15 13 21 21 C 1.46505 * 119.99948 * 359.97438 * 12 10 9 22 22 C 1.47195 * 109.47137 * 83.79913 * 21 12 10 23 23 N 7.17583 * 114.50397 * 170.68761 * 2 1 3 24 24 C 1.53179 * 109.04058 * 303.02150 * 7 6 4 25 25 C 1.53097 * 109.21267 * 56.94935 * 24 7 6 26 26 O 1.42903 * 109.48097 * 299.94337 * 4 2 1 27 27 H 1.09003 * 109.46947 * 299.99890 * 1 2 3 28 28 H 1.08999 * 109.46602 * 59.99756 * 1 2 3 29 29 H 1.09000 * 109.47540 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47165 * 239.99606 * 2 1 3 31 31 H 1.08999 * 109.47527 * 299.99677 * 3 2 1 32 32 H 1.09003 * 109.47066 * 60.00182 * 3 2 1 33 33 H 1.09004 * 109.46872 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.52058 * 57.69080 * 6 4 2 35 35 H 1.08994 * 109.57800 * 297.52840 * 6 4 2 36 36 H 1.09003 * 109.46815 * 295.44122 * 9 7 6 37 37 H 1.08993 * 109.46767 * 55.44169 * 9 7 6 38 38 H 0.96992 * 120.00016 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.46871 * 203.80399 * 21 12 10 40 40 H 1.09005 * 109.47091 * 323.79828 * 21 12 10 41 41 H 1.08994 * 109.52183 * 176.88478 * 24 7 6 42 42 H 1.09001 * 109.52160 * 297.01627 * 24 7 6 43 43 H 1.08999 * 109.48087 * 62.40242 * 25 24 7 44 44 H 1.08996 * 109.47819 * 182.44375 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6763 -1.7489 1.2499 6 6 3.5709 -0.7220 1.2492 7 6 4.0734 -1.3921 2.5316 8 1 5.1620 -1.3461 2.5646 9 6 3.6201 -2.8533 2.5571 10 6 4.2082 -3.5408 3.7623 11 8 4.9203 -2.9230 4.5256 12 7 3.9438 -4.8423 3.9915 13 6 4.4784 -5.4676 5.0882 14 1 5.4811 -5.2290 5.4105 15 6 3.7301 -6.4084 5.7851 16 7 4.3338 -7.3099 6.5265 17 14 1.8658 -6.3917 5.6679 18 1 1.4264 -7.3563 4.6278 19 1 1.2840 -6.7779 6.9786 20 1 1.4048 -5.0277 5.3045 21 6 3.0842 -5.5885 3.0693 22 6 3.8859 -6.0711 1.9331 23 7 4.5062 -6.4435 1.0566 24 6 3.4925 -0.6542 3.7418 25 6 1.9645 -0.6548 3.6463 26 8 1.5649 -0.0470 2.4162 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 3.9356 0.3044 1.2076 35 1 3.9358 -1.2736 0.3829 36 1 2.5322 -2.8952 2.6097 37 1 3.9597 -3.3548 1.6509 38 1 3.8114 -7.9669 7.0126 39 1 2.6439 -6.4386 3.5905 40 1 2.2911 -4.9363 2.7034 41 1 3.8004 -1.1581 4.6579 42 1 3.8565 0.3732 3.7511 43 1 1.5987 -1.6811 3.6789 44 1 1.5479 -0.0934 4.4826 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358975296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:55 Heat of formation + Delta-G solvation = -57.191244 kcal Electronic energy + Delta-G solvation = -25058.247433 eV Core-core repulsion = 21589.874085 eV Total energy + Delta-G solvation = -3468.373349 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27447 -38.82713 -36.40858 -35.39040 -34.83488 -34.05572 -32.26779 -29.98739 -28.67959 -27.79148 -27.18520 -25.19527 -24.07678 -23.42024 -20.31721 -19.83479 -18.72525 -18.08882 -16.80143 -16.57521 -16.12694 -15.81190 -15.53855 -15.11267 -14.64311 -14.30556 -14.13533 -13.84481 -13.60336 -13.46860 -13.25736 -12.98552 -12.72195 -12.57360 -12.38810 -12.26149 -12.03473 -11.79096 -11.70561 -11.51173 -11.46462 -11.22393 -11.02446 -10.88644 -10.85047 -10.70857 -10.54170 -10.28695 -10.08478 -9.95253 -9.31081 -9.15598 -8.64841 -8.09838 -6.55026 -4.16157 2.84889 2.96412 3.04883 3.09529 3.18889 3.48627 3.85603 3.97478 4.23718 4.42140 4.59965 4.75175 4.86692 4.95224 4.96726 5.07867 5.12946 5.24668 5.30742 5.36510 5.43458 5.51094 5.55519 5.59584 5.64442 5.74024 5.77325 5.77785 5.79490 5.84544 5.86232 6.00678 6.03497 6.21405 6.22436 6.31577 6.41433 6.49205 6.61415 7.32644 7.36827 7.90133 8.08893 8.27934 8.76498 9.09705 9.50355 10.56663 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.004759 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.163783 B = 5882.535706 C = 6043.687000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.093 3.907 5 H 0.057 0.943 6 C -0.148 4.148 7 C -0.068 4.068 8 H 0.081 0.919 9 C -0.145 4.145 10 C 0.477 3.523 11 O -0.542 6.542 12 N -0.464 5.464 13 C -0.325 4.325 14 H 0.109 0.891 15 C 0.063 3.937 16 N -0.853 5.853 17 Si 0.859 3.141 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.256 1.256 21 C 0.179 3.821 22 C 0.205 3.795 23 N -0.441 5.441 24 C -0.154 4.154 25 C 0.059 3.941 26 O -0.378 6.378 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.277 0.723 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 12.182 -10.331 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.202 4.202 4 C 0.036 3.964 5 H 0.075 0.925 6 C -0.185 4.185 7 C -0.087 4.087 8 H 0.100 0.900 9 C -0.186 4.186 10 C 0.266 3.734 11 O -0.422 6.422 12 N -0.188 5.188 13 C -0.452 4.452 14 H 0.127 0.873 15 C -0.144 4.144 16 N -0.488 5.488 17 Si 0.685 3.315 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.180 1.180 21 C 0.052 3.948 22 C -0.114 4.114 23 N -0.120 5.120 24 C -0.192 4.192 25 C -0.017 4.017 26 O -0.297 6.297 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.377 11.954 -11.071 18.320 hybrid contribution -1.009 -0.567 0.430 1.235 sum -9.387 11.387 -10.641 18.193 Atomic orbital electron populations 1.21771 0.94825 1.01642 1.01911 1.21153 0.96387 0.97019 0.96072 1.21817 1.00944 0.95670 1.01769 1.22110 0.93005 0.95417 0.85902 0.92507 1.22338 0.96156 1.01831 0.98194 1.20859 1.01247 0.92468 0.94154 0.90050 1.21924 1.01639 0.96725 0.98281 1.20309 0.84281 0.81407 0.87409 1.90547 1.38914 1.63618 1.49090 1.43674 1.46409 1.07154 1.21519 1.19051 1.01013 1.20927 1.04159 0.87327 1.25374 0.98455 0.94930 0.95647 1.69752 1.36610 1.13456 1.29008 0.87214 0.86338 0.79464 0.78509 1.19712 1.20529 1.17975 1.19565 0.91379 0.98695 0.85204 1.30075 0.94391 0.93090 0.93827 1.81085 1.08788 1.09395 1.12687 1.22300 0.95283 1.00916 1.00660 1.22641 0.94971 0.97909 0.86227 1.87853 1.74642 1.53817 1.13374 0.91761 0.93081 0.92979 0.90424 0.93270 0.91783 0.92573 0.90592 0.91240 0.89777 0.90189 0.91266 0.86804 0.87561 0.88194 0.91745 0.93252 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.05 37.16 0.34 -0.98 16 2 C -0.09 -0.84 2.81 -90.62 -0.25 -1.10 16 3 C -0.14 -1.34 8.70 37.16 0.32 -1.02 16 4 C 0.09 1.05 2.10 -26.69 -0.06 1.00 16 5 H 0.06 0.64 6.71 -51.92 -0.35 0.29 16 6 C -0.15 -1.71 4.63 -26.59 -0.12 -1.84 16 7 C -0.07 -0.98 2.34 -90.43 -0.21 -1.19 16 8 H 0.08 1.29 7.97 -51.93 -0.41 0.87 16 9 C -0.15 -2.23 3.22 -27.88 -0.09 -2.32 16 10 C 0.48 9.83 7.26 -10.99 -0.08 9.75 16 11 O -0.54 -12.97 13.86 5.54 0.08 -12.90 16 12 N -0.46 -10.09 2.16 -117.93 -0.25 -10.35 16 13 C -0.32 -8.47 9.36 -14.93 -0.14 -8.61 16 14 H 0.11 3.26 7.91 -52.49 -0.42 2.84 16 15 C 0.06 1.61 5.26 -17.47 -0.09 1.51 16 16 N -0.85 -23.24 13.96 55.50 0.77 -22.46 16 17 Si 0.86 17.86 25.04 -169.99 -4.26 13.60 16 18 H -0.27 -5.11 6.69 56.52 0.38 -4.74 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 21 C 0.18 3.16 4.27 -6.83 -0.03 3.14 16 22 C 0.21 3.80 15.00 -20.75 -0.31 3.49 16 23 N -0.44 -8.75 18.54 42.17 0.78 -7.97 16 24 C -0.15 -2.23 5.40 -26.59 -0.14 -2.38 16 25 C 0.06 0.77 6.57 37.21 0.24 1.02 16 26 O -0.38 -4.81 9.06 -35.23 -0.32 -5.13 16 27 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 33 H 0.06 0.51 6.38 -51.93 -0.33 0.18 16 34 H 0.08 0.86 6.31 -51.93 -0.33 0.53 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.13 4.31 -51.93 -0.22 0.91 16 37 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 38 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.11 2.08 3.61 -51.93 -0.19 1.90 16 40 H 0.11 1.41 6.70 -51.93 -0.35 1.06 16 41 H 0.10 1.74 5.92 -51.93 -0.31 1.43 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.66 6.50 -51.93 -0.34 0.32 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -29.38 339.94 -5.24 -34.62 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.54 Total: 4.99 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.63 Total: 0.47 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 1.30 Total: -40.78 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.24 Total: -18.03 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -4.26 Total: 13.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.38 -5.24 -34.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358975296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.567 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds