Wall clock time and date at job start Tue Mar 31 2020 07:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47231 * 2 1 4 4 C 1.53001 * 109.47244 * 119.99988 * 2 1 3 5 5 H 1.09010 * 109.48935 * 59.96483 * 4 2 1 6 6 C 1.53087 * 109.48345 * 179.97438 * 4 2 1 7 7 C 1.53179 * 109.16256 * 177.58999 * 6 4 2 8 8 H 1.08999 * 109.54310 * 183.15331 * 7 6 4 9 9 C 1.53005 * 109.54293 * 62.89088 * 7 6 4 10 10 C 1.50701 * 109.47191 * 175.44323 * 9 7 6 11 11 O 1.21297 * 119.99927 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.37097 * 120.00231 * 180.02562 * 12 10 9 14 14 H 1.07994 * 120.00073 * 322.47408 * 13 12 10 15 15 C 1.38949 * 120.00260 * 142.47353 * 13 12 10 16 16 N 1.31414 * 120.00221 * 157.59067 * 15 13 12 17 17 Si 1.86804 * 119.99873 * 337.59410 * 15 13 12 18 18 H 1.48502 * 109.47390 * 95.70357 * 17 15 13 19 19 H 1.48504 * 109.46966 * 215.70573 * 17 15 13 20 20 H 1.48500 * 109.47106 * 335.70086 * 17 15 13 21 21 C 1.46505 * 119.99948 * 359.97438 * 12 10 9 22 22 C 1.47195 * 109.47137 * 83.79913 * 21 12 10 23 23 N 7.17583 * 114.50397 * 170.68761 * 2 1 3 24 24 C 1.53179 * 109.04058 * 303.02150 * 7 6 4 25 25 C 1.53097 * 109.21267 * 56.94935 * 24 7 6 26 26 O 1.42903 * 109.48097 * 299.94337 * 4 2 1 27 27 H 1.09003 * 109.46947 * 299.99890 * 1 2 3 28 28 H 1.08999 * 109.46602 * 59.99756 * 1 2 3 29 29 H 1.09000 * 109.47540 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47165 * 239.99606 * 2 1 3 31 31 H 1.08999 * 109.47527 * 299.99677 * 3 2 1 32 32 H 1.09003 * 109.47066 * 60.00182 * 3 2 1 33 33 H 1.09004 * 109.46872 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.52058 * 57.69080 * 6 4 2 35 35 H 1.08994 * 109.57800 * 297.52840 * 6 4 2 36 36 H 1.09003 * 109.46815 * 295.44122 * 9 7 6 37 37 H 1.08993 * 109.46767 * 55.44169 * 9 7 6 38 38 H 0.96992 * 120.00016 * 180.02562 * 16 15 13 39 39 H 1.08998 * 109.46871 * 203.80399 * 21 12 10 40 40 H 1.09005 * 109.47091 * 323.79828 * 21 12 10 41 41 H 1.08994 * 109.52183 * 176.88478 * 24 7 6 42 42 H 1.09001 * 109.52160 * 297.01627 * 24 7 6 43 43 H 1.08999 * 109.48087 * 62.40242 * 25 24 7 44 44 H 1.08996 * 109.47819 * 182.44375 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6763 -1.7489 1.2499 6 6 3.5709 -0.7220 1.2492 7 6 4.0734 -1.3921 2.5316 8 1 5.1620 -1.3461 2.5646 9 6 3.6201 -2.8533 2.5571 10 6 4.2082 -3.5408 3.7623 11 8 4.9203 -2.9230 4.5256 12 7 3.9438 -4.8423 3.9915 13 6 4.4784 -5.4676 5.0882 14 1 5.4811 -5.2290 5.4105 15 6 3.7301 -6.4084 5.7851 16 7 4.3338 -7.3099 6.5265 17 14 1.8658 -6.3917 5.6679 18 1 1.4264 -7.3563 4.6278 19 1 1.2840 -6.7779 6.9786 20 1 1.4048 -5.0277 5.3045 21 6 3.0842 -5.5885 3.0693 22 6 3.8859 -6.0711 1.9331 23 7 4.5062 -6.4435 1.0566 24 6 3.4925 -0.6542 3.7418 25 6 1.9645 -0.6548 3.6463 26 8 1.5649 -0.0470 2.4162 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 3.9356 0.3044 1.2076 35 1 3.9358 -1.2736 0.3829 36 1 2.5322 -2.8952 2.6097 37 1 3.9597 -3.3548 1.6509 38 1 3.8114 -7.9669 7.0126 39 1 2.6439 -6.4386 3.5905 40 1 2.2911 -4.9363 2.7034 41 1 3.8004 -1.1581 4.6579 42 1 3.8565 0.3732 3.7511 43 1 1.5987 -1.6811 3.6789 44 1 1.5479 -0.0934 4.4826 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358975296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:54 Heat of formation + Delta-G solvation = -75.285850 kcal Electronic energy + Delta-G solvation = -25059.032074 eV Core-core repulsion = 21589.874085 eV Total energy + Delta-G solvation = -3469.157990 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.50054 -40.20182 -37.95179 -36.62188 -36.06745 -35.25153 -34.16343 -30.93064 -30.03946 -29.31061 -27.91021 -26.67927 -25.30412 -24.41502 -21.46922 -20.97778 -20.35252 -19.43153 -18.45077 -17.88527 -17.29690 -17.13345 -16.78386 -16.35108 -15.72635 -15.66841 -15.29355 -15.03532 -14.88545 -14.79741 -14.56087 -14.27240 -14.00064 -13.98628 -13.78856 -13.52543 -13.20159 -13.01889 -12.73532 -12.65279 -12.54545 -12.42027 -12.32644 -12.21565 -11.96542 -11.76661 -11.64138 -11.49808 -11.28227 -11.10658 -10.91301 -10.38958 -10.09675 -9.93661 -8.48787 -6.17408 1.24807 1.39316 1.44887 1.52506 1.70487 1.89063 2.22408 2.71875 2.83673 2.95382 3.17127 3.65389 3.76344 3.83993 3.97330 4.04292 4.09707 4.18099 4.23165 4.29922 4.36596 4.40047 4.51658 4.61456 4.61940 4.78387 4.82199 4.89638 4.95829 5.02143 5.13647 5.14864 5.19896 5.26471 5.31010 5.37829 5.42681 5.49710 5.56852 5.64208 6.05600 6.41587 6.42966 6.49936 6.90857 7.19853 7.76819 8.68159 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.004759 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.163783 B = 5882.535706 C = 6043.687000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.144 4.144 4 C 0.088 3.912 5 H 0.066 0.934 6 C -0.139 4.139 7 C -0.069 4.069 8 H 0.057 0.943 9 C -0.133 4.133 10 C 0.472 3.528 11 O -0.586 6.586 12 N -0.476 5.476 13 C -0.342 4.342 14 H 0.042 0.958 15 C 0.013 3.987 16 N -0.909 5.909 17 Si 0.928 3.072 18 H -0.228 1.228 19 H -0.289 1.289 20 H -0.230 1.230 21 C 0.177 3.823 22 C 0.219 3.781 23 N -0.466 5.466 24 C -0.152 4.152 25 C 0.063 3.937 26 O -0.381 6.381 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.281 0.719 39 H 0.115 0.885 40 H 0.166 0.834 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 12.820 -13.013 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.201 4.201 4 C 0.030 3.970 5 H 0.084 0.916 6 C -0.176 4.176 7 C -0.088 4.088 8 H 0.075 0.925 9 C -0.172 4.172 10 C 0.263 3.737 11 O -0.468 6.468 12 N -0.199 5.199 13 C -0.469 4.469 14 H 0.060 0.940 15 C -0.190 4.190 16 N -0.546 5.546 17 Si 0.748 3.252 18 H -0.153 1.153 19 H -0.215 1.215 20 H -0.152 1.152 21 C 0.051 3.949 22 C -0.099 4.099 23 N -0.145 5.145 24 C -0.189 4.189 25 C -0.013 4.013 26 O -0.301 6.301 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.183 0.817 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.924 12.596 -13.797 22.163 hybrid contribution 0.267 -0.713 1.300 1.506 sum -11.658 11.884 -12.497 20.816 Atomic orbital electron populations 1.21751 0.94412 1.01956 1.01845 1.21194 0.96710 0.96929 0.95665 1.21803 1.00908 0.95714 1.01687 1.22307 0.92434 0.96169 0.86056 0.91574 1.22286 0.96666 1.01830 0.96828 1.20847 0.99953 0.92283 0.95728 0.92466 1.21933 1.03037 0.96528 0.95750 1.21313 0.83050 0.81054 0.88260 1.90536 1.40628 1.64640 1.50966 1.43700 1.47097 1.07800 1.21306 1.18568 0.99174 1.22073 1.07104 0.93966 1.26255 1.04604 0.93514 0.94614 1.69889 1.39251 1.14718 1.30703 0.86136 0.77919 0.81801 0.79352 1.15259 1.21542 1.15193 1.19910 0.91440 0.99531 0.84007 1.30173 0.93847 0.92386 0.93531 1.81109 1.09200 1.10228 1.13944 1.22209 0.96874 1.00598 0.99242 1.22583 0.93381 0.98325 0.87027 1.87875 1.74520 1.54148 1.13526 0.93075 0.91958 0.92462 0.88849 0.92055 0.93201 0.92611 0.90346 0.89686 0.86645 0.88474 0.90907 0.86755 0.81715 0.91628 0.91525 0.92969 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.05 71.98 0.65 -1.43 16 2 C -0.09 -1.33 2.81 -10.80 -0.03 -1.36 16 3 C -0.14 -2.25 8.70 71.98 0.63 -1.62 16 4 C 0.09 1.65 2.10 30.62 0.06 1.71 16 5 H 0.07 1.14 6.71 -2.38 -0.02 1.13 16 6 C -0.14 -2.80 4.63 30.68 0.14 -2.66 16 7 C -0.07 -1.88 2.34 -10.67 -0.02 -1.90 16 8 H 0.06 1.82 7.97 -2.39 -0.02 1.80 16 9 C -0.13 -3.71 3.22 29.85 0.10 -3.62 16 10 C 0.47 19.33 7.26 87.66 0.64 19.97 16 11 O -0.59 -29.30 13.86 -3.08 -0.04 -29.34 16 12 N -0.48 -20.38 2.16 -645.42 -1.39 -21.77 16 13 C -0.34 -18.56 9.36 84.04 0.79 -17.77 16 14 H 0.04 2.78 7.91 -2.91 -0.02 2.76 16 15 C 0.01 0.67 5.26 84.93 0.45 1.12 16 16 N -0.91 -51.45 13.96 21.66 0.30 -51.15 16 17 Si 0.93 35.10 25.04 68.60 1.72 36.81 16 18 H -0.23 -7.16 6.69 99.48 0.67 -6.49 16 19 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.23 -7.68 7.11 99.48 0.71 -6.98 16 21 C 0.18 5.64 4.27 84.57 0.36 6.00 16 22 C 0.22 7.56 15.00 89.43 1.34 8.90 16 23 N -0.47 -17.60 18.54 20.01 0.37 -17.23 16 24 C -0.15 -4.30 5.40 30.69 0.17 -4.13 16 25 C 0.06 1.51 6.57 72.01 0.47 1.98 16 26 O -0.38 -8.57 9.06 -148.98 -1.35 -9.92 16 27 H 0.05 0.88 7.68 -2.39 -0.02 0.87 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 33 H 0.05 0.87 6.38 -2.38 -0.02 0.85 16 34 H 0.08 1.57 6.31 -2.39 -0.02 1.56 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 2.54 4.31 -2.39 -0.01 2.52 16 37 H 0.10 2.45 7.48 -2.39 -0.02 2.44 16 38 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.12 3.70 3.61 -2.39 -0.01 3.69 16 40 H 0.17 3.31 6.70 -2.38 -0.02 3.29 16 41 H 0.07 2.34 5.92 -2.39 -0.01 2.33 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.21 6.50 -2.39 -0.02 1.19 16 44 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -69.93 339.94 6.31 -63.62 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.97 Total: 23.80 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.74 Total: 5.17 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -0.72 Total: -90.14 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.39 Total: -39.26 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 1.72 Total: 36.81 kcal Total: -69.93 6.31 -63.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358975296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.666 kcal (2) G-P(sol) polarization free energy of solvation -69.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds