Wall clock time and date at job start Tue Mar 31 2020 07:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47035 * 2 1 4 4 C 1.53003 * 109.47026 * 119.99665 * 2 1 3 5 5 H 1.08995 * 109.49031 * 300.03076 * 4 2 1 6 6 C 1.53094 * 109.47729 * 180.02562 * 4 2 1 7 7 C 1.53181 * 109.16056 * 182.40962 * 6 4 2 8 8 H 1.08996 * 109.54459 * 297.11271 * 7 6 4 9 9 C 1.53005 * 109.54543 * 176.93396 * 7 6 4 10 10 C 1.50698 * 109.46986 * 175.00098 * 9 7 6 11 11 O 1.21287 * 120.00474 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99785 * 180.02562 * 10 9 7 13 13 C 1.37095 * 120.00206 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00080 * 18.11508 * 13 12 10 15 15 C 1.38952 * 119.99818 * 198.11553 * 13 12 10 16 16 N 1.31409 * 120.00394 * 18.73135 * 15 13 12 17 17 Si 1.86802 * 119.99541 * 198.72857 * 15 13 12 18 18 H 1.48499 * 109.47402 * 85.59105 * 17 15 13 19 19 H 1.48499 * 109.47073 * 205.58827 * 17 15 13 20 20 H 1.48496 * 109.47334 * 325.58865 * 17 15 13 21 21 C 1.46502 * 119.99788 * 359.97438 * 12 10 9 22 22 C 1.47204 * 109.47374 * 84.20806 * 21 12 10 23 23 N 8.04407 * 155.98790 * 79.54862 * 2 1 3 24 24 C 1.53185 * 109.03588 * 56.97873 * 7 6 4 25 25 C 1.53095 * 109.16114 * 303.01883 * 24 7 6 26 26 O 1.42899 * 109.47850 * 60.06228 * 4 2 1 27 27 H 1.09004 * 109.46907 * 300.00242 * 1 2 3 28 28 H 1.08997 * 109.46962 * 60.00127 * 1 2 3 29 29 H 1.09002 * 109.46923 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47501 * 240.00167 * 2 1 3 31 31 H 1.08997 * 109.47141 * 299.99763 * 3 2 1 32 32 H 1.09004 * 109.47471 * 60.00103 * 3 2 1 33 33 H 1.09003 * 109.47311 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.52891 * 62.50346 * 6 4 2 35 35 H 1.09002 * 109.52227 * 302.31361 * 6 4 2 36 36 H 1.09006 * 109.46863 * 295.00281 * 9 7 6 37 37 H 1.08994 * 109.46620 * 54.99968 * 9 7 6 38 38 H 0.96999 * 120.00165 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.47296 * 204.20734 * 21 12 10 40 40 H 1.08998 * 109.47298 * 324.20590 * 21 12 10 41 41 H 1.08993 * 109.51929 * 62.92582 * 24 7 6 42 42 H 1.09001 * 109.52032 * 183.11712 * 24 7 6 43 43 H 1.08999 * 109.47717 * 177.59306 * 25 24 7 44 44 H 1.08994 * 109.48025 * 297.62354 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6764 -0.2079 2.1394 6 6 3.5709 -0.7207 1.2498 7 6 4.0736 -1.4962 2.4715 8 1 3.7506 -0.9915 3.3819 9 6 5.6017 -1.5667 2.4399 10 6 6.1005 -2.2215 3.7021 11 8 5.3115 -2.5955 4.5440 12 7 7.4234 -2.3916 3.8956 13 6 7.8773 -2.9878 5.0437 14 1 7.2039 -3.5764 5.6491 15 6 9.2037 -2.8348 5.4283 16 7 9.9232 -1.8541 4.9309 17 14 9.9640 -4.0232 6.6527 18 1 10.4724 -5.2182 5.9324 19 1 11.0872 -3.3556 7.3583 20 1 8.9370 -4.4405 7.6407 21 6 8.3764 -1.9404 2.8784 22 6 8.6586 -0.5086 3.0712 23 7 8.8780 0.5938 3.2191 24 6 3.4926 -2.9132 2.4375 25 6 1.9647 -2.8288 2.3911 26 8 1.5649 -2.0689 1.2488 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 3.9350 0.3057 1.2949 35 1 3.9356 -1.1979 0.3401 36 1 5.9206 -2.1512 1.5768 37 1 6.0104 -0.5589 2.3673 38 1 10.8492 -1.7475 5.1992 39 1 9.3020 -2.5088 2.9701 40 1 7.9509 -2.0966 1.8872 41 1 3.8557 -3.4345 1.5519 42 1 3.8005 -3.4546 3.3320 43 1 1.5471 -3.8334 2.3237 44 1 1.5998 -2.3434 3.2962 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358975299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:58 Heat of formation + Delta-G solvation = -69.374180 kcal Electronic energy + Delta-G solvation = -24448.021902 eV Core-core repulsion = 20979.120261 eV Total energy + Delta-G solvation = -3468.901640 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.85720 -38.68044 -35.99351 -35.36193 -34.60891 -33.95358 -31.87753 -29.95740 -28.72958 -27.42086 -27.10910 -24.93340 -23.65015 -22.92538 -20.23679 -20.02725 -18.84578 -17.89577 -16.52809 -16.32782 -16.24458 -15.81105 -15.04282 -14.63253 -14.37591 -14.27898 -14.09320 -13.69702 -13.55577 -13.05207 -13.00045 -12.80125 -12.41518 -12.30097 -12.11548 -11.98110 -11.73565 -11.52845 -11.36504 -11.29429 -11.18754 -11.07024 -11.01158 -10.82735 -10.62079 -10.52618 -10.42626 -10.32977 -10.11449 -9.97202 -9.29014 -9.26055 -8.50299 -8.04107 -6.50732 -4.02254 3.09400 3.20797 3.24311 3.55731 3.79061 3.83814 3.98551 4.10720 4.54128 4.81558 4.85544 4.89352 5.00578 5.05243 5.14998 5.21461 5.28822 5.30223 5.37102 5.51829 5.56070 5.68967 5.69610 5.71402 5.75322 5.82318 5.84608 5.92500 6.01852 6.05639 6.08433 6.15041 6.22266 6.22733 6.29163 6.38206 6.53419 6.66893 6.69789 7.40672 7.45399 7.90198 8.27492 8.72906 8.99846 9.19241 9.73938 10.55159 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.003792 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.079657 B = 7382.413653 C = 8262.032671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.149 4.149 4 C 0.097 3.903 5 H 0.054 0.946 6 C -0.147 4.147 7 C -0.067 4.067 8 H 0.075 0.925 9 C -0.131 4.131 10 C 0.457 3.543 11 O -0.571 6.571 12 N -0.446 5.446 13 C -0.312 4.312 14 H 0.108 0.892 15 C 0.030 3.970 16 N -0.882 5.882 17 Si 0.929 3.071 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.270 1.270 21 C 0.221 3.779 22 C 0.248 3.752 23 N -0.476 5.476 24 C -0.152 4.152 25 C 0.064 3.936 26 O -0.383 6.383 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.273 0.727 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.299 0.115 -10.896 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.206 4.206 4 C 0.039 3.961 5 H 0.072 0.928 6 C -0.185 4.185 7 C -0.086 4.086 8 H 0.093 0.907 9 C -0.171 4.171 10 C 0.247 3.753 11 O -0.454 6.454 12 N -0.166 5.166 13 C -0.439 4.439 14 H 0.126 0.874 15 C -0.173 4.173 16 N -0.521 5.521 17 Si 0.755 3.245 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.194 1.194 21 C 0.093 3.907 22 C -0.070 4.070 23 N -0.156 5.156 24 C -0.190 4.190 25 C -0.012 4.012 26 O -0.303 6.303 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.107 0.893 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.278 1.534 -10.357 15.388 hybrid contribution 0.943 -0.705 0.894 1.478 sum -10.335 0.829 -9.463 14.037 Atomic orbital electron populations 1.21763 0.94873 1.02285 1.01102 1.21091 0.96287 0.95613 0.97635 1.21885 1.01604 0.95240 1.01910 1.22081 0.93010 0.83343 0.97617 0.92764 1.22362 0.95823 1.01078 0.99215 1.20856 0.93785 0.96249 0.97745 0.90658 1.21662 0.96200 1.01443 0.97788 1.20164 0.82682 0.83577 0.88925 1.90491 1.54270 1.53859 1.46787 1.43657 1.03293 1.52243 1.17409 1.19731 0.94959 1.27587 1.01606 0.87445 1.25280 0.97047 0.96472 0.98470 1.69819 1.10108 1.27165 1.45040 0.85887 0.78623 0.79880 0.80061 1.20112 1.21128 1.19440 1.18754 0.97196 0.83834 0.90889 1.29234 0.91783 0.94692 0.91284 1.80796 1.10056 1.14631 1.10084 1.22337 0.95094 0.97538 1.04019 1.22569 0.94958 0.95625 0.88078 1.87841 1.74799 1.23220 1.44393 0.93039 0.93068 0.91868 0.90577 0.92358 0.92569 0.91981 0.90935 0.91142 0.90076 0.90423 0.91636 0.85354 0.90025 0.91982 0.88306 0.89298 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.05 37.16 0.34 -1.02 16 2 C -0.09 -0.89 2.72 -90.62 -0.25 -1.14 16 3 C -0.15 -1.33 8.84 37.16 0.33 -1.01 16 4 C 0.10 1.18 2.22 -26.68 -0.06 1.12 16 5 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 6 C -0.15 -1.85 4.28 -26.59 -0.11 -1.96 16 7 C -0.07 -1.03 1.91 -90.43 -0.17 -1.20 16 8 H 0.08 1.30 7.95 -51.93 -0.41 0.89 16 9 C -0.13 -2.16 3.79 -27.88 -0.11 -2.27 16 10 C 0.46 9.92 7.31 -10.99 -0.08 9.84 16 11 O -0.57 -14.05 13.66 5.55 0.08 -13.97 16 12 N -0.45 -10.14 2.60 -117.93 -0.31 -10.45 16 13 C -0.31 -7.90 9.33 -14.93 -0.14 -8.04 16 14 H 0.11 2.87 7.38 -52.49 -0.39 2.49 16 15 C 0.03 0.74 4.93 -17.47 -0.09 0.66 16 16 N -0.88 -22.05 9.34 55.50 0.52 -21.53 16 17 Si 0.93 19.55 29.59 -169.99 -5.03 14.52 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 19 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 C 0.22 4.30 4.91 -6.83 -0.03 4.27 16 22 C 0.25 5.41 12.94 -20.83 -0.27 5.14 16 23 N -0.48 -11.19 18.52 42.06 0.78 -10.41 16 24 C -0.15 -2.28 5.13 -26.59 -0.14 -2.42 16 25 C 0.06 0.85 6.84 37.21 0.25 1.11 16 26 O -0.38 -5.18 9.74 -35.23 -0.34 -5.52 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.56 6.49 -51.93 -0.34 0.22 16 34 H 0.07 0.86 6.57 -51.93 -0.34 0.52 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.15 7.42 -51.93 -0.39 0.76 16 37 H 0.08 1.29 7.51 -51.93 -0.39 0.90 16 38 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.13 2.58 6.40 -51.93 -0.33 2.25 16 40 H 0.08 1.21 6.68 -51.93 -0.35 0.86 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 1.74 6.07 -51.93 -0.32 1.43 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -29.36 348.85 -6.58 -35.94 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.01 Total: 3.09 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.52 Total: 3.08 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.99 Total: -42.40 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.27 Total: -19.49 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.36 -6.58 -35.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358975299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.432 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds