Wall clock time and date at job start Tue Mar 31 2020 07:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47035 * 2 1 4 4 C 1.53003 * 109.47026 * 119.99665 * 2 1 3 5 5 H 1.08995 * 109.49031 * 300.03076 * 4 2 1 6 6 C 1.53094 * 109.47729 * 180.02562 * 4 2 1 7 7 C 1.53181 * 109.16056 * 182.40962 * 6 4 2 8 8 H 1.08996 * 109.54459 * 297.11271 * 7 6 4 9 9 C 1.53005 * 109.54543 * 176.93396 * 7 6 4 10 10 C 1.50698 * 109.46986 * 175.00098 * 9 7 6 11 11 O 1.21287 * 120.00474 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99785 * 180.02562 * 10 9 7 13 13 C 1.37095 * 120.00206 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00080 * 18.11508 * 13 12 10 15 15 C 1.38952 * 119.99818 * 198.11553 * 13 12 10 16 16 N 1.31409 * 120.00394 * 18.73135 * 15 13 12 17 17 Si 1.86802 * 119.99541 * 198.72857 * 15 13 12 18 18 H 1.48499 * 109.47402 * 85.59105 * 17 15 13 19 19 H 1.48499 * 109.47073 * 205.58827 * 17 15 13 20 20 H 1.48496 * 109.47334 * 325.58865 * 17 15 13 21 21 C 1.46502 * 119.99788 * 359.97438 * 12 10 9 22 22 C 1.47204 * 109.47374 * 84.20806 * 21 12 10 23 23 N 8.04407 * 155.98790 * 79.54862 * 2 1 3 24 24 C 1.53185 * 109.03588 * 56.97873 * 7 6 4 25 25 C 1.53095 * 109.16114 * 303.01883 * 24 7 6 26 26 O 1.42899 * 109.47850 * 60.06228 * 4 2 1 27 27 H 1.09004 * 109.46907 * 300.00242 * 1 2 3 28 28 H 1.08997 * 109.46962 * 60.00127 * 1 2 3 29 29 H 1.09002 * 109.46923 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47501 * 240.00167 * 2 1 3 31 31 H 1.08997 * 109.47141 * 299.99763 * 3 2 1 32 32 H 1.09004 * 109.47471 * 60.00103 * 3 2 1 33 33 H 1.09003 * 109.47311 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.52891 * 62.50346 * 6 4 2 35 35 H 1.09002 * 109.52227 * 302.31361 * 6 4 2 36 36 H 1.09006 * 109.46863 * 295.00281 * 9 7 6 37 37 H 1.08994 * 109.46620 * 54.99968 * 9 7 6 38 38 H 0.96999 * 120.00165 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.47296 * 204.20734 * 21 12 10 40 40 H 1.08998 * 109.47298 * 324.20590 * 21 12 10 41 41 H 1.08993 * 109.51929 * 62.92582 * 24 7 6 42 42 H 1.09001 * 109.52032 * 183.11712 * 24 7 6 43 43 H 1.08999 * 109.47717 * 177.59306 * 25 24 7 44 44 H 1.08994 * 109.48025 * 297.62354 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6764 -0.2079 2.1394 6 6 3.5709 -0.7207 1.2498 7 6 4.0736 -1.4962 2.4715 8 1 3.7506 -0.9915 3.3819 9 6 5.6017 -1.5667 2.4399 10 6 6.1005 -2.2215 3.7021 11 8 5.3115 -2.5955 4.5440 12 7 7.4234 -2.3916 3.8956 13 6 7.8773 -2.9878 5.0437 14 1 7.2039 -3.5764 5.6491 15 6 9.2037 -2.8348 5.4283 16 7 9.9232 -1.8541 4.9309 17 14 9.9640 -4.0232 6.6527 18 1 10.4724 -5.2182 5.9324 19 1 11.0872 -3.3556 7.3583 20 1 8.9370 -4.4405 7.6407 21 6 8.3764 -1.9404 2.8784 22 6 8.6586 -0.5086 3.0712 23 7 8.8780 0.5938 3.2191 24 6 3.4926 -2.9132 2.4375 25 6 1.9647 -2.8288 2.3911 26 8 1.5649 -2.0689 1.2488 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 3.9350 0.3057 1.2949 35 1 3.9356 -1.1979 0.3401 36 1 5.9206 -2.1512 1.5768 37 1 6.0104 -0.5589 2.3673 38 1 10.8492 -1.7475 5.1992 39 1 9.3020 -2.5088 2.9701 40 1 7.9509 -2.0966 1.8872 41 1 3.8557 -3.4345 1.5519 42 1 3.8005 -3.4546 3.3320 43 1 1.5471 -3.8334 2.3237 44 1 1.5998 -2.3434 3.2962 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358975299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:58 Heat of formation + Delta-G solvation = -85.407449 kcal Electronic energy + Delta-G solvation = -24448.717156 eV Core-core repulsion = 20979.120261 eV Total energy + Delta-G solvation = -3469.596895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13424 -40.14088 -37.67963 -36.41029 -36.13474 -35.36004 -33.72123 -30.98156 -30.07629 -29.03745 -27.90119 -26.57939 -24.72222 -24.15999 -21.36363 -21.11004 -20.30888 -19.68873 -18.16564 -17.90724 -17.29616 -16.89764 -16.63937 -16.08323 -15.87686 -15.45134 -15.31886 -14.87959 -14.71153 -14.64038 -14.21177 -14.00203 -13.87544 -13.46120 -13.40561 -13.32594 -13.05486 -12.96942 -12.92883 -12.66422 -12.41551 -12.31147 -12.19754 -12.13413 -12.02205 -11.90162 -11.74454 -11.61654 -11.24731 -11.08104 -11.01415 -10.46481 -10.15298 -9.86820 -8.38300 -5.95665 1.40465 1.47490 1.56756 1.85366 2.09032 2.28000 2.36299 2.86343 3.02288 3.12653 3.61506 3.71189 3.79241 3.91220 4.01699 4.11993 4.20703 4.34781 4.37980 4.42123 4.45082 4.54604 4.66121 4.68279 4.78716 4.85002 4.89351 4.91717 4.94329 4.97315 5.03506 5.06309 5.14819 5.21954 5.28763 5.41858 5.44206 5.49513 5.51278 5.53678 6.06917 6.37485 6.43003 7.01632 7.15338 7.39373 7.97259 8.64911 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.003792 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.079657 B = 7382.413653 C = 8262.032671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.147 4.147 4 C 0.093 3.907 5 H 0.046 0.954 6 C -0.138 4.138 7 C -0.066 4.066 8 H 0.047 0.953 9 C -0.120 4.120 10 C 0.451 3.549 11 O -0.608 6.608 12 N -0.460 5.460 13 C -0.337 4.337 14 H 0.082 0.918 15 C 0.003 3.997 16 N -0.897 5.897 17 Si 0.986 3.014 18 H -0.260 1.260 19 H -0.287 1.287 20 H -0.280 1.280 21 C 0.222 3.778 22 C 0.260 3.740 23 N -0.511 5.511 24 C -0.148 4.148 25 C 0.067 3.933 26 O -0.387 6.387 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.273 0.727 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 0.093 -12.960 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C -0.205 4.205 4 C 0.035 3.965 5 H 0.064 0.936 6 C -0.176 4.176 7 C -0.085 4.085 8 H 0.065 0.935 9 C -0.160 4.160 10 C 0.242 3.758 11 O -0.493 6.493 12 N -0.180 5.180 13 C -0.465 4.465 14 H 0.100 0.900 15 C -0.198 4.198 16 N -0.536 5.536 17 Si 0.811 3.189 18 H -0.184 1.184 19 H -0.213 1.213 20 H -0.205 1.205 21 C 0.095 3.905 22 C -0.057 4.057 23 N -0.191 5.191 24 C -0.185 4.185 25 C -0.009 4.009 26 O -0.307 6.307 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.399 1.518 -12.446 16.946 hybrid contribution 0.930 -0.693 1.576 1.957 sum -10.469 0.825 -10.870 15.114 Atomic orbital electron populations 1.21746 0.94429 1.01820 1.01849 1.21095 0.96667 0.96066 0.96444 1.21882 1.01598 0.94421 1.02567 1.22224 0.92837 0.82895 0.98522 0.93600 1.22301 0.96005 1.01218 0.98027 1.20830 0.93051 0.96651 0.98016 0.93460 1.21665 0.96855 1.01480 0.96026 1.21100 0.82112 0.82505 0.90128 1.90475 1.55213 1.55091 1.48545 1.43836 1.04258 1.52416 1.17494 1.19623 0.95231 1.28620 1.03013 0.90042 1.25859 0.96853 0.97367 0.99734 1.69904 1.10116 1.27777 1.45814 0.85043 0.77268 0.78569 0.78055 1.18436 1.21267 1.20476 1.19069 0.96892 0.82104 0.92439 1.29701 0.90756 0.95052 0.90226 1.80798 1.11249 1.15845 1.11235 1.22236 0.96306 0.97047 1.02930 1.22540 0.93864 0.96535 0.87987 1.87847 1.74867 1.23813 1.44146 0.93165 0.91490 0.92923 0.90281 0.90902 0.92771 0.91963 0.89976 0.89794 0.86616 0.89897 0.91693 0.85857 0.84592 0.90789 0.91426 0.87686 0.94208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.05 71.98 0.65 -1.75 16 2 C -0.08 -1.52 2.72 -10.79 -0.03 -1.55 16 3 C -0.15 -2.27 8.84 71.98 0.64 -1.63 16 4 C 0.09 2.11 2.22 30.63 0.07 2.17 16 5 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 6 C -0.14 -3.16 4.28 30.69 0.13 -3.02 16 7 C -0.07 -1.97 1.91 -10.67 -0.02 -1.99 16 8 H 0.05 1.66 7.95 -2.39 -0.02 1.64 16 9 C -0.12 -3.76 3.79 29.85 0.11 -3.65 16 10 C 0.45 19.50 7.31 87.66 0.64 20.14 16 11 O -0.61 -30.81 13.66 -3.05 -0.04 -30.85 16 12 N -0.46 -20.78 2.60 -645.41 -1.68 -22.45 16 13 C -0.34 -17.33 9.33 84.04 0.78 -16.55 16 14 H 0.08 4.53 7.38 -2.91 -0.02 4.51 16 15 C 0.00 0.16 4.93 84.93 0.42 0.58 16 16 N -0.90 -44.47 9.34 21.66 0.20 -44.27 16 17 Si 0.99 40.08 29.59 68.60 2.03 42.11 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 19 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 C 0.22 8.24 4.91 84.57 0.42 8.66 16 22 C 0.26 11.03 12.94 89.47 1.16 12.19 16 23 N -0.51 -23.64 18.52 19.98 0.37 -23.27 16 24 C -0.15 -4.32 5.13 30.69 0.16 -4.16 16 25 C 0.07 1.74 6.84 72.01 0.49 2.23 16 26 O -0.39 -9.87 9.74 -148.98 -1.45 -11.32 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 1.00 7.68 -2.39 -0.02 0.98 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.96 6.49 -2.39 -0.02 0.94 16 34 H 0.08 1.74 6.57 -2.39 -0.02 1.72 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 2.83 7.42 -2.38 -0.02 2.81 16 37 H 0.08 2.56 7.51 -2.39 -0.02 2.54 16 38 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 39 H 0.12 4.78 6.40 -2.38 -0.02 4.77 16 40 H 0.14 3.52 6.68 -2.39 -0.02 3.51 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.43 6.07 -2.39 -0.01 2.42 16 43 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -64.34 348.85 6.03 -58.30 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.98 Total: 20.08 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.62 Total: 11.68 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -1.11 Total: -90.00 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.49 Total: -42.17 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -64.34 6.03 -58.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358975299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.103 kcal (2) G-P(sol) polarization free energy of solvation -64.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds