Wall clock time and date at job start Tue Mar 31 2020 07:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47477 * 2 1 4 4 C 1.53001 * 109.47278 * 120.00286 * 2 1 3 5 5 H 1.09007 * 109.47725 * 299.97310 * 4 2 1 6 6 C 1.53094 * 109.48392 * 179.97438 * 4 2 1 7 7 C 1.53178 * 109.16563 * 182.40853 * 6 4 2 8 8 H 1.08994 * 109.54829 * 176.93104 * 7 6 4 9 9 C 1.52999 * 109.53899 * 297.11096 * 7 6 4 10 10 C 1.50707 * 109.46847 * 185.00075 * 9 7 6 11 11 O 1.21290 * 119.99957 * 359.97438 * 10 9 7 12 12 N 1.34782 * 119.99770 * 179.97438 * 10 9 7 13 13 C 1.37091 * 119.99662 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00321 * 17.72166 * 13 12 10 15 15 C 1.38956 * 120.00054 * 197.72291 * 13 12 10 16 16 N 1.31407 * 119.99429 * 21.42330 * 15 13 12 17 17 Si 1.86796 * 120.00064 * 201.42298 * 15 13 12 18 18 H 1.48503 * 109.47071 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46912 * 119.99833 * 17 15 13 20 20 H 1.48499 * 109.47104 * 240.00110 * 17 15 13 21 21 C 1.46497 * 120.00151 * 0.02562 * 12 10 9 22 22 C 1.47198 * 109.47485 * 84.22660 * 21 12 10 23 23 N 6.46047 * 81.68765 * 95.53886 * 2 1 3 24 24 C 1.53181 * 109.03660 * 56.97270 * 7 6 4 25 25 C 1.53092 * 109.16294 * 303.02040 * 24 7 6 26 26 O 1.42901 * 109.48209 * 59.99598 * 4 2 1 27 27 H 1.09007 * 109.46999 * 300.00192 * 1 2 3 28 28 H 1.08995 * 109.46889 * 59.99837 * 1 2 3 29 29 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47539 * 240.00010 * 2 1 3 31 31 H 1.09000 * 109.47005 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47194 * 299.99977 * 3 2 1 33 33 H 1.09003 * 109.46681 * 59.99985 * 3 2 1 34 34 H 1.09005 * 109.51286 * 302.30883 * 6 4 2 35 35 H 1.08993 * 109.52566 * 62.43345 * 6 4 2 36 36 H 1.09000 * 109.47070 * 304.99792 * 9 7 6 37 37 H 1.08997 * 109.47715 * 64.99966 * 9 7 6 38 38 H 0.97006 * 119.99772 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.46856 * 204.23379 * 21 12 10 40 40 H 1.09003 * 109.46545 * 324.22576 * 21 12 10 41 41 H 1.09005 * 109.52234 * 62.92855 * 24 7 6 42 42 H 1.08998 * 109.52178 * 183.05158 * 24 7 6 43 43 H 1.08994 * 109.48275 * 297.62664 * 25 24 7 44 44 H 1.09007 * 109.47890 * 177.59123 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6771 -0.2073 2.1393 6 6 3.5709 -0.7220 1.2491 7 6 4.0735 -1.4976 2.4707 8 1 5.1620 -1.5487 2.4478 9 6 3.6212 -0.7884 3.7487 10 6 4.2182 -1.4819 4.9462 11 8 4.9345 -2.4485 4.7925 12 7 3.9561 -1.0279 6.1879 13 6 4.4987 -1.6590 7.2772 14 1 5.3435 -2.3203 7.1528 15 6 3.9618 -1.4480 8.5413 16 7 2.7284 -1.0124 8.6669 17 14 4.9933 -1.7837 10.0621 18 1 6.3374 -2.2640 9.6524 19 1 5.1331 -0.5334 10.8512 20 1 4.3291 -2.8210 10.8916 21 6 3.0905 0.1394 6.3735 22 6 1.6820 -0.2883 6.3677 23 7 0.5960 -0.6170 6.3627 24 6 3.4914 -2.9141 2.4374 25 6 1.9635 -2.8286 2.3917 26 8 1.5637 -2.0686 1.2494 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9348 -1.1997 0.3394 35 1 3.9357 0.3041 1.2926 36 1 3.9548 0.2491 3.7260 37 1 2.5337 -0.8189 3.8159 38 1 2.3537 -0.8647 9.5493 39 1 3.3218 0.6154 7.3264 40 1 3.2582 0.8486 5.5630 41 1 3.8537 -3.4361 1.5517 42 1 3.8002 -3.4559 3.3313 43 1 1.5994 -2.3426 3.2968 44 1 1.5451 -3.8329 2.3247 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358975316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:06 Heat of formation + Delta-G solvation = -65.390852 kcal Electronic energy + Delta-G solvation = -25132.375405 eV Core-core repulsion = 21663.646495 eV Total energy + Delta-G solvation = -3468.728910 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.09066 -38.56044 -35.97884 -35.31832 -34.54027 -33.88313 -31.89669 -29.90185 -28.45531 -27.40520 -27.06974 -24.88487 -23.91497 -23.33774 -20.23830 -19.98016 -18.27414 -17.82510 -16.61674 -16.30402 -16.28553 -15.86894 -14.81294 -14.67360 -14.46015 -14.17366 -14.10572 -13.61737 -13.38000 -13.21650 -13.01042 -12.74565 -12.64892 -12.23751 -12.08532 -11.98689 -11.67161 -11.51596 -11.31616 -11.19972 -11.18282 -11.01713 -10.94481 -10.86626 -10.69672 -10.59532 -10.38494 -10.34002 -10.12741 -9.85028 -9.26984 -9.04067 -8.50676 -8.05876 -6.52849 -4.01811 3.06659 3.20674 3.26580 3.53442 3.77527 3.91986 3.95975 4.10033 4.66149 4.72046 4.86249 4.90579 5.07009 5.11260 5.16142 5.22403 5.30392 5.34266 5.42156 5.56545 5.58917 5.65239 5.69372 5.78719 5.82645 5.83484 5.90146 5.94199 5.99012 6.06914 6.12094 6.13576 6.25425 6.31492 6.40028 6.47160 6.52354 6.60776 6.71872 7.44951 7.49348 7.89292 8.26454 8.70904 8.98994 9.18380 9.73086 10.53357 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.004506 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.891576 B = 6212.537477 C = 6661.808994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.148 4.148 4 C 0.093 3.907 5 H 0.058 0.942 6 C -0.145 4.145 7 C -0.067 4.067 8 H 0.081 0.919 9 C -0.139 4.139 10 C 0.457 3.543 11 O -0.570 6.570 12 N -0.445 5.445 13 C -0.313 4.313 14 H 0.109 0.891 15 C 0.031 3.969 16 N -0.878 5.878 17 Si 0.925 3.075 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.283 1.283 21 C 0.221 3.779 22 C 0.245 3.755 23 N -0.471 5.471 24 C -0.152 4.152 25 C 0.060 3.940 26 O -0.381 6.381 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.272 0.728 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.050 0.950 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 6.406 -12.850 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.205 4.205 4 C 0.035 3.965 5 H 0.075 0.925 6 C -0.183 4.183 7 C -0.086 4.086 8 H 0.099 0.901 9 C -0.179 4.179 10 C 0.246 3.754 11 O -0.453 6.453 12 N -0.165 5.165 13 C -0.440 4.440 14 H 0.126 0.874 15 C -0.172 4.172 16 N -0.517 5.517 17 Si 0.751 3.249 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.209 1.209 21 C 0.093 3.907 22 C -0.073 4.073 23 N -0.151 5.151 24 C -0.190 4.190 25 C -0.016 4.016 26 O -0.301 6.301 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.326 5.403 -12.903 14.051 hybrid contribution 0.802 0.078 1.364 1.584 sum -0.524 5.481 -11.539 12.785 Atomic orbital electron populations 1.21767 0.94839 1.02381 1.01155 1.21090 0.96377 0.95579 0.97571 1.21879 1.01375 0.95295 1.01995 1.22135 0.93025 0.83582 0.97729 0.92454 1.22323 0.96120 1.00986 0.98870 1.20845 1.01046 0.94520 0.92206 0.90065 1.21820 1.01482 1.00212 0.94369 1.20135 0.85507 0.85841 0.83910 1.90500 1.40969 1.28535 1.85258 1.43679 1.41909 1.25442 1.05496 1.19749 1.13331 1.27305 0.83626 0.87384 1.25267 0.95145 0.97303 0.99494 1.69867 1.11540 1.45359 1.24910 0.85881 0.80157 0.78058 0.80758 1.19119 1.20470 1.20918 1.18726 0.79193 0.88706 1.04073 1.29270 0.94723 0.92989 0.90359 1.80852 1.14115 1.08192 1.11979 1.22274 0.95212 0.97541 1.03953 1.22619 0.94993 0.95748 0.88282 1.87839 1.74791 1.23167 1.44281 0.92884 0.93108 0.91876 0.90746 0.92101 0.92419 0.92417 0.91219 0.90849 0.90076 0.90364 0.91704 0.85564 0.89987 0.91952 0.88368 0.93198 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.05 37.15 0.34 -1.23 16 2 C -0.09 -0.96 2.72 -90.62 -0.25 -1.20 16 3 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 4 C 0.09 1.22 1.95 -26.68 -0.05 1.17 16 5 H 0.06 0.80 6.72 -51.93 -0.35 0.46 16 6 C -0.15 -1.81 4.49 -26.59 -0.12 -1.93 16 7 C -0.07 -1.03 2.33 -90.43 -0.21 -1.24 16 8 H 0.08 1.31 7.95 -51.93 -0.41 0.89 16 9 C -0.14 -2.29 3.21 -27.88 -0.09 -2.38 16 10 C 0.46 9.86 7.27 -10.98 -0.08 9.78 16 11 O -0.57 -14.00 13.66 5.55 0.08 -13.93 16 12 N -0.44 -10.06 2.60 -117.93 -0.31 -10.37 16 13 C -0.31 -7.90 9.32 -14.93 -0.14 -8.04 16 14 H 0.11 2.89 7.39 -52.49 -0.39 2.50 16 15 C 0.03 0.76 4.87 -17.47 -0.08 0.68 16 16 N -0.88 -21.89 9.48 55.50 0.53 -21.37 16 17 Si 0.92 19.40 29.60 -169.99 -5.03 14.37 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.22 4.27 4.91 -6.83 -0.03 4.24 16 22 C 0.24 5.31 12.94 -20.80 -0.27 5.04 16 23 N -0.47 -11.03 18.53 42.10 0.78 -10.25 16 24 C -0.15 -2.49 5.40 -26.59 -0.14 -2.64 16 25 C 0.06 0.96 6.57 37.21 0.24 1.20 16 26 O -0.38 -5.85 9.73 -35.23 -0.34 -6.19 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.51 6.49 -51.93 -0.34 0.17 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.79 6.57 -51.93 -0.34 0.45 16 36 H 0.08 1.12 7.41 -51.93 -0.39 0.74 16 37 H 0.08 1.33 4.40 -51.93 -0.23 1.10 16 38 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.13 2.52 6.46 -51.93 -0.34 2.18 16 40 H 0.08 1.21 6.68 -51.93 -0.35 0.86 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.91 5.96 -51.93 -0.31 1.60 16 43 H 0.05 0.89 6.49 -51.93 -0.34 0.55 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -29.29 342.44 -6.38 -35.68 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.69 Total: 4.44 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.56 Total: 2.45 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 1.00 Total: -41.98 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.27 Total: -20.12 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.29 -6.38 -35.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358975316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.714 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds