Wall clock time and date at job start Tue Mar 31 2020 07:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47477 * 2 1 4 4 C 1.53001 * 109.47278 * 120.00286 * 2 1 3 5 5 H 1.09007 * 109.47725 * 299.97310 * 4 2 1 6 6 C 1.53094 * 109.48392 * 179.97438 * 4 2 1 7 7 C 1.53178 * 109.16563 * 182.40853 * 6 4 2 8 8 H 1.08994 * 109.54829 * 176.93104 * 7 6 4 9 9 C 1.52999 * 109.53899 * 297.11096 * 7 6 4 10 10 C 1.50707 * 109.46847 * 185.00075 * 9 7 6 11 11 O 1.21290 * 119.99957 * 359.97438 * 10 9 7 12 12 N 1.34782 * 119.99770 * 179.97438 * 10 9 7 13 13 C 1.37091 * 119.99662 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00321 * 17.72166 * 13 12 10 15 15 C 1.38956 * 120.00054 * 197.72291 * 13 12 10 16 16 N 1.31407 * 119.99429 * 21.42330 * 15 13 12 17 17 Si 1.86796 * 120.00064 * 201.42298 * 15 13 12 18 18 H 1.48503 * 109.47071 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46912 * 119.99833 * 17 15 13 20 20 H 1.48499 * 109.47104 * 240.00110 * 17 15 13 21 21 C 1.46497 * 120.00151 * 0.02562 * 12 10 9 22 22 C 1.47198 * 109.47485 * 84.22660 * 21 12 10 23 23 N 6.46047 * 81.68765 * 95.53886 * 2 1 3 24 24 C 1.53181 * 109.03660 * 56.97270 * 7 6 4 25 25 C 1.53092 * 109.16294 * 303.02040 * 24 7 6 26 26 O 1.42901 * 109.48209 * 59.99598 * 4 2 1 27 27 H 1.09007 * 109.46999 * 300.00192 * 1 2 3 28 28 H 1.08995 * 109.46889 * 59.99837 * 1 2 3 29 29 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47539 * 240.00010 * 2 1 3 31 31 H 1.09000 * 109.47005 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47194 * 299.99977 * 3 2 1 33 33 H 1.09003 * 109.46681 * 59.99985 * 3 2 1 34 34 H 1.09005 * 109.51286 * 302.30883 * 6 4 2 35 35 H 1.08993 * 109.52566 * 62.43345 * 6 4 2 36 36 H 1.09000 * 109.47070 * 304.99792 * 9 7 6 37 37 H 1.08997 * 109.47715 * 64.99966 * 9 7 6 38 38 H 0.97006 * 119.99772 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.46856 * 204.23379 * 21 12 10 40 40 H 1.09003 * 109.46545 * 324.22576 * 21 12 10 41 41 H 1.09005 * 109.52234 * 62.92855 * 24 7 6 42 42 H 1.08998 * 109.52178 * 183.05158 * 24 7 6 43 43 H 1.08994 * 109.48275 * 297.62664 * 25 24 7 44 44 H 1.09007 * 109.47890 * 177.59123 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6771 -0.2073 2.1393 6 6 3.5709 -0.7220 1.2491 7 6 4.0735 -1.4976 2.4707 8 1 5.1620 -1.5487 2.4478 9 6 3.6212 -0.7884 3.7487 10 6 4.2182 -1.4819 4.9462 11 8 4.9345 -2.4485 4.7925 12 7 3.9561 -1.0279 6.1879 13 6 4.4987 -1.6590 7.2772 14 1 5.3435 -2.3203 7.1528 15 6 3.9618 -1.4480 8.5413 16 7 2.7284 -1.0124 8.6669 17 14 4.9933 -1.7837 10.0621 18 1 6.3374 -2.2640 9.6524 19 1 5.1331 -0.5334 10.8512 20 1 4.3291 -2.8210 10.8916 21 6 3.0905 0.1394 6.3735 22 6 1.6820 -0.2883 6.3677 23 7 0.5960 -0.6170 6.3627 24 6 3.4914 -2.9141 2.4374 25 6 1.9635 -2.8286 2.3917 26 8 1.5637 -2.0686 1.2494 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9348 -1.1997 0.3394 35 1 3.9357 0.3041 1.2926 36 1 3.9548 0.2491 3.7260 37 1 2.5337 -0.8189 3.8159 38 1 2.3537 -0.8647 9.5493 39 1 3.3218 0.6154 7.3264 40 1 3.2582 0.8486 5.5630 41 1 3.8537 -3.4361 1.5517 42 1 3.8002 -3.4559 3.3313 43 1 1.5994 -2.3426 3.2968 44 1 1.5451 -3.8329 2.3247 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358975316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:05 Heat of formation + Delta-G solvation = -81.769292 kcal Electronic energy + Delta-G solvation = -25133.085628 eV Core-core repulsion = 21663.646495 eV Total energy + Delta-G solvation = -3469.439133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41002 -40.08076 -37.66758 -36.42068 -36.12311 -35.28129 -33.73915 -31.02040 -29.89487 -28.99936 -27.90617 -26.47668 -25.19200 -24.52184 -21.52711 -21.12956 -19.85320 -19.42619 -18.21067 -17.93055 -17.43705 -17.09043 -16.50659 -16.10356 -15.98304 -15.42343 -15.15363 -14.89705 -14.70727 -14.65952 -14.46791 -14.05659 -13.83948 -13.67829 -13.39874 -13.32149 -13.08247 -12.95304 -12.89304 -12.53197 -12.41140 -12.33759 -12.18947 -12.09019 -12.05560 -12.01786 -11.81263 -11.65923 -11.29168 -11.13305 -10.92847 -10.34493 -10.14110 -9.88900 -8.39770 -5.94669 1.37803 1.47846 1.59836 1.83460 2.08167 2.25871 2.36085 2.82300 3.00744 3.13321 3.59146 3.69195 3.81839 3.87122 3.99703 4.08323 4.20484 4.22655 4.27868 4.41310 4.46514 4.51315 4.56871 4.68480 4.71930 4.80693 4.86855 4.89997 4.90750 4.98783 5.07408 5.11082 5.19517 5.25820 5.28341 5.36958 5.38866 5.49948 5.52128 5.52561 6.06638 6.33394 6.42223 7.00061 7.15135 7.38879 7.96926 8.64235 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.004506 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.891576 B = 6212.537477 C = 6661.808994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.145 4.145 4 C 0.085 3.915 5 H 0.049 0.951 6 C -0.134 4.134 7 C -0.066 4.066 8 H 0.074 0.926 9 C -0.128 4.128 10 C 0.452 3.548 11 O -0.607 6.607 12 N -0.459 5.459 13 C -0.338 4.338 14 H 0.082 0.918 15 C 0.004 3.996 16 N -0.895 5.895 17 Si 0.983 3.017 18 H -0.271 1.271 19 H -0.263 1.263 20 H -0.291 1.291 21 C 0.221 3.779 22 C 0.257 3.743 23 N -0.508 5.508 24 C -0.149 4.149 25 C 0.067 3.933 26 O -0.389 6.389 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.273 0.727 39 H 0.123 0.877 40 H 0.137 0.863 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.027 0.973 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.543 8.522 -14.178 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.202 4.202 4 C 0.028 3.972 5 H 0.067 0.933 6 C -0.171 4.171 7 C -0.085 4.085 8 H 0.093 0.907 9 C -0.168 4.168 10 C 0.243 3.757 11 O -0.492 6.492 12 N -0.179 5.179 13 C -0.465 4.465 14 H 0.100 0.900 15 C -0.197 4.197 16 N -0.534 5.534 17 Si 0.808 3.192 18 H -0.196 1.196 19 H -0.188 1.188 20 H -0.217 1.217 21 C 0.094 3.906 22 C -0.061 4.061 23 N -0.188 5.188 24 C -0.187 4.187 25 C -0.010 4.010 26 O -0.308 6.308 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.140 0.860 40 H 0.155 0.845 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.045 0.955 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.935 7.546 -14.240 16.142 hybrid contribution 0.667 -0.641 1.740 1.971 sum -0.268 6.904 -12.499 14.282 Atomic orbital electron populations 1.21765 0.95108 1.01438 1.01818 1.21112 0.96171 0.96696 0.96307 1.21876 1.01989 0.93647 1.02738 1.22384 0.93629 0.82482 0.98730 0.93270 1.22273 0.95347 1.02101 0.97420 1.20853 1.00581 0.94043 0.93047 0.90746 1.21815 1.00854 1.01801 0.92316 1.21046 0.84420 0.85400 0.84883 1.90481 1.42486 1.30212 1.85986 1.43855 1.42366 1.26411 1.05306 1.19627 1.13432 1.28230 0.85227 0.90035 1.25848 0.95795 0.96872 1.01216 1.69947 1.12247 1.45831 1.25343 0.85022 0.78361 0.78118 0.77681 1.19567 1.18784 1.21748 1.19058 0.77167 0.88232 1.06113 1.29761 0.95072 0.92048 0.89212 1.80851 1.15405 1.09222 1.13342 1.22182 0.95526 0.98371 1.02612 1.22459 0.94656 0.96047 0.87794 1.87845 1.75079 1.24377 1.43499 0.93409 0.91271 0.93632 0.90450 0.91094 0.91037 0.92408 0.90325 0.88082 0.86229 0.90579 0.91691 0.85953 0.84545 0.90836 0.92012 0.95465 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.05 71.98 0.65 -2.20 16 2 C -0.08 -1.60 2.72 -10.79 -0.03 -1.63 16 3 C -0.15 -2.04 8.84 71.98 0.64 -1.41 16 4 C 0.09 2.04 1.95 30.63 0.06 2.10 16 5 H 0.05 1.27 6.72 -2.38 -0.02 1.26 16 6 C -0.13 -2.92 4.49 30.69 0.14 -2.78 16 7 C -0.07 -1.93 2.33 -10.67 -0.02 -1.95 16 8 H 0.07 2.29 7.95 -2.39 -0.02 2.27 16 9 C -0.13 -4.01 3.21 29.85 0.10 -3.91 16 10 C 0.45 19.46 7.27 87.66 0.64 20.10 16 11 O -0.61 -30.62 13.66 -3.06 -0.04 -30.66 16 12 N -0.46 -20.70 2.60 -645.41 -1.68 -22.37 16 13 C -0.34 -17.31 9.32 84.04 0.78 -16.52 16 14 H 0.08 4.54 7.39 -2.91 -0.02 4.52 16 15 C 0.00 0.22 4.87 84.93 0.41 0.63 16 16 N -0.89 -44.47 9.48 21.66 0.21 -44.27 16 17 Si 0.98 39.88 29.60 68.60 2.03 41.91 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 20 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 21 C 0.22 8.22 4.91 84.57 0.42 8.63 16 22 C 0.26 10.95 12.94 89.46 1.16 12.11 16 23 N -0.51 -23.70 18.53 19.99 0.37 -23.33 16 24 C -0.15 -4.89 5.40 30.69 0.17 -4.73 16 25 C 0.07 2.16 6.57 72.01 0.47 2.63 16 26 O -0.39 -11.52 9.73 -148.98 -1.45 -12.97 16 27 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 1.05 7.68 -2.39 -0.02 1.03 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 0.86 6.49 -2.39 -0.02 0.85 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.10 1.69 6.57 -2.39 -0.02 1.67 16 36 H 0.12 2.82 7.41 -2.39 -0.02 2.80 16 37 H 0.08 2.49 4.40 -2.39 -0.01 2.48 16 38 H 0.27 13.11 8.31 -92.70 -0.77 12.34 16 39 H 0.12 4.71 6.46 -2.39 -0.02 4.70 16 40 H 0.14 3.52 6.68 -2.39 -0.02 3.51 16 41 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 42 H 0.06 2.50 5.96 -2.39 -0.01 2.48 16 43 H 0.03 0.99 6.49 -2.39 -0.02 0.97 16 44 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -65.14 342.44 6.01 -59.13 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 1.00 Total: 21.49 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.57 Total: 11.07 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -1.10 Total: -89.97 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.49 Total: -43.63 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -65.14 6.01 -59.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358975316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.635 kcal (2) G-P(sol) polarization free energy of solvation -65.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds