Wall clock time and date at job start Tue Mar 31 2020 07:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00344 * 2 1 4 4 N 1.46496 * 109.46949 * 234.72898 * 3 2 1 5 5 C 1.46500 * 119.99960 * 264.82119 * 4 3 2 6 6 C 1.50704 * 109.47128 * 87.76312 * 5 4 3 7 7 H 1.07995 * 119.99562 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00157 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00023 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00173 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47550 * 89.99919 * 10 8 6 12 12 H 1.48501 * 109.47169 * 210.00196 * 10 8 6 13 13 H 1.48499 * 109.46990 * 329.99887 * 10 8 6 14 14 C 1.34776 * 120.00472 * 84.82880 * 4 3 2 15 15 O 1.21284 * 119.99698 * 5.27084 * 14 4 3 16 16 C 1.50701 * 120.00236 * 185.27599 * 14 4 3 17 17 H 1.08999 * 109.66855 * 331.42715 * 16 14 4 18 18 C 1.53062 * 109.67510 * 91.92916 * 16 14 4 19 19 C 1.50176 * 109.89154 * 168.63538 * 18 16 14 20 20 O 1.21283 * 118.25045 * 162.44049 * 19 18 16 21 21 N 1.33359 * 123.50503 * 342.41561 * 19 18 16 22 22 C 1.45751 * 124.10895 * 2.20455 * 21 19 18 23 23 H 1.08996 * 109.30094 * 101.25309 * 22 21 19 24 24 C 1.52999 * 109.29874 * 220.83814 * 22 21 19 25 25 C 1.52995 * 109.47179 * 294.99781 * 24 22 21 26 26 C 1.52903 * 110.49247 * 340.96008 * 22 21 19 27 27 H 1.08001 * 120.00142 * 180.27193 * 1 2 3 28 28 H 1.07996 * 119.99551 * 0.27627 * 1 2 3 29 29 H 1.07999 * 119.99471 * 179.72959 * 2 1 3 30 30 H 1.09007 * 109.46689 * 354.72234 * 3 2 1 31 31 H 1.08994 * 109.47259 * 114.72396 * 3 2 1 32 32 H 1.08994 * 109.47776 * 207.76458 * 5 4 3 33 33 H 1.09001 * 109.47109 * 327.76811 * 5 4 3 34 34 H 0.97001 * 119.99734 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.40264 * 288.76289 * 18 16 14 36 36 H 1.08994 * 109.40296 * 48.59166 * 18 16 14 37 37 H 0.96999 * 117.94134 * 182.22055 * 21 19 18 38 38 H 1.09007 * 109.46943 * 55.00035 * 24 22 21 39 39 H 1.09006 * 109.47000 * 174.99395 * 24 22 21 40 40 H 1.08998 * 109.47282 * 60.00501 * 25 24 22 41 41 H 1.09003 * 109.47073 * 179.97438 * 25 24 22 42 42 H 1.08993 * 109.47559 * 299.99944 * 25 24 22 43 43 H 1.09000 * 109.58542 * 290.97061 * 26 22 21 44 44 H 1.09003 * 109.60850 * 170.49389 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9985 1.3291 -1.1276 5 6 4.3942 0.9297 -0.9307 6 6 4.5220 -0.5598 -1.1203 7 1 3.6509 -1.1499 -1.3637 8 6 5.7511 -1.1692 -0.9832 9 7 5.8627 -2.4692 -1.1492 10 14 7.2578 -0.1487 -0.5616 11 1 7.4080 -0.0738 0.9139 12 1 8.4651 -0.7818 -1.1505 13 1 7.0982 1.2208 -1.1130 14 6 2.5747 1.7186 -2.3463 15 8 1.4464 2.1400 -2.4898 16 6 3.5025 1.6307 -3.5305 17 1 4.5349 1.7336 -3.1962 18 6 3.3193 0.2814 -4.2296 19 6 4.0259 0.2924 -5.5547 20 8 4.2607 -0.7708 -6.0890 21 7 4.4085 1.4088 -6.1757 22 6 4.2326 2.7489 -5.6301 23 1 5.1787 3.0957 -5.2145 24 6 3.7938 3.6965 -6.7483 25 6 4.9162 3.8217 -7.7805 26 6 3.1697 2.7441 -4.5309 27 1 -0.5400 -0.9353 0.0044 28 1 -0.5399 0.9353 -0.0045 29 1 1.8500 -0.9353 0.0044 30 1 1.3590 2.1314 -0.0945 31 1 2.6175 1.4048 0.9334 32 1 5.0250 1.4437 -1.6558 33 1 4.7093 1.1959 0.0783 34 1 6.7276 -2.8978 -1.0530 35 1 3.7341 -0.5095 -3.6047 36 1 2.2569 0.0973 -4.3887 37 1 4.8301 1.3237 -7.0451 38 1 2.8996 3.3007 -7.2300 39 1 3.5757 4.6783 -6.3278 40 1 5.1342 2.8400 -8.2010 41 1 4.6034 4.4965 -8.5773 42 1 5.8103 4.2174 -7.2989 43 1 2.1898 2.5593 -4.9711 44 1 3.1679 3.7067 -4.0196 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359437782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:32 Heat of formation + Delta-G solvation = -62.646673 kcal Electronic energy + Delta-G solvation = -25055.126240 eV Core-core repulsion = 21586.516326 eV Total energy + Delta-G solvation = -3468.609914 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.49572 -39.03153 -36.86414 -35.58860 -33.97198 -33.01470 -32.22451 -31.86014 -28.90932 -28.14532 -26.44770 -24.72208 -23.01462 -22.27011 -21.71370 -19.57062 -19.15976 -18.23401 -17.10725 -17.02411 -16.60794 -16.04509 -15.60301 -15.03304 -14.63365 -14.44089 -14.23078 -13.81224 -13.69213 -13.53121 -13.34209 -13.21568 -12.79241 -12.62779 -12.38026 -12.09850 -11.91488 -11.67754 -11.41925 -11.26424 -11.08672 -10.94711 -10.92909 -10.79738 -10.55849 -10.42469 -10.23805 -9.73307 -9.57913 -9.19887 -8.90684 -8.82819 -8.71533 -7.87297 -6.23343 -4.25744 2.66561 2.99107 3.14587 3.19242 3.20564 3.25177 3.49366 3.80032 4.23505 4.60006 4.64673 4.77815 4.99997 5.06298 5.11771 5.15988 5.23845 5.38781 5.44395 5.48671 5.59740 5.63654 5.74902 5.75574 5.82814 5.87883 5.97920 6.02616 6.09070 6.10027 6.27571 6.35463 6.45752 6.53796 6.63478 7.01426 7.12623 7.15584 7.28493 7.40170 7.58091 8.03162 8.35536 8.52905 8.76242 8.84145 9.35004 10.88548 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.006558 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.193963 B = 4268.709591 C = 5527.203042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.148 3.852 4 N -0.586 5.586 5 C 0.204 3.796 6 C -0.543 4.543 7 H 0.083 0.917 8 C 0.079 3.921 9 N -0.884 5.884 10 Si 0.868 3.132 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.265 1.265 14 C 0.527 3.473 15 O -0.563 6.563 16 C -0.106 4.106 17 H 0.104 0.896 18 C -0.123 4.123 19 C 0.529 3.471 20 O -0.555 6.555 21 N -0.720 5.720 22 C 0.141 3.859 23 H 0.075 0.925 24 C -0.135 4.135 25 C -0.156 4.156 26 C -0.113 4.113 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.393 0.607 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 13.181 -5.434 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C 0.025 3.975 4 N -0.315 5.315 5 C 0.083 3.917 6 C -0.581 4.581 7 H 0.101 0.899 8 C -0.125 4.125 9 N -0.520 5.520 10 Si 0.695 3.305 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.190 1.190 14 C 0.315 3.685 15 O -0.443 6.443 16 C -0.128 4.128 17 H 0.122 0.878 18 C -0.163 4.163 19 C 0.317 3.683 20 O -0.433 6.433 21 N -0.374 5.374 22 C 0.036 3.964 23 H 0.093 0.907 24 C -0.173 4.173 25 C -0.213 4.213 26 C -0.151 4.151 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.230 0.770 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.277 12.702 -5.519 14.232 hybrid contribution 1.219 0.237 0.036 1.243 sum -2.058 12.939 -5.483 14.203 Atomic orbital electron populations 1.23707 0.95940 1.01075 1.02675 1.23485 0.95890 0.99840 0.97759 1.20417 0.92195 0.95354 0.89491 1.47941 1.11983 1.63691 1.07893 1.19950 0.77405 0.97170 0.97156 1.21335 0.96392 0.90371 1.49995 0.89921 1.24872 0.98553 0.94722 0.94395 1.69880 1.25121 1.08981 1.48044 0.86983 0.83418 0.80898 0.79228 1.19960 1.20902 1.18996 1.20187 0.87510 0.76857 0.83972 1.90607 1.20751 1.47945 1.85039 1.21380 1.01506 0.95925 0.93959 0.87803 1.21640 1.02260 0.99049 0.93336 1.20193 0.77938 0.83043 0.87110 1.90746 1.55841 1.30070 1.66595 1.45674 1.62731 1.05870 1.23101 1.21014 0.99103 0.82324 0.94008 0.90700 1.21919 0.99258 0.99794 0.96318 1.21807 0.98723 1.01766 0.99001 1.21800 0.99050 0.99186 0.95074 0.89020 0.89094 0.86208 0.90769 0.90026 0.94666 0.95215 0.92283 0.84882 0.88558 0.77039 0.91090 0.90340 0.92725 0.92397 0.92349 0.90023 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.08 14.32 29.01 0.42 -2.67 16 2 C -0.15 -2.66 9.80 -36.03 -0.35 -3.02 16 3 C 0.15 2.55 5.88 -5.20 -0.03 2.52 16 4 N -0.59 -11.15 2.45 -176.44 -0.43 -11.59 16 5 C 0.20 4.20 4.06 -5.19 -0.02 4.18 16 6 C -0.54 -13.38 8.70 -34.44 -0.30 -13.68 16 7 H 0.08 2.28 7.50 -52.49 -0.39 1.88 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 9 N -0.88 -25.19 13.96 55.43 0.77 -24.42 16 10 Si 0.87 19.31 27.47 -169.99 -4.67 14.64 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.27 -5.48 6.54 56.52 0.37 -5.11 16 14 C 0.53 9.88 6.65 -10.99 -0.07 9.81 16 15 O -0.56 -11.45 15.99 5.55 0.09 -11.36 16 16 C -0.11 -1.76 2.10 -91.56 -0.19 -1.95 16 17 H 0.10 1.75 5.72 -51.93 -0.30 1.45 16 18 C -0.12 -2.25 5.34 -28.10 -0.15 -2.40 16 19 C 0.53 9.53 7.71 -11.87 -0.09 9.44 16 20 O -0.55 -12.22 17.78 5.56 0.10 -12.13 16 21 N -0.72 -9.84 5.12 -54.86 -0.28 -10.12 16 22 C 0.14 1.57 3.08 -68.38 -0.21 1.36 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 C -0.13 -1.16 5.56 -26.73 -0.15 -1.31 16 25 C -0.16 -1.18 9.76 37.16 0.36 -0.82 16 26 C -0.11 -1.47 4.08 -26.60 -0.11 -1.58 16 27 H 0.09 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.09 1.34 7.84 -52.49 -0.41 0.93 16 29 H 0.12 2.37 7.57 -52.49 -0.40 1.97 16 30 H 0.07 1.23 7.16 -51.93 -0.37 0.86 16 31 H 0.08 1.28 7.86 -51.93 -0.41 0.87 16 32 H 0.04 0.71 4.84 -51.93 -0.25 0.46 16 33 H 0.03 0.60 7.32 -51.93 -0.38 0.22 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.13 2.90 6.77 -51.93 -0.35 2.55 16 36 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 37 H 0.39 4.86 7.04 -40.82 -0.29 4.57 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.43 6.67 -51.93 -0.35 0.08 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -30.71 353.73 -6.95 -37.66 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.86 Total: 10.14 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.00 Total: 1.85 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.06 Total: -46.13 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.19 Total: -23.48 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.67 Total: 14.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.71 -6.95 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359437782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.989 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds