Wall clock time and date at job start Tue Mar 31 2020 07:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00344 * 2 1 4 4 N 1.46496 * 109.46949 * 234.72898 * 3 2 1 5 5 C 1.46500 * 119.99960 * 264.82119 * 4 3 2 6 6 C 1.50704 * 109.47128 * 87.76312 * 5 4 3 7 7 H 1.07995 * 119.99562 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00157 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00023 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00173 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47550 * 89.99919 * 10 8 6 12 12 H 1.48501 * 109.47169 * 210.00196 * 10 8 6 13 13 H 1.48499 * 109.46990 * 329.99887 * 10 8 6 14 14 C 1.34776 * 120.00472 * 84.82880 * 4 3 2 15 15 O 1.21284 * 119.99698 * 5.27084 * 14 4 3 16 16 C 1.50701 * 120.00236 * 185.27599 * 14 4 3 17 17 H 1.08999 * 109.66855 * 331.42715 * 16 14 4 18 18 C 1.53062 * 109.67510 * 91.92916 * 16 14 4 19 19 C 1.50176 * 109.89154 * 168.63538 * 18 16 14 20 20 O 1.21283 * 118.25045 * 162.44049 * 19 18 16 21 21 N 1.33359 * 123.50503 * 342.41561 * 19 18 16 22 22 C 1.45751 * 124.10895 * 2.20455 * 21 19 18 23 23 H 1.08996 * 109.30094 * 101.25309 * 22 21 19 24 24 C 1.52999 * 109.29874 * 220.83814 * 22 21 19 25 25 C 1.52995 * 109.47179 * 294.99781 * 24 22 21 26 26 C 1.52903 * 110.49247 * 340.96008 * 22 21 19 27 27 H 1.08001 * 120.00142 * 180.27193 * 1 2 3 28 28 H 1.07996 * 119.99551 * 0.27627 * 1 2 3 29 29 H 1.07999 * 119.99471 * 179.72959 * 2 1 3 30 30 H 1.09007 * 109.46689 * 354.72234 * 3 2 1 31 31 H 1.08994 * 109.47259 * 114.72396 * 3 2 1 32 32 H 1.08994 * 109.47776 * 207.76458 * 5 4 3 33 33 H 1.09001 * 109.47109 * 327.76811 * 5 4 3 34 34 H 0.97001 * 119.99734 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.40264 * 288.76289 * 18 16 14 36 36 H 1.08994 * 109.40296 * 48.59166 * 18 16 14 37 37 H 0.96999 * 117.94134 * 182.22055 * 21 19 18 38 38 H 1.09007 * 109.46943 * 55.00035 * 24 22 21 39 39 H 1.09006 * 109.47000 * 174.99395 * 24 22 21 40 40 H 1.08998 * 109.47282 * 60.00501 * 25 24 22 41 41 H 1.09003 * 109.47073 * 179.97438 * 25 24 22 42 42 H 1.08993 * 109.47559 * 299.99944 * 25 24 22 43 43 H 1.09000 * 109.58542 * 290.97061 * 26 22 21 44 44 H 1.09003 * 109.60850 * 170.49389 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9985 1.3291 -1.1276 5 6 4.3942 0.9297 -0.9307 6 6 4.5220 -0.5598 -1.1203 7 1 3.6509 -1.1499 -1.3637 8 6 5.7511 -1.1692 -0.9832 9 7 5.8627 -2.4692 -1.1492 10 14 7.2578 -0.1487 -0.5616 11 1 7.4080 -0.0738 0.9139 12 1 8.4651 -0.7818 -1.1505 13 1 7.0982 1.2208 -1.1130 14 6 2.5747 1.7186 -2.3463 15 8 1.4464 2.1400 -2.4898 16 6 3.5025 1.6307 -3.5305 17 1 4.5349 1.7336 -3.1962 18 6 3.3193 0.2814 -4.2296 19 6 4.0259 0.2924 -5.5547 20 8 4.2607 -0.7708 -6.0890 21 7 4.4085 1.4088 -6.1757 22 6 4.2326 2.7489 -5.6301 23 1 5.1787 3.0957 -5.2145 24 6 3.7938 3.6965 -6.7483 25 6 4.9162 3.8217 -7.7805 26 6 3.1697 2.7441 -4.5309 27 1 -0.5400 -0.9353 0.0044 28 1 -0.5399 0.9353 -0.0045 29 1 1.8500 -0.9353 0.0044 30 1 1.3590 2.1314 -0.0945 31 1 2.6175 1.4048 0.9334 32 1 5.0250 1.4437 -1.6558 33 1 4.7093 1.1959 0.0783 34 1 6.7276 -2.8978 -1.0530 35 1 3.7341 -0.5095 -3.6047 36 1 2.2569 0.0973 -4.3887 37 1 4.8301 1.3237 -7.0451 38 1 2.8996 3.3007 -7.2300 39 1 3.5757 4.6783 -6.3278 40 1 5.1342 2.8400 -8.2010 41 1 4.6034 4.4965 -8.5773 42 1 5.8103 4.2174 -7.2989 43 1 2.1898 2.5593 -4.9711 44 1 3.1679 3.7067 -4.0196 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359437782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:31 Heat of formation + Delta-G solvation = -82.888437 kcal Electronic energy + Delta-G solvation = -25056.003989 eV Core-core repulsion = 21586.516326 eV Total energy + Delta-G solvation = -3469.487662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86051 -40.50742 -38.12277 -37.10824 -35.37291 -34.55743 -33.85156 -32.98960 -30.03420 -29.90868 -27.87177 -25.87213 -24.58976 -23.73374 -22.61288 -20.95304 -20.45778 -19.70475 -18.92044 -18.35523 -18.09326 -17.33899 -17.10464 -16.49048 -16.09384 -15.86780 -15.64752 -15.01423 -14.93761 -14.71690 -14.68592 -14.42562 -14.27592 -14.03324 -13.83397 -13.60955 -13.31087 -12.95794 -12.63662 -12.44883 -12.36129 -12.30218 -12.21406 -11.99475 -11.81758 -11.79122 -11.68809 -11.50762 -11.25258 -10.75167 -10.61897 -10.21317 -10.10103 -9.45938 -8.24351 -6.30310 1.28032 1.40382 1.41543 1.50105 1.52968 1.70012 2.27939 2.36783 2.37792 3.09785 3.42401 3.58919 3.70244 3.78524 4.02458 4.08678 4.11049 4.23512 4.25326 4.35718 4.51989 4.54756 4.57879 4.68030 4.72861 4.78429 4.87188 4.88038 4.95516 5.01691 5.08671 5.18589 5.19531 5.31680 5.46591 5.47192 5.65952 5.75387 5.85792 5.87366 6.22379 6.27577 6.61713 6.77284 7.16891 7.24891 7.36753 8.91322 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011519 B = 0.006558 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.193963 B = 4268.709591 C = 5527.203042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.178 4.178 3 C 0.146 3.854 4 N -0.590 5.590 5 C 0.210 3.790 6 C -0.527 4.527 7 H 0.037 0.963 8 C 0.017 3.983 9 N -0.943 5.943 10 Si 0.932 3.068 11 H -0.265 1.265 12 H -0.294 1.294 13 H -0.230 1.230 14 C 0.524 3.476 15 O -0.577 6.577 16 C -0.102 4.102 17 H 0.105 0.895 18 C -0.116 4.116 19 C 0.530 3.470 20 O -0.605 6.605 21 N -0.700 5.700 22 C 0.138 3.862 23 H 0.095 0.905 24 C -0.127 4.127 25 C -0.156 4.156 26 C -0.106 4.106 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.403 0.597 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 17.215 -5.645 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.319 5.319 5 C 0.088 3.912 6 C -0.566 4.566 7 H 0.055 0.945 8 C -0.182 4.182 9 N -0.582 5.582 10 Si 0.755 3.245 11 H -0.190 1.190 12 H -0.221 1.221 13 H -0.152 1.152 14 C 0.313 3.687 15 O -0.458 6.458 16 C -0.123 4.123 17 H 0.123 0.877 18 C -0.156 4.156 19 C 0.317 3.683 20 O -0.487 6.487 21 N -0.353 5.353 22 C 0.034 3.966 23 H 0.113 0.887 24 C -0.165 4.165 25 C -0.213 4.213 26 C -0.144 4.144 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.241 0.759 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.896 16.820 -5.732 18.004 hybrid contribution 0.923 -1.049 0.099 1.401 sum -1.973 15.771 -5.633 16.863 Atomic orbital electron populations 1.23913 0.95208 1.02411 0.99621 1.23333 0.96668 0.98984 1.00702 1.20567 0.92312 0.95152 0.89576 1.47996 1.11744 1.63410 1.08753 1.19823 0.78805 0.94138 0.98455 1.21476 0.94668 0.92478 1.47951 0.94477 1.25771 1.02184 0.95643 0.94596 1.70068 1.25726 1.11459 1.50996 0.85945 0.78449 0.80661 0.79400 1.19004 1.22082 1.15241 1.20531 0.87603 0.76285 0.84281 1.90590 1.21355 1.48669 1.85222 1.21384 1.01034 0.95939 0.93935 0.87715 1.21405 1.01675 0.99110 0.93445 1.20057 0.77873 0.83496 0.86831 1.90721 1.58133 1.32190 1.67680 1.45597 1.60792 1.05908 1.22978 1.21315 0.99585 0.81105 0.94598 0.88698 1.21880 0.99347 0.99797 0.95484 1.21820 0.98623 1.01810 0.99079 1.21817 0.99314 0.98590 0.94671 0.87966 0.87334 0.89532 0.89567 0.88498 0.92962 0.93403 0.92688 0.89150 0.89049 0.75887 0.91538 0.88222 0.93353 0.91227 0.91619 0.90621 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.30 14.32 67.78 0.97 -4.33 16 2 C -0.18 -6.35 9.80 25.64 0.25 -6.10 16 3 C 0.15 4.86 5.88 85.63 0.50 5.37 16 4 N -0.59 -21.91 2.45 -830.51 -2.04 -23.94 16 5 C 0.21 8.35 4.06 85.63 0.35 8.70 16 6 C -0.53 -26.76 8.70 25.60 0.22 -26.54 16 7 H 0.04 2.19 7.50 -2.91 -0.02 2.17 16 8 C 0.02 0.89 5.47 84.65 0.46 1.35 16 9 N -0.94 -56.48 13.96 21.44 0.30 -56.18 16 10 Si 0.93 39.22 27.47 68.60 1.88 41.11 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.23 -8.27 6.54 99.48 0.65 -7.62 16 14 C 0.52 19.07 6.65 87.66 0.58 19.65 16 15 O -0.58 -22.56 15.99 -3.04 -0.05 -22.61 16 16 C -0.10 -3.24 2.10 -11.40 -0.02 -3.27 16 17 H 0.10 3.31 5.72 -2.39 -0.01 3.30 16 18 C -0.12 -4.39 5.34 29.70 0.16 -4.23 16 19 C 0.53 19.33 7.71 87.71 0.68 20.01 16 20 O -0.60 -27.71 17.78 -3.04 -0.05 -27.77 16 21 N -0.70 -18.08 5.12 -446.67 -2.29 -20.37 16 22 C 0.14 2.62 3.08 45.10 0.14 2.76 16 23 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 24 C -0.13 -1.69 5.56 30.59 0.17 -1.52 16 25 C -0.16 -1.81 9.76 71.98 0.70 -1.10 16 26 C -0.11 -2.46 4.08 30.68 0.13 -2.34 16 27 H 0.10 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.11 2.96 7.84 -2.91 -0.02 2.94 16 29 H 0.09 3.67 7.57 -2.91 -0.02 3.65 16 30 H 0.09 2.67 7.16 -2.38 -0.02 2.66 16 31 H 0.10 2.87 7.86 -2.39 -0.02 2.85 16 32 H 0.05 1.95 4.84 -2.39 -0.01 1.93 16 33 H 0.05 1.78 7.32 -2.39 -0.02 1.76 16 34 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.09 4.24 6.77 -2.39 -0.02 4.22 16 36 H 0.09 3.47 8.09 -2.39 -0.02 3.45 16 37 H 0.40 9.29 7.04 -92.71 -0.65 8.64 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 39 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.05 0.62 6.67 -2.39 -0.02 0.60 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 1.89 8.06 -2.39 -0.02 1.88 16 44 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.55 353.73 3.33 -67.22 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 0.29 Total: 34.15 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.29 Total: 8.40 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.02 Total: -100.49 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.10 Total: -50.38 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.88 Total: 41.11 kcal Total: -70.55 3.33 -67.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359437782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.673 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds