Wall clock time and date at job start Tue Mar 31 2020 07:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00122 * 2 1 4 4 N 1.46500 * 109.47249 * 124.45773 * 3 2 1 5 5 C 1.46498 * 120.00022 * 275.83524 * 4 3 2 6 6 C 1.50695 * 109.47359 * 89.99639 * 5 4 3 7 7 H 1.08004 * 119.99960 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00166 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00050 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46912 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47080 * 120.00038 * 10 8 6 13 13 H 1.48494 * 109.47078 * 240.00092 * 10 8 6 14 14 C 1.34776 * 120.00273 * 95.83609 * 4 3 2 15 15 O 1.21280 * 120.00159 * 185.18698 * 14 4 3 16 16 C 1.50697 * 119.99832 * 5.18209 * 14 4 3 17 17 H 1.08998 * 109.67211 * 33.15704 * 16 14 4 18 18 C 1.53071 * 109.67423 * 153.65396 * 16 14 4 19 19 C 1.50179 * 109.89304 * 70.83254 * 18 16 14 20 20 O 1.21276 * 118.24591 * 197.60296 * 19 18 16 21 21 N 1.33358 * 123.50199 * 17.58709 * 19 18 16 22 22 C 1.45748 * 124.11402 * 357.79329 * 21 19 18 23 23 H 1.08996 * 109.30398 * 258.95846 * 22 21 19 24 24 C 1.53001 * 109.30119 * 139.36800 * 22 21 19 25 25 C 1.52996 * 109.47104 * 65.00235 * 24 22 21 26 26 C 1.52906 * 110.49203 * 19.04148 * 22 21 19 27 27 H 1.07994 * 120.00171 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99618 * 359.71720 * 1 2 3 29 29 H 1.08005 * 119.99968 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47324 * 244.45726 * 3 2 1 31 31 H 1.09001 * 109.47289 * 4.45385 * 3 2 1 32 32 H 1.09005 * 109.47540 * 210.00274 * 5 4 3 33 33 H 1.09007 * 109.47121 * 329.99616 * 5 4 3 34 34 H 0.96997 * 120.00516 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.40002 * 190.96504 * 18 16 14 36 36 H 1.08994 * 109.39837 * 310.70367 * 18 16 14 37 37 H 0.97006 * 117.93708 * 177.77536 * 21 19 18 38 38 H 1.09000 * 109.46893 * 185.00798 * 24 22 21 39 39 H 1.09006 * 109.46884 * 305.00122 * 24 22 21 40 40 H 1.08991 * 109.47118 * 300.00186 * 25 24 22 41 41 H 1.08997 * 109.46920 * 59.99770 * 25 24 22 42 42 H 1.08997 * 109.47209 * 179.97438 * 25 24 22 43 43 H 1.09005 * 109.60856 * 189.50948 * 26 22 21 44 44 H 1.09001 * 109.58726 * 69.02839 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9845 1.3372 1.1389 5 6 2.5040 1.7562 2.4579 6 6 2.0068 0.5530 3.2169 7 1 2.0453 -0.4260 2.7624 8 6 1.5037 0.7018 4.4920 9 7 1.4573 1.8938 5.0456 10 14 0.8881 -0.7898 5.4332 11 1 1.0480 -2.0049 4.5944 12 1 1.6733 -0.9444 6.6842 13 1 -0.5466 -0.6058 5.7687 14 6 4.2738 0.9814 0.9732 15 8 5.0133 0.9172 1.9324 16 6 4.7966 0.6631 -0.4039 17 1 4.2864 1.2818 -1.1421 18 6 6.3025 0.9322 -0.4583 19 6 7.0357 -0.1009 0.3483 20 8 8.1774 0.1357 0.6821 21 7 6.4983 -1.2642 0.7173 22 6 5.1258 -1.6594 0.4268 23 1 4.5128 -1.5128 1.3161 24 6 5.0979 -3.1371 0.0312 25 6 5.5233 -3.9930 1.2259 26 6 4.5575 -0.8189 -0.7171 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9353 0.0046 29 1 1.8500 -0.9354 0.0004 30 1 2.6290 1.3982 -0.9273 31 1 1.3579 2.1320 0.0798 32 1 3.3195 2.2229 3.0104 33 1 1.6904 2.4717 2.3378 34 1 1.1031 1.9986 5.9425 35 1 6.6406 0.8902 -1.4937 36 1 6.5083 1.9222 -0.0515 37 1 7.0561 -1.8867 1.2097 38 1 4.0880 -3.4129 -0.2721 39 1 5.7849 -3.3041 -0.7985 40 1 6.5332 -3.7170 1.5292 41 1 4.8364 -3.8258 2.0555 42 1 5.5030 -5.0457 0.9443 43 1 3.4875 -1.0048 -0.8111 44 1 5.0599 -1.0815 -1.6481 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359437797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:42 Heat of formation + Delta-G solvation = -58.598937 kcal Electronic energy + Delta-G solvation = -25547.467983 eV Core-core repulsion = 22079.033592 eV Total energy + Delta-G solvation = -3468.434391 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77802 -38.66708 -36.71667 -35.71663 -33.82815 -32.97990 -32.09669 -31.81689 -29.00772 -27.87254 -25.64744 -25.04322 -23.50008 -22.19181 -21.52936 -20.07617 -19.68127 -17.76964 -17.10764 -16.48753 -16.39997 -16.08819 -15.58082 -15.08251 -14.74206 -14.54524 -14.14384 -13.96174 -13.68445 -13.50884 -13.34094 -13.09311 -12.65787 -12.41606 -12.18562 -11.87980 -11.71920 -11.60831 -11.39259 -11.26925 -11.25592 -10.99628 -10.92388 -10.82916 -10.72929 -10.61909 -10.22282 -9.60614 -9.46716 -9.01593 -8.88144 -8.74134 -8.43285 -7.73690 -6.04574 -4.07455 2.59936 3.02186 3.27530 3.29621 3.36002 3.38336 3.58615 3.88117 4.42841 4.54881 4.57519 4.67360 4.85806 5.01156 5.06896 5.15838 5.23645 5.30623 5.32323 5.42863 5.43664 5.50906 5.62920 5.67352 5.73785 5.78336 5.84365 5.90261 5.96381 6.04060 6.11812 6.24152 6.27350 6.91905 6.97714 7.06935 7.09978 7.40036 7.51603 7.67364 7.91327 8.22758 8.34020 8.56021 8.88661 9.03734 9.56625 11.04057 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.006017 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.654188 B = 4652.480706 C = 4886.340551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 C 0.136 3.864 4 N -0.592 5.592 5 C 0.247 3.753 6 C -0.512 4.512 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.505 3.495 15 O -0.525 6.525 16 C -0.120 4.120 17 H 0.102 0.898 18 C -0.116 4.116 19 C 0.540 3.460 20 O -0.571 6.571 21 N -0.703 5.703 22 C 0.135 3.865 23 H 0.085 0.915 24 C -0.132 4.132 25 C -0.157 4.157 26 C -0.121 4.121 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.395 0.605 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -6.821 -16.225 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.176 4.176 3 C 0.012 3.988 4 N -0.323 5.323 5 C 0.129 3.871 6 C -0.551 4.551 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.291 3.709 15 O -0.401 6.401 16 C -0.142 4.142 17 H 0.120 0.880 18 C -0.156 4.156 19 C 0.328 3.672 20 O -0.451 6.451 21 N -0.355 5.355 22 C 0.030 3.970 23 H 0.103 0.897 24 C -0.170 4.170 25 C -0.214 4.214 26 C -0.159 4.159 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.231 0.769 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.181 -6.441 -15.465 16.894 hybrid contribution -0.559 -1.095 0.947 1.552 sum 1.622 -7.536 -14.518 16.438 Atomic orbital electron populations 1.23675 0.95843 1.01439 1.00658 1.23211 0.96225 0.98477 0.99723 1.20637 0.92919 0.95813 0.89416 1.48253 1.07608 1.64866 1.11579 1.19290 0.95144 0.95574 0.77141 1.21371 1.40243 0.93994 0.99526 0.92421 1.24914 0.96063 0.95849 0.97353 1.69930 1.46492 1.21712 1.15418 0.86513 0.78275 0.83023 0.80017 1.19891 1.21017 1.21062 1.20143 0.82691 0.78230 0.89861 1.90741 1.56615 1.51197 1.41540 1.21592 0.96501 0.98327 0.97781 0.87987 1.21470 0.93138 0.99919 1.01047 1.19738 0.86275 0.82013 0.79155 1.90703 1.19578 1.77791 1.56981 1.45360 1.13557 1.18832 1.57734 1.21031 0.83537 0.93618 0.98806 0.89702 1.21895 1.02519 0.93798 0.98810 1.21799 1.01672 0.99454 0.98483 1.21952 1.02960 0.92664 0.98348 0.88988 0.88690 0.87805 0.90609 0.90487 0.94040 0.95162 0.92869 0.88130 0.87934 0.76935 0.90476 0.91420 0.92759 0.91979 0.92449 0.89001 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 14.32 29.01 0.42 -2.00 16 2 C -0.16 -2.22 8.88 -36.03 -0.32 -2.54 16 3 C 0.14 1.96 5.70 -5.20 -0.03 1.93 16 4 N -0.59 -11.45 2.45 -176.43 -0.43 -11.88 16 5 C 0.25 6.19 5.16 -5.20 -0.03 6.16 16 6 C -0.51 -13.88 9.09 -34.44 -0.31 -14.19 16 7 H 0.06 1.56 7.77 -52.48 -0.41 1.15 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 10 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.51 9.56 5.54 -10.99 -0.06 9.50 16 15 O -0.52 -12.54 14.03 5.56 0.08 -12.46 16 16 C -0.12 -1.58 2.30 -91.56 -0.21 -1.79 16 17 H 0.10 1.04 6.13 -51.93 -0.32 0.72 16 18 C -0.12 -1.60 5.25 -28.10 -0.15 -1.75 16 19 C 0.54 9.30 6.38 -11.87 -0.08 9.22 16 20 O -0.57 -11.97 17.78 5.56 0.10 -11.87 16 21 N -0.70 -10.63 4.88 -54.86 -0.27 -10.90 16 22 C 0.14 1.79 2.34 -68.38 -0.16 1.63 16 23 H 0.09 1.45 7.18 -51.93 -0.37 1.08 16 24 C -0.13 -1.33 5.57 -26.73 -0.15 -1.48 16 25 C -0.16 -1.64 9.76 37.16 0.36 -1.27 16 26 C -0.12 -1.33 4.90 -26.60 -0.13 -1.46 16 27 H 0.09 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.09 1.24 7.84 -52.49 -0.41 0.83 16 29 H 0.10 1.41 6.29 -52.48 -0.33 1.08 16 30 H 0.08 0.82 5.59 -51.93 -0.29 0.53 16 31 H 0.08 1.10 7.63 -51.93 -0.40 0.70 16 32 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 33 H 0.03 0.78 7.95 -51.92 -0.41 0.36 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.55 8.10 -51.93 -0.42 1.13 16 37 H 0.39 5.77 7.04 -40.82 -0.29 5.48 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.57 6.67 -51.93 -0.35 0.22 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.93 5.43 -51.93 -0.28 0.64 16 44 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -34.94 350.24 -7.23 -42.17 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.76 Total: 5.13 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -0.94 Total: 3.54 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.04 Total: -48.41 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: 0.18 Total: -24.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.94 -7.23 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359437797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.428 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds