Wall clock time and date at job start Tue Mar 31 2020 07:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00122 * 2 1 4 4 N 1.46500 * 109.47249 * 124.45773 * 3 2 1 5 5 C 1.46498 * 120.00022 * 275.83524 * 4 3 2 6 6 C 1.50695 * 109.47359 * 89.99639 * 5 4 3 7 7 H 1.08004 * 119.99960 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00166 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00050 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00060 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46912 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47080 * 120.00038 * 10 8 6 13 13 H 1.48494 * 109.47078 * 240.00092 * 10 8 6 14 14 C 1.34776 * 120.00273 * 95.83609 * 4 3 2 15 15 O 1.21280 * 120.00159 * 185.18698 * 14 4 3 16 16 C 1.50697 * 119.99832 * 5.18209 * 14 4 3 17 17 H 1.08998 * 109.67211 * 33.15704 * 16 14 4 18 18 C 1.53071 * 109.67423 * 153.65396 * 16 14 4 19 19 C 1.50179 * 109.89304 * 70.83254 * 18 16 14 20 20 O 1.21276 * 118.24591 * 197.60296 * 19 18 16 21 21 N 1.33358 * 123.50199 * 17.58709 * 19 18 16 22 22 C 1.45748 * 124.11402 * 357.79329 * 21 19 18 23 23 H 1.08996 * 109.30398 * 258.95846 * 22 21 19 24 24 C 1.53001 * 109.30119 * 139.36800 * 22 21 19 25 25 C 1.52996 * 109.47104 * 65.00235 * 24 22 21 26 26 C 1.52906 * 110.49203 * 19.04148 * 22 21 19 27 27 H 1.07994 * 120.00171 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99618 * 359.71720 * 1 2 3 29 29 H 1.08005 * 119.99968 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47324 * 244.45726 * 3 2 1 31 31 H 1.09001 * 109.47289 * 4.45385 * 3 2 1 32 32 H 1.09005 * 109.47540 * 210.00274 * 5 4 3 33 33 H 1.09007 * 109.47121 * 329.99616 * 5 4 3 34 34 H 0.96997 * 120.00516 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.40002 * 190.96504 * 18 16 14 36 36 H 1.08994 * 109.39837 * 310.70367 * 18 16 14 37 37 H 0.97006 * 117.93708 * 177.77536 * 21 19 18 38 38 H 1.09000 * 109.46893 * 185.00798 * 24 22 21 39 39 H 1.09006 * 109.46884 * 305.00122 * 24 22 21 40 40 H 1.08991 * 109.47118 * 300.00186 * 25 24 22 41 41 H 1.08997 * 109.46920 * 59.99770 * 25 24 22 42 42 H 1.08997 * 109.47209 * 179.97438 * 25 24 22 43 43 H 1.09005 * 109.60856 * 189.50948 * 26 22 21 44 44 H 1.09001 * 109.58726 * 69.02839 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9845 1.3372 1.1389 5 6 2.5040 1.7562 2.4579 6 6 2.0068 0.5530 3.2169 7 1 2.0453 -0.4260 2.7624 8 6 1.5037 0.7018 4.4920 9 7 1.4573 1.8938 5.0456 10 14 0.8881 -0.7898 5.4332 11 1 1.0480 -2.0049 4.5944 12 1 1.6733 -0.9444 6.6842 13 1 -0.5466 -0.6058 5.7687 14 6 4.2738 0.9814 0.9732 15 8 5.0133 0.9172 1.9324 16 6 4.7966 0.6631 -0.4039 17 1 4.2864 1.2818 -1.1421 18 6 6.3025 0.9322 -0.4583 19 6 7.0357 -0.1009 0.3483 20 8 8.1774 0.1357 0.6821 21 7 6.4983 -1.2642 0.7173 22 6 5.1258 -1.6594 0.4268 23 1 4.5128 -1.5128 1.3161 24 6 5.0979 -3.1371 0.0312 25 6 5.5233 -3.9930 1.2259 26 6 4.5575 -0.8189 -0.7171 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5399 0.9353 0.0046 29 1 1.8500 -0.9354 0.0004 30 1 2.6290 1.3982 -0.9273 31 1 1.3579 2.1320 0.0798 32 1 3.3195 2.2229 3.0104 33 1 1.6904 2.4717 2.3378 34 1 1.1031 1.9986 5.9425 35 1 6.6406 0.8902 -1.4937 36 1 6.5083 1.9222 -0.0515 37 1 7.0561 -1.8867 1.2097 38 1 4.0880 -3.4129 -0.2721 39 1 5.7849 -3.3041 -0.7985 40 1 6.5332 -3.7170 1.5292 41 1 4.8364 -3.8258 2.0555 42 1 5.5030 -5.0457 0.9443 43 1 3.4875 -1.0048 -0.8111 44 1 5.0599 -1.0815 -1.6481 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359437797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:41 Heat of formation + Delta-G solvation = -83.354680 kcal Electronic energy + Delta-G solvation = -25548.541472 eV Core-core repulsion = 22079.033592 eV Total energy + Delta-G solvation = -3469.507880 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.03500 -40.11889 -37.93127 -37.17794 -35.21697 -34.58188 -33.58381 -32.96449 -30.03017 -29.71573 -26.87924 -26.44608 -24.93733 -23.63393 -22.50816 -21.37858 -20.82852 -19.08817 -18.59423 -18.29332 -17.74195 -17.32549 -16.99937 -16.46067 -16.23751 -15.93860 -15.55414 -15.15600 -14.70142 -14.65692 -14.55656 -14.29473 -14.16821 -13.92141 -13.52877 -13.23254 -13.03982 -12.87692 -12.85348 -12.71135 -12.59755 -12.34658 -12.28036 -12.20594 -11.92832 -11.84940 -11.72001 -11.52452 -10.77631 -10.63575 -10.41422 -10.09965 -9.99070 -9.40440 -8.19232 -6.30056 1.33177 1.35786 1.45487 1.48812 1.72383 1.90179 2.33615 2.42590 2.53999 3.11573 3.50854 3.57635 3.64147 3.80122 3.90289 4.16109 4.20867 4.24504 4.31894 4.36326 4.50011 4.60685 4.64858 4.74894 4.78900 4.83582 4.88909 4.99188 5.04238 5.07606 5.09782 5.19246 5.25357 5.28386 5.38351 5.60190 5.80932 5.86606 5.87525 6.08282 6.12519 6.47135 6.75629 6.84610 7.28444 7.34003 7.54543 8.88445 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.006017 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.654188 B = 4652.480706 C = 4886.340551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.170 4.170 3 C 0.130 3.870 4 N -0.595 5.595 5 C 0.263 3.737 6 C -0.513 4.513 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.956 3.044 11 H -0.263 1.263 12 H -0.290 1.290 13 H -0.272 1.272 14 C 0.497 3.503 15 O -0.587 6.587 16 C -0.106 4.106 17 H 0.147 0.853 18 C -0.113 4.113 19 C 0.527 3.473 20 O -0.622 6.622 21 N -0.700 5.700 22 C 0.131 3.869 23 H 0.037 0.963 24 C -0.122 4.122 25 C -0.160 4.160 26 C -0.116 4.116 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.076 0.924 32 H -0.010 1.010 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.391 0.609 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -8.719 -19.696 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.189 4.189 3 C 0.008 3.992 4 N -0.325 5.325 5 C 0.142 3.858 6 C -0.551 4.551 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.782 3.218 11 H -0.187 1.187 12 H -0.216 1.216 13 H -0.197 1.197 14 C 0.286 3.714 15 O -0.468 6.468 16 C -0.127 4.127 17 H 0.165 0.835 18 C -0.153 4.153 19 C 0.317 3.683 20 O -0.506 6.506 21 N -0.349 5.349 22 C 0.026 3.974 23 H 0.055 0.945 24 C -0.160 4.160 25 C -0.217 4.217 26 C -0.154 4.154 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.094 0.906 32 H 0.008 0.992 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.102 0.898 37 H 0.227 0.773 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.901 -8.366 -18.997 20.777 hybrid contribution -0.186 -0.487 2.072 2.137 sum 0.715 -8.853 -16.925 19.114 Atomic orbital electron populations 1.23880 0.95906 1.02223 0.99506 1.23248 0.96484 0.98442 1.00680 1.20986 0.92828 0.96260 0.89109 1.48198 1.08930 1.64573 1.10802 1.18686 0.92685 0.94546 0.79909 1.21616 1.39317 0.94390 0.99818 0.92516 1.25781 0.96560 0.98550 0.98540 1.70055 1.47726 1.23814 1.15828 0.85528 0.78071 0.79932 0.78288 1.18701 1.21641 1.19716 1.21265 0.81776 0.76474 0.91867 1.90716 1.58076 1.53626 1.44336 1.21634 0.95919 1.00903 0.94243 0.83506 1.21555 0.93216 0.97568 1.02927 1.20473 0.85951 0.82769 0.79139 1.90669 1.21906 1.78816 1.59250 1.45478 1.14299 1.18316 1.56780 1.21148 0.81593 0.96535 0.98100 0.94461 1.21863 1.04268 0.90943 0.98915 1.21827 1.00642 1.01012 0.98240 1.22088 1.04416 0.90018 0.98859 0.87687 0.88579 0.87047 0.85932 0.90593 0.99213 0.96240 0.92828 0.83227 0.89815 0.77324 0.88503 0.89166 0.93497 0.94278 0.90361 0.87308 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.32 14.32 67.78 0.97 -3.35 16 2 C -0.17 -4.29 8.88 25.64 0.23 -4.06 16 3 C 0.13 3.40 5.70 85.63 0.49 3.89 16 4 N -0.60 -22.86 2.45 -830.50 -2.04 -24.90 16 5 C 0.26 13.70 5.16 85.63 0.44 14.14 16 6 C -0.51 -28.41 9.09 25.60 0.23 -28.18 16 7 H 0.06 3.09 7.77 -2.91 -0.02 3.07 16 8 C 0.00 0.20 5.46 84.66 0.46 0.67 16 9 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 10 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 14 C 0.50 18.71 5.54 87.66 0.49 19.19 16 15 O -0.59 -29.39 14.03 -3.03 -0.04 -29.43 16 16 C -0.11 -2.42 2.30 -11.40 -0.03 -2.45 16 17 H 0.15 2.09 6.13 -2.39 -0.01 2.07 16 18 C -0.11 -2.87 5.25 29.71 0.16 -2.71 16 19 C 0.53 17.99 6.38 87.71 0.56 18.55 16 20 O -0.62 -26.83 17.78 -3.02 -0.05 -26.89 16 21 N -0.70 -20.92 4.88 -446.67 -2.18 -23.09 16 22 C 0.13 3.23 2.34 45.10 0.11 3.33 16 23 H 0.04 1.29 7.18 -2.39 -0.02 1.27 16 24 C -0.12 -2.08 5.57 30.59 0.17 -1.91 16 25 C -0.16 -3.14 9.76 71.98 0.70 -2.44 16 26 C -0.12 -2.03 4.90 30.68 0.15 -1.88 16 27 H 0.10 2.27 8.06 -2.91 -0.02 2.24 16 28 H 0.10 2.29 7.84 -2.91 -0.02 2.27 16 29 H 0.11 2.64 6.29 -2.91 -0.02 2.63 16 30 H 0.12 2.02 5.59 -2.38 -0.01 2.01 16 31 H 0.08 2.02 7.63 -2.39 -0.02 2.00 16 32 H -0.01 -0.63 7.50 -2.38 -0.02 -0.65 16 33 H 0.02 1.04 7.95 -2.38 -0.02 1.03 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.15 2.33 8.14 -2.39 -0.02 2.32 16 36 H 0.08 2.48 8.10 -2.39 -0.02 2.46 16 37 H 0.39 11.72 7.04 -92.70 -0.65 11.07 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.05 0.97 6.67 -2.39 -0.02 0.95 16 41 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.11 1.61 5.43 -2.38 -0.01 1.60 16 44 H 0.12 1.25 8.11 -2.39 -0.02 1.23 16 Total: -1.00 -83.61 350.24 3.47 -80.14 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.35 Total: 20.86 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 5.13 Total: 12.79 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -3.93 Total: -104.42 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -0.10 Total: -56.32 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -83.61 3.47 -80.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359437797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.217 kcal (2) G-P(sol) polarization free energy of solvation -83.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds