Wall clock time and date at job start Tue Mar 31 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47636 * 2 1 4 4 N 1.30006 * 127.33414 * 270.20222 * 3 2 1 5 5 O 1.20666 * 112.30293 * 180.29447 * 4 3 2 6 6 C 1.33491 * 113.15045 * 359.68452 * 5 4 3 7 7 C 1.50705 * 126.82500 * 180.02562 * 6 5 4 8 8 C 1.37353 * 106.34654 * 0.02562 * 6 5 4 9 9 C 1.47398 * 128.56714 * 180.02562 * 8 6 5 10 10 O 1.21610 * 120.00362 * 89.74613 * 9 8 6 11 11 N 1.34784 * 119.99800 * 270.01956 * 9 8 6 12 12 C 1.46499 * 119.99893 * 179.72628 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46870 * 299.99298 * 13 12 11 15 15 C 1.53000 * 109.47499 * 59.99732 * 13 12 11 16 16 C 1.53000 * 109.46990 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47356 * 179.97438 * 16 13 12 18 18 H 1.07998 * 119.99756 * 359.97438 * 17 16 13 19 19 C 1.37878 * 120.00089 * 180.02562 * 17 16 13 20 20 N 1.31512 * 119.99687 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00010 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46755 * 90.00339 * 21 19 17 23 23 H 1.48502 * 109.46948 * 210.00095 * 21 19 17 24 24 H 1.48498 * 109.46866 * 330.00353 * 21 19 17 25 25 H 1.08999 * 109.47219 * 59.99607 * 1 2 3 26 26 H 1.09001 * 109.47627 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46898 * 300.00034 * 1 2 3 28 28 H 1.08995 * 109.47181 * 239.99381 * 2 1 3 29 29 H 1.09005 * 109.46824 * 120.00176 * 2 1 3 30 30 H 1.09004 * 109.47313 * 269.97808 * 7 6 5 31 31 H 1.09002 * 109.46871 * 29.98157 * 7 6 5 32 32 H 1.09000 * 109.46945 * 149.97522 * 7 6 5 33 33 H 0.97005 * 119.99846 * 359.72416 * 11 9 8 34 34 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 35 35 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 36 36 H 1.09007 * 109.46830 * 60.00773 * 14 13 12 37 37 H 1.09005 * 109.46980 * 180.02562 * 14 13 12 38 38 H 1.08994 * 109.47292 * 300.00516 * 14 13 12 39 39 H 1.08992 * 109.46855 * 59.99654 * 15 13 12 40 40 H 1.08995 * 109.47095 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.46768 * 299.99888 * 15 13 12 42 42 H 1.09005 * 109.47033 * 299.99952 * 16 13 12 43 43 H 1.08999 * 109.47677 * 59.99180 * 16 13 12 44 44 H 0.97003 * 120.00152 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2919 2.1653 -1.0337 5 8 2.6869 3.2617 -0.7208 6 6 2.7524 3.4385 0.6007 7 6 3.2004 4.6821 1.3246 8 6 2.3303 2.2617 1.1696 9 6 2.2103 1.9233 2.5992 10 8 1.1711 2.1439 3.1912 11 7 3.2541 1.3744 3.2517 12 6 3.1368 1.0435 4.6740 13 6 4.4529 0.4387 5.1671 14 6 4.7598 -0.8318 4.3716 15 6 5.5843 1.4496 4.9702 16 6 4.3302 0.0925 6.6524 17 6 5.6262 -0.5038 7.1379 18 1 6.4544 -0.6243 6.4553 19 6 5.7543 -0.8965 8.4534 20 7 6.8852 -1.4174 8.8769 21 14 4.3216 -0.6888 9.6339 22 1 3.4794 -1.9117 9.6102 23 1 4.8402 -0.4714 11.0083 24 1 3.5062 0.4819 9.2215 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 4.2755 4.6343 1.4980 31 1 2.9687 5.5583 0.7190 32 1 2.6810 4.7533 2.2802 33 1 4.0830 1.1984 2.7795 34 1 2.9185 1.9486 5.2408 35 1 2.3305 0.3237 4.8144 36 1 4.8471 -0.5856 3.3133 37 1 5.6972 -1.2630 4.7232 38 1 3.9538 -1.5519 4.5119 39 1 5.3655 2.3546 5.5368 40 1 6.5217 1.0188 5.3219 41 1 5.6715 1.6957 3.9119 42 1 4.1112 0.9974 7.2194 43 1 3.5242 -0.6278 6.7923 44 1 6.9755 -1.6934 9.8024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:00 Heat of formation + Delta-G solvation = -4.691871 kcal Electronic energy + Delta-G solvation = -24128.895686 eV Core-core repulsion = 20662.798881 eV Total energy + Delta-G solvation = -3466.096805 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.05535 -39.69025 -37.30438 -35.49882 -33.94953 -33.58234 -32.13009 -31.52916 -28.48400 -27.83421 -26.62920 -26.61689 -24.94497 -23.87445 -22.31857 -20.67208 -19.99283 -18.67993 -17.96003 -17.57233 -16.90323 -16.45115 -15.78722 -15.28887 -14.75571 -14.52844 -14.21716 -13.89567 -13.81317 -13.60943 -13.50155 -13.39149 -13.01661 -12.79795 -12.78171 -12.37633 -12.30942 -11.83978 -11.74348 -11.30958 -11.19465 -11.07108 -11.05166 -10.66992 -10.56390 -10.36977 -10.09032 -10.03466 -9.79049 -9.58829 -9.53291 -9.04521 -8.96705 -8.57135 -6.07744 -4.05413 1.11031 1.72367 2.37369 2.65248 3.28523 3.29269 3.37117 3.40307 3.87790 4.03950 4.42263 4.66074 4.71075 4.87489 4.98887 5.05177 5.07598 5.13621 5.24400 5.28013 5.32364 5.44808 5.56278 5.56584 5.60032 5.67718 5.78912 5.96936 6.02674 6.03577 6.09275 6.23651 6.35840 6.53150 6.58336 6.82674 6.95668 6.99321 7.14333 7.30796 7.49390 7.74585 8.02270 8.14838 8.48800 8.96047 9.54758 11.04934 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.003484 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.806165 B = 8034.088585 C = 8331.589734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.059 3.941 4 N -0.356 5.356 5 O 0.094 5.906 6 C 0.017 3.983 7 C -0.080 4.080 8 C -0.248 4.248 9 C 0.593 3.407 10 O -0.530 6.530 11 N -0.707 5.707 12 C 0.124 3.876 13 C -0.063 4.063 14 C -0.130 4.130 15 C -0.129 4.129 16 C -0.001 4.001 17 C -0.512 4.512 18 H 0.078 0.922 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.874 3.126 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.402 0.598 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 8.133 -17.486 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.104 4.104 4 N -0.062 5.062 5 O 0.033 5.967 6 C -0.047 4.047 7 C -0.137 4.137 8 C -0.255 4.255 9 C 0.377 3.623 10 O -0.406 6.406 11 N -0.359 5.359 12 C 0.002 3.998 13 C -0.063 4.063 14 C -0.187 4.187 15 C -0.186 4.186 16 C -0.039 4.039 17 C -0.550 4.550 18 H 0.096 0.904 19 C -0.134 4.134 20 N -0.542 5.542 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.238 0.762 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.423 8.052 -18.191 21.603 hybrid contribution -0.326 -0.165 1.322 1.371 sum -8.749 7.887 -16.869 20.574 Atomic orbital electron populations 1.21731 0.93448 1.02624 1.02745 1.20012 0.96918 0.87412 1.04231 1.24765 1.00405 0.98674 0.86512 1.73592 1.16605 0.92618 1.23372 1.84528 1.62611 1.26946 1.22621 1.24623 0.98656 0.97698 0.83710 1.20491 1.03020 0.90734 0.99473 1.22007 1.12517 0.95434 0.95545 1.16884 0.83896 0.77799 0.83736 1.90824 1.28691 1.53314 1.67812 1.46169 1.15489 1.61989 1.12219 1.21738 0.99305 1.00186 0.78584 1.20702 0.92009 0.95064 0.98550 1.21791 1.03176 0.97061 0.96691 1.21777 0.99981 0.98445 0.98434 1.19589 0.98108 0.96525 0.89704 1.21065 0.98066 1.40166 0.95710 0.90397 1.24995 0.95456 0.94694 0.98230 1.69898 1.25099 1.42589 1.16620 0.86864 0.83255 0.79164 0.80518 1.20358 1.21483 1.18988 0.92432 0.91330 0.91788 0.89501 0.89247 0.88517 0.89126 0.88624 0.76219 0.91466 0.91490 0.95056 0.90762 0.93317 0.93308 0.90771 0.95054 0.96321 0.96777 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.90 37.16 0.37 -1.05 16 2 C -0.05 -0.48 6.54 -27.88 -0.18 -0.66 16 3 C 0.06 0.72 6.84 -79.77 -0.55 0.17 16 4 N -0.36 -4.50 12.01 34.78 0.42 -4.08 16 5 O 0.09 1.09 11.06 18.65 0.21 1.29 16 6 C 0.02 0.17 7.55 -34.63 -0.26 -0.09 16 7 C -0.08 -0.56 10.33 36.01 0.37 -0.19 16 8 C -0.25 -3.10 6.24 -102.89 -0.64 -3.74 16 9 C 0.59 8.48 7.60 -12.53 -0.10 8.38 16 10 O -0.53 -9.44 17.11 5.27 0.09 -9.35 16 11 N -0.71 -9.39 4.96 -61.39 -0.30 -9.70 16 12 C 0.12 1.94 4.56 -4.04 -0.02 1.92 16 13 C -0.06 -1.08 0.54 -154.51 -0.08 -1.17 16 14 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 15 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 16 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 17 C -0.51 -13.33 8.20 -34.44 -0.28 -13.61 16 18 H 0.08 2.15 5.92 -52.49 -0.31 1.84 16 19 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 20 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 21 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.40 4.69 6.15 -40.82 -0.25 4.44 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 37 H 0.07 1.39 6.61 -51.93 -0.34 1.05 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.38 6.62 -51.93 -0.34 1.03 16 41 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 42 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 43 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -31.29 360.08 -5.98 -37.27 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.97 Total: 0.76 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.96 Total: -12.02 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.89 Total: -39.74 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.30 Total: -8.06 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.29 -5.98 -37.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.578 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds