Wall clock time and date at job start Tue Mar 31 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47636 * 2 1 4 4 N 1.30006 * 127.33414 * 270.20222 * 3 2 1 5 5 O 1.20666 * 112.30293 * 180.29447 * 4 3 2 6 6 C 1.33491 * 113.15045 * 359.68452 * 5 4 3 7 7 C 1.50705 * 126.82500 * 180.02562 * 6 5 4 8 8 C 1.37353 * 106.34654 * 0.02562 * 6 5 4 9 9 C 1.47398 * 128.56714 * 180.02562 * 8 6 5 10 10 O 1.21610 * 120.00362 * 89.74613 * 9 8 6 11 11 N 1.34784 * 119.99800 * 270.01956 * 9 8 6 12 12 C 1.46499 * 119.99893 * 179.72628 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46870 * 299.99298 * 13 12 11 15 15 C 1.53000 * 109.47499 * 59.99732 * 13 12 11 16 16 C 1.53000 * 109.46990 * 180.02562 * 13 12 11 17 17 C 1.50698 * 109.47356 * 179.97438 * 16 13 12 18 18 H 1.07998 * 119.99756 * 359.97438 * 17 16 13 19 19 C 1.37878 * 120.00089 * 180.02562 * 17 16 13 20 20 N 1.31512 * 119.99687 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00010 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46755 * 90.00339 * 21 19 17 23 23 H 1.48502 * 109.46948 * 210.00095 * 21 19 17 24 24 H 1.48498 * 109.46866 * 330.00353 * 21 19 17 25 25 H 1.08999 * 109.47219 * 59.99607 * 1 2 3 26 26 H 1.09001 * 109.47627 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46898 * 300.00034 * 1 2 3 28 28 H 1.08995 * 109.47181 * 239.99381 * 2 1 3 29 29 H 1.09005 * 109.46824 * 120.00176 * 2 1 3 30 30 H 1.09004 * 109.47313 * 269.97808 * 7 6 5 31 31 H 1.09002 * 109.46871 * 29.98157 * 7 6 5 32 32 H 1.09000 * 109.46945 * 149.97522 * 7 6 5 33 33 H 0.97005 * 119.99846 * 359.72416 * 11 9 8 34 34 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 35 35 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 36 36 H 1.09007 * 109.46830 * 60.00773 * 14 13 12 37 37 H 1.09005 * 109.46980 * 180.02562 * 14 13 12 38 38 H 1.08994 * 109.47292 * 300.00516 * 14 13 12 39 39 H 1.08992 * 109.46855 * 59.99654 * 15 13 12 40 40 H 1.08995 * 109.47095 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.46768 * 299.99888 * 15 13 12 42 42 H 1.09005 * 109.47033 * 299.99952 * 16 13 12 43 43 H 1.08999 * 109.47677 * 59.99180 * 16 13 12 44 44 H 0.97003 * 120.00152 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2919 2.1653 -1.0337 5 8 2.6869 3.2617 -0.7208 6 6 2.7524 3.4385 0.6007 7 6 3.2004 4.6821 1.3246 8 6 2.3303 2.2617 1.1696 9 6 2.2103 1.9233 2.5992 10 8 1.1711 2.1439 3.1912 11 7 3.2541 1.3744 3.2517 12 6 3.1368 1.0435 4.6740 13 6 4.4529 0.4387 5.1671 14 6 4.7598 -0.8318 4.3716 15 6 5.5843 1.4496 4.9702 16 6 4.3302 0.0925 6.6524 17 6 5.6262 -0.5038 7.1379 18 1 6.4544 -0.6243 6.4553 19 6 5.7543 -0.8965 8.4534 20 7 6.8852 -1.4174 8.8769 21 14 4.3216 -0.6888 9.6339 22 1 3.4794 -1.9117 9.6102 23 1 4.8402 -0.4714 11.0083 24 1 3.5062 0.4819 9.2215 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 4.2755 4.6343 1.4980 31 1 2.9687 5.5583 0.7190 32 1 2.6810 4.7533 2.2802 33 1 4.0830 1.1984 2.7795 34 1 2.9185 1.9486 5.2408 35 1 2.3305 0.3237 4.8144 36 1 4.8471 -0.5856 3.3133 37 1 5.6972 -1.2630 4.7232 38 1 3.9538 -1.5519 4.5119 39 1 5.3655 2.3546 5.5368 40 1 6.5217 1.0188 5.3219 41 1 5.6715 1.6957 3.9119 42 1 4.1112 0.9974 7.2194 43 1 3.5242 -0.6278 6.7923 44 1 6.9755 -1.6934 9.8024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359761413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:00 Heat of formation + Delta-G solvation = -23.853180 kcal Electronic energy + Delta-G solvation = -24129.726583 eV Core-core repulsion = 20662.798881 eV Total energy + Delta-G solvation = -3466.927702 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.94496 -40.88972 -38.71389 -36.35272 -35.25396 -34.64329 -33.90977 -32.36952 -29.83868 -29.08947 -27.98373 -27.78967 -25.93217 -24.95954 -23.91904 -21.74919 -20.88885 -19.97191 -18.93229 -18.87472 -18.66807 -17.46565 -16.99267 -16.38792 -16.17794 -15.66455 -15.45005 -15.27446 -15.05020 -14.85427 -14.32998 -14.20611 -14.16166 -14.12998 -13.80843 -13.71724 -13.51116 -12.92781 -12.83634 -12.62519 -12.61585 -12.51402 -12.29150 -12.15735 -11.88562 -11.78195 -11.54223 -11.48310 -11.10588 -11.01450 -10.90204 -10.68964 -10.42689 -10.16598 -8.20812 -6.21012 0.26823 0.81749 1.28109 1.37676 1.40669 1.50078 1.77225 2.26325 2.40578 3.02375 3.15040 3.22143 3.72166 3.88122 3.93164 4.06186 4.09750 4.16104 4.22725 4.29677 4.37702 4.60383 4.63492 4.66987 4.71003 4.78009 4.83326 4.89132 4.94824 4.99921 5.02131 5.08394 5.10821 5.20414 5.28487 5.32459 5.42712 5.42949 5.56959 5.70017 5.77894 6.38527 6.42077 6.86314 7.05218 7.16131 7.41923 8.94808 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.003484 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.806165 B = 8034.088585 C = 8331.589734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.056 3.944 4 N -0.373 5.373 5 O 0.093 5.907 6 C 0.036 3.964 7 C -0.082 4.082 8 C -0.276 4.276 9 C 0.604 3.396 10 O -0.568 6.568 11 N -0.695 5.695 12 C 0.137 3.863 13 C -0.057 4.057 14 C -0.126 4.126 15 C -0.124 4.124 16 C -0.003 4.003 17 C -0.502 4.502 18 H 0.051 0.949 19 C 0.006 3.994 20 N -0.952 5.952 21 Si 0.933 3.067 22 H -0.273 1.273 23 H -0.290 1.290 24 H -0.249 1.249 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.412 0.588 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.018 0.982 43 H 0.014 0.986 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 9.306 -18.904 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.106 4.106 4 N -0.080 5.080 5 O 0.033 5.967 6 C -0.028 4.028 7 C -0.139 4.139 8 C -0.284 4.284 9 C 0.389 3.611 10 O -0.447 6.447 11 N -0.346 5.346 12 C 0.014 3.986 13 C -0.058 4.058 14 C -0.183 4.183 15 C -0.182 4.182 16 C -0.041 4.041 17 C -0.540 4.540 18 H 0.070 0.930 19 C -0.190 4.190 20 N -0.594 5.594 21 Si 0.759 3.241 22 H -0.198 1.198 23 H -0.217 1.217 24 H -0.173 1.173 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.036 0.964 43 H 0.032 0.968 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.457 9.238 -19.641 23.676 hybrid contribution 0.055 -0.501 1.680 1.754 sum -9.402 8.737 -17.962 22.076 Atomic orbital electron populations 1.21693 0.93227 1.03528 1.01637 1.20133 0.97060 0.86600 1.05041 1.25087 0.99900 0.99394 0.86265 1.73586 1.17587 0.93098 1.23777 1.84516 1.62501 1.26629 1.23022 1.25207 0.96346 0.97971 0.83251 1.20725 1.04122 0.89964 0.99071 1.21852 1.15175 0.96745 0.94578 1.16962 0.83123 0.76794 0.84191 1.90808 1.30140 1.54891 1.68845 1.45960 1.15876 1.61543 1.11226 1.21416 0.97672 0.99747 0.79806 1.20556 0.93499 0.95939 0.95796 1.21724 1.01515 0.96491 0.98564 1.21708 0.97924 0.97800 1.00743 1.19565 0.95629 0.95996 0.92917 1.21373 0.98972 1.38583 0.95048 0.93045 1.25828 0.97841 0.95023 1.00344 1.70043 1.27419 1.44893 1.17023 0.85909 0.80318 0.79761 0.78160 1.19823 1.21665 1.17253 0.92499 0.89459 0.93829 0.88018 0.89052 0.86349 0.86751 0.89187 0.74973 0.91718 0.92074 0.91637 0.93625 0.93439 0.93187 0.93690 0.91457 0.96402 0.96762 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.90 71.98 0.71 -1.85 16 2 C -0.05 -0.93 6.54 29.85 0.20 -0.73 16 3 C 0.06 1.27 6.84 45.16 0.31 1.58 16 4 N -0.37 -8.80 12.01 -44.78 -0.54 -9.34 16 5 O 0.09 1.94 11.06 76.99 0.85 2.80 16 6 C 0.04 0.67 7.55 25.48 0.19 0.86 16 7 C -0.08 -0.89 10.33 71.24 0.74 -0.15 16 8 C -0.28 -6.38 6.24 -18.75 -0.12 -6.50 16 9 C 0.60 16.16 7.60 86.65 0.66 16.82 16 10 O -0.57 -19.60 17.11 -4.06 -0.07 -19.67 16 11 N -0.69 -16.71 4.96 -466.39 -2.31 -19.02 16 12 C 0.14 4.00 4.56 86.38 0.39 4.39 16 13 C -0.06 -1.90 0.54 -52.18 -0.03 -1.93 16 14 C -0.13 -3.97 8.05 71.98 0.58 -3.39 16 15 C -0.12 -3.84 8.05 71.98 0.58 -3.26 16 16 C 0.00 -0.14 3.11 29.85 0.09 -0.04 16 17 C -0.50 -26.45 8.20 25.60 0.21 -26.24 16 18 H 0.05 2.93 5.92 -2.91 -0.02 2.92 16 19 C 0.01 0.33 5.47 84.66 0.46 0.79 16 20 N -0.95 -57.86 13.96 21.45 0.30 -57.56 16 21 Si 0.93 43.32 27.47 68.60 1.88 45.21 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 33 H 0.41 8.25 6.15 -92.70 -0.57 7.68 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.60 6.86 -2.38 -0.02 1.58 16 37 H 0.04 1.71 6.61 -2.38 -0.02 1.69 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 41 H 0.07 1.57 6.86 -2.39 -0.02 1.55 16 42 H 0.02 0.77 7.20 -2.38 -0.02 0.75 16 43 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 44 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -68.81 360.08 5.47 -63.34 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.37 Total: 13.90 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.98 Total: -19.66 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.55 Total: -85.92 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.78 Total: -16.88 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -68.81 5.47 -63.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.491 kcal (2) G-P(sol) polarization free energy of solvation -68.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds