Wall clock time and date at job start Tue Mar 31 2020 07:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46754 * 2 1 4 4 H 1.08996 * 109.46968 * 55.00238 * 3 2 1 5 5 C 1.53000 * 109.47134 * 294.99988 * 3 2 1 6 6 C 1.52995 * 109.46722 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47878 * 59.99890 * 6 5 3 8 8 C 1.53001 * 109.46919 * 300.00295 * 7 6 5 9 9 C 1.52994 * 109.47273 * 59.99564 * 8 7 6 10 10 H 1.08989 * 109.47455 * 60.00129 * 9 8 7 11 11 O 1.42899 * 109.46890 * 180.02562 * 9 8 7 12 12 C 1.42903 * 113.99851 * 269.99685 * 11 9 8 13 13 C 1.50696 * 109.47041 * 180.02562 * 12 11 9 14 14 O 1.21297 * 120.00472 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00300 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00451 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00183 * 336.70227 * 16 15 13 18 18 C 1.38950 * 119.99983 * 156.70534 * 16 15 13 19 19 N 1.31406 * 120.00333 * 349.72058 * 18 16 15 20 20 Si 1.86804 * 119.99947 * 169.72066 * 18 16 15 21 21 H 1.48500 * 109.47190 * 89.99727 * 20 18 16 22 22 H 1.48504 * 109.46938 * 210.00062 * 20 18 16 23 23 H 1.48498 * 109.46882 * 329.99524 * 20 18 16 24 24 C 1.46505 * 119.99549 * 359.97438 * 15 13 12 25 25 C 1.47206 * 109.47035 * 277.92824 * 24 15 13 26 26 N 6.26164 * 149.04329 * 177.77485 * 2 1 3 27 27 H 1.08997 * 109.47197 * 299.99672 * 1 2 3 28 28 H 1.09002 * 109.46852 * 60.00520 * 1 2 3 29 29 H 1.09000 * 109.46422 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47662 * 240.00175 * 2 1 3 31 31 H 1.08998 * 109.47537 * 119.99722 * 2 1 3 32 32 H 1.09000 * 109.47066 * 299.99635 * 5 3 2 33 33 H 1.08998 * 109.47417 * 60.00269 * 5 3 2 34 34 H 1.09002 * 109.46806 * 180.02562 * 6 5 3 35 35 H 1.09006 * 109.47271 * 299.99575 * 6 5 3 36 36 H 1.09006 * 109.46927 * 59.99475 * 7 6 5 37 37 H 1.08991 * 109.47717 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46651 * 299.99349 * 8 7 6 39 39 H 1.09001 * 109.47200 * 179.97438 * 8 7 6 40 40 H 1.08998 * 109.46788 * 60.00084 * 12 11 9 41 41 H 1.09002 * 109.47026 * 300.00136 * 12 11 9 42 42 H 0.97003 * 120.00812 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47381 * 157.92846 * 24 15 13 44 44 H 1.08997 * 109.47345 * 37.93178 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 2.1456 3.5689 -1.3075 7 6 3.6704 3.5704 -1.1820 8 6 4.0752 2.8863 0.1253 9 6 3.5648 1.4440 0.1255 10 1 3.9991 0.9048 -0.7163 11 8 3.9424 0.8053 1.3467 12 6 5.2115 0.1507 1.2921 13 6 5.5065 -0.4853 2.6260 14 8 4.7087 -0.3872 3.5345 15 7 6.6573 -1.1623 2.8102 16 6 6.9259 -1.7404 4.0239 17 1 6.4473 -1.3676 4.9174 18 6 7.8141 -2.8060 4.1045 19 7 8.2404 -3.3905 3.0075 20 14 8.4020 -3.4078 5.7724 21 1 7.4810 -4.4603 6.2717 22 1 9.7707 -3.9689 5.6418 23 1 8.4216 -2.2725 6.7294 24 6 7.6212 -1.2803 1.7132 25 6 7.2135 -2.3751 0.8175 26 7 6.8997 -3.2185 0.1251 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0699 1.5876 -2.1492 33 1 0.5488 2.1253 -1.3969 34 1 1.8568 4.0564 -2.2387 35 1 1.7113 4.1082 -0.4657 36 1 4.1048 3.0311 -2.0239 37 1 4.0341 4.5978 -1.1826 38 1 3.6409 3.4256 0.9671 39 1 5.1616 2.8869 0.2145 40 1 5.9867 0.8801 1.0575 41 1 5.1906 -0.6185 0.5199 42 1 8.8602 -4.1346 3.0637 43 1 8.6101 -1.4925 2.1196 44 1 7.6513 -0.3453 1.1538 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362131624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:13 Heat of formation + Delta-G solvation = -69.675628 kcal Electronic energy + Delta-G solvation = -24423.811565 eV Core-core repulsion = 20954.896853 eV Total energy + Delta-G solvation = -3468.914712 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.61828 -38.67293 -36.33194 -35.60695 -34.30879 -33.93161 -31.87820 -30.07336 -29.02035 -27.72697 -27.04380 -24.30147 -23.89126 -22.13040 -20.68127 -20.04650 -19.33077 -17.91354 -16.92821 -16.50274 -15.82255 -15.39402 -15.23942 -14.74366 -14.64587 -14.16207 -14.07510 -13.73371 -13.42284 -13.18106 -13.03607 -13.00682 -12.71249 -12.45334 -11.95004 -11.89455 -11.62315 -11.54527 -11.50099 -11.28205 -11.16465 -11.10947 -11.02750 -10.82626 -10.61144 -10.47520 -10.41061 -10.33594 -10.21798 -10.11972 -9.26472 -9.14545 -8.53852 -8.02157 -6.47676 -4.06897 3.11649 3.21054 3.25052 3.46558 3.66522 3.88941 3.95620 4.15314 4.57470 4.65814 4.78304 4.91125 4.94277 5.05478 5.13805 5.17975 5.26028 5.27935 5.35603 5.41910 5.45337 5.52892 5.57561 5.64194 5.69678 5.72444 5.80383 5.90139 5.95781 6.00023 6.06040 6.09250 6.11200 6.14915 6.28453 6.29427 6.44394 6.54686 6.57491 7.44066 7.45546 7.94156 8.29223 8.69971 8.99409 9.16670 9.71928 10.57849 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.003781 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.929533 B = 7403.725996 C = 7500.525261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.080 4.080 4 H 0.078 0.922 5 C -0.113 4.113 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.142 4.142 9 C 0.091 3.909 10 H 0.057 0.943 11 O -0.350 6.350 12 C 0.050 3.950 13 C 0.462 3.538 14 O -0.550 6.550 15 N -0.446 5.446 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.030 3.970 19 N -0.890 5.890 20 Si 0.934 3.066 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.268 1.268 24 C 0.220 3.780 25 C 0.246 3.754 26 N -0.475 5.475 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.273 0.727 43 H 0.136 0.864 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 12.415 -9.380 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.099 4.099 4 H 0.096 0.904 5 C -0.151 4.151 6 C -0.159 4.159 7 C -0.154 4.154 8 C -0.180 4.180 9 C 0.033 3.967 10 H 0.075 0.925 11 O -0.268 6.268 12 C -0.031 4.031 13 C 0.249 3.751 14 O -0.430 6.430 15 N -0.169 5.169 16 C -0.432 4.432 17 H 0.124 0.876 18 C -0.172 4.172 19 N -0.530 5.530 20 Si 0.760 3.240 21 H -0.204 1.204 22 H -0.208 1.208 23 H -0.193 1.193 24 C 0.092 3.908 25 C -0.072 4.072 26 N -0.155 5.155 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.154 0.846 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.714 11.073 -9.785 16.231 hybrid contribution 0.831 -0.313 0.700 1.131 sum -5.883 10.761 -9.085 15.262 Atomic orbital electron populations 1.21794 0.96152 1.01379 1.01395 1.21541 0.95515 0.96081 1.02820 1.21207 0.93667 0.96829 0.98178 0.90356 1.21627 1.00885 0.95421 0.97140 1.21571 0.95797 0.96891 1.01631 1.21493 0.95945 1.00429 0.97523 1.22054 1.01191 0.96498 0.98245 1.22135 0.95008 0.92272 0.87324 0.92495 1.88049 1.34932 1.70560 1.33233 1.22329 0.86781 0.96193 0.97757 1.19869 0.82069 0.84207 0.88923 1.90573 1.46230 1.62616 1.43564 1.43516 1.14496 1.47924 1.10956 1.19712 1.25380 1.12991 0.85112 0.87605 1.25343 0.97680 0.95024 0.99147 1.69728 1.33237 1.22830 1.27172 0.85801 0.77816 0.79083 0.81289 1.20376 1.20783 1.19254 1.18809 0.97221 0.89547 0.85208 1.29362 0.92364 0.94073 0.91379 1.80883 1.09573 1.10797 1.14281 0.92774 0.92987 0.92998 0.92530 0.90481 0.91991 0.91331 0.92130 0.91856 0.92043 0.91874 0.90988 0.91714 0.91668 0.91893 0.91602 0.84607 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.67 37.16 0.36 -1.30 16 2 C -0.12 -1.61 5.33 -26.73 -0.14 -1.75 16 3 C -0.08 -0.99 1.93 -90.61 -0.17 -1.16 16 4 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.11 -1.09 4.96 -26.73 -0.13 -1.22 16 6 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 7 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 8 C -0.14 -1.66 5.54 -26.73 -0.15 -1.81 16 9 C 0.09 1.25 2.04 -26.73 -0.05 1.19 16 10 H 0.06 0.75 7.79 -51.94 -0.40 0.34 16 11 O -0.35 -6.40 8.76 -55.14 -0.48 -6.88 16 12 C 0.05 0.91 4.85 36.00 0.17 1.08 16 13 C 0.46 10.83 7.62 -10.99 -0.08 10.75 16 14 O -0.55 -15.13 16.20 -14.36 -0.23 -15.37 16 15 N -0.45 -10.46 2.61 -117.93 -0.31 -10.77 16 16 C -0.30 -7.86 9.28 -14.93 -0.14 -7.99 16 17 H 0.11 2.87 7.42 -52.49 -0.39 2.48 16 18 C 0.03 0.75 5.10 -17.47 -0.09 0.66 16 19 N -0.89 -22.26 9.18 55.50 0.51 -21.75 16 20 Si 0.93 19.80 29.57 -169.99 -5.03 14.77 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 C 0.22 4.31 4.89 -6.82 -0.03 4.28 16 25 C 0.25 5.39 12.80 -20.78 -0.27 5.12 16 26 N -0.48 -11.18 18.53 42.13 0.78 -10.40 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.26 7.53 -51.93 -0.39 0.87 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.60 6.57 -51.93 -0.34 0.26 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 40 H 0.07 0.98 7.16 -51.93 -0.37 0.61 16 41 H 0.06 1.12 7.30 -51.93 -0.38 0.75 16 42 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 43 H 0.14 2.74 6.38 -51.93 -0.33 2.41 16 44 H 0.08 1.15 6.78 -51.93 -0.35 0.80 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -30.92 353.08 -7.56 -38.48 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.07 Total: 1.21 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.05 Total: 5.39 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.98 Total: -42.92 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.72 Total: -22.25 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.92 -7.56 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362131624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.197 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds