Wall clock time and date at job start Tue Mar 31 2020 07:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46754 * 2 1 4 4 H 1.08996 * 109.46968 * 55.00238 * 3 2 1 5 5 C 1.53000 * 109.47134 * 294.99988 * 3 2 1 6 6 C 1.52995 * 109.46722 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47878 * 59.99890 * 6 5 3 8 8 C 1.53001 * 109.46919 * 300.00295 * 7 6 5 9 9 C 1.52994 * 109.47273 * 59.99564 * 8 7 6 10 10 H 1.08989 * 109.47455 * 60.00129 * 9 8 7 11 11 O 1.42899 * 109.46890 * 180.02562 * 9 8 7 12 12 C 1.42903 * 113.99851 * 269.99685 * 11 9 8 13 13 C 1.50696 * 109.47041 * 180.02562 * 12 11 9 14 14 O 1.21297 * 120.00472 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00300 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00451 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00183 * 336.70227 * 16 15 13 18 18 C 1.38950 * 119.99983 * 156.70534 * 16 15 13 19 19 N 1.31406 * 120.00333 * 349.72058 * 18 16 15 20 20 Si 1.86804 * 119.99947 * 169.72066 * 18 16 15 21 21 H 1.48500 * 109.47190 * 89.99727 * 20 18 16 22 22 H 1.48504 * 109.46938 * 210.00062 * 20 18 16 23 23 H 1.48498 * 109.46882 * 329.99524 * 20 18 16 24 24 C 1.46505 * 119.99549 * 359.97438 * 15 13 12 25 25 C 1.47206 * 109.47035 * 277.92824 * 24 15 13 26 26 N 6.26164 * 149.04329 * 177.77485 * 2 1 3 27 27 H 1.08997 * 109.47197 * 299.99672 * 1 2 3 28 28 H 1.09002 * 109.46852 * 60.00520 * 1 2 3 29 29 H 1.09000 * 109.46422 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47662 * 240.00175 * 2 1 3 31 31 H 1.08998 * 109.47537 * 119.99722 * 2 1 3 32 32 H 1.09000 * 109.47066 * 299.99635 * 5 3 2 33 33 H 1.08998 * 109.47417 * 60.00269 * 5 3 2 34 34 H 1.09002 * 109.46806 * 180.02562 * 6 5 3 35 35 H 1.09006 * 109.47271 * 299.99575 * 6 5 3 36 36 H 1.09006 * 109.46927 * 59.99475 * 7 6 5 37 37 H 1.08991 * 109.47717 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46651 * 299.99349 * 8 7 6 39 39 H 1.09001 * 109.47200 * 179.97438 * 8 7 6 40 40 H 1.08998 * 109.46788 * 60.00084 * 12 11 9 41 41 H 1.09002 * 109.47026 * 300.00136 * 12 11 9 42 42 H 0.97003 * 120.00812 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47381 * 157.92846 * 24 15 13 44 44 H 1.08997 * 109.47345 * 37.93178 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 2.1456 3.5689 -1.3075 7 6 3.6704 3.5704 -1.1820 8 6 4.0752 2.8863 0.1253 9 6 3.5648 1.4440 0.1255 10 1 3.9991 0.9048 -0.7163 11 8 3.9424 0.8053 1.3467 12 6 5.2115 0.1507 1.2921 13 6 5.5065 -0.4853 2.6260 14 8 4.7087 -0.3872 3.5345 15 7 6.6573 -1.1623 2.8102 16 6 6.9259 -1.7404 4.0239 17 1 6.4473 -1.3676 4.9174 18 6 7.8141 -2.8060 4.1045 19 7 8.2404 -3.3905 3.0075 20 14 8.4020 -3.4078 5.7724 21 1 7.4810 -4.4603 6.2717 22 1 9.7707 -3.9689 5.6418 23 1 8.4216 -2.2725 6.7294 24 6 7.6212 -1.2803 1.7132 25 6 7.2135 -2.3751 0.8175 26 7 6.8997 -3.2185 0.1251 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0699 1.5876 -2.1492 33 1 0.5488 2.1253 -1.3969 34 1 1.8568 4.0564 -2.2387 35 1 1.7113 4.1082 -0.4657 36 1 4.1048 3.0311 -2.0239 37 1 4.0341 4.5978 -1.1826 38 1 3.6409 3.4256 0.9671 39 1 5.1616 2.8869 0.2145 40 1 5.9867 0.8801 1.0575 41 1 5.1906 -0.6185 0.5199 42 1 8.8602 -4.1346 3.0637 43 1 8.6101 -1.4925 2.1196 44 1 7.6513 -0.3453 1.1538 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362131624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:12 Heat of formation + Delta-G solvation = -86.291490 kcal Electronic energy + Delta-G solvation = -24424.532083 eV Core-core repulsion = 20954.896853 eV Total energy + Delta-G solvation = -3469.635230 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.93447 -40.15360 -37.78353 -37.21940 -36.16147 -34.83575 -33.78383 -31.05994 -30.04334 -29.32861 -28.57397 -26.08898 -24.78504 -23.07182 -21.63747 -21.31260 -20.68040 -19.76189 -18.43563 -18.16255 -17.29005 -16.83082 -16.57962 -16.15195 -15.76156 -15.65986 -15.18763 -14.98863 -14.77948 -14.64832 -14.20109 -14.18127 -13.96488 -13.71387 -13.51246 -13.43795 -13.20576 -12.97688 -12.91339 -12.56330 -12.41935 -12.34389 -12.20276 -12.07211 -12.03297 -11.90958 -11.64951 -11.38801 -11.23440 -11.15367 -11.03953 -10.42941 -10.27296 -9.92552 -8.38903 -6.04873 1.38601 1.46441 1.57418 1.75149 1.96004 2.22449 2.29852 2.53622 3.01714 3.30481 3.54408 3.68443 3.79217 3.93333 4.00636 4.10444 4.19229 4.26604 4.31399 4.33887 4.38046 4.50370 4.53293 4.60983 4.61701 4.75875 4.84647 4.92707 4.95720 5.00988 5.14781 5.16978 5.21802 5.27874 5.33549 5.37675 5.39827 5.44911 5.51011 5.58981 5.96950 6.26174 6.45800 6.96301 7.09311 7.29115 7.86785 8.63557 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.003781 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.929533 B = 7403.725996 C = 7500.525261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.079 4.079 4 H 0.064 0.936 5 C -0.107 4.107 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.139 4.139 9 C 0.083 3.917 10 H 0.066 0.934 11 O -0.382 6.382 12 C 0.063 3.937 13 C 0.450 3.550 14 O -0.604 6.604 15 N -0.454 5.454 16 C -0.334 4.334 17 H 0.081 0.919 18 C 0.005 3.995 19 N -0.900 5.900 20 Si 0.991 3.009 21 H -0.288 1.288 22 H -0.268 1.268 23 H -0.264 1.264 24 C 0.219 3.781 25 C 0.258 3.742 26 N -0.508 5.508 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.275 0.725 43 H 0.134 0.866 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 13.797 -11.257 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.097 4.097 4 H 0.082 0.918 5 C -0.144 4.144 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.177 4.177 9 C 0.026 3.974 10 H 0.084 0.916 11 O -0.301 6.301 12 C -0.017 4.017 13 C 0.239 3.761 14 O -0.488 6.488 15 N -0.175 5.175 16 C -0.462 4.462 17 H 0.099 0.901 18 C -0.196 4.196 19 N -0.539 5.539 20 Si 0.815 3.185 21 H -0.215 1.215 22 H -0.193 1.193 23 H -0.189 1.189 24 C 0.093 3.907 25 C -0.060 4.060 26 N -0.189 5.189 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.151 0.849 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.155 12.463 -11.702 18.170 hybrid contribution 0.636 -0.765 1.295 1.632 sum -5.519 11.698 -10.407 16.602 Atomic orbital electron populations 1.21768 0.94475 1.01718 1.02347 1.21505 0.97071 0.96503 1.00869 1.21229 0.92812 0.96203 0.99488 0.91791 1.21604 1.01733 0.95815 0.95272 1.21582 0.95394 0.96191 1.02596 1.21493 0.96358 1.01005 0.96090 1.22036 1.01260 0.95020 0.99411 1.22452 0.95934 0.93261 0.85795 0.91642 1.88029 1.34976 1.71096 1.35953 1.22168 0.88282 0.97086 0.94140 1.20808 0.81302 0.83693 0.90282 1.90529 1.47916 1.64547 1.45828 1.43692 1.15340 1.47299 1.11211 1.19639 1.26458 1.14354 0.85726 0.90149 1.25947 0.97059 0.94537 1.02085 1.69816 1.33027 1.22717 1.28343 0.84959 0.77542 0.78186 0.77825 1.21483 1.19284 1.18873 1.19163 0.95789 0.91363 0.84374 1.29773 0.91467 0.93834 0.90879 1.80886 1.10586 1.11781 1.15601 0.93154 0.90633 0.93027 0.92119 0.94711 0.91301 0.90125 0.90059 0.92171 0.91176 0.90447 0.92246 0.91354 0.87674 0.91384 0.91473 0.84862 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.67 71.98 0.70 -2.45 16 2 C -0.12 -3.24 5.33 30.60 0.16 -3.08 16 3 C -0.08 -1.89 1.93 -10.79 -0.02 -1.91 16 4 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 5 C -0.11 -1.78 4.96 30.59 0.15 -1.63 16 6 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 7 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 8 C -0.14 -3.00 5.54 30.59 0.17 -2.83 16 9 C 0.08 2.19 2.04 30.59 0.06 2.25 16 10 H 0.07 1.60 7.79 -2.39 -0.02 1.58 16 11 O -0.38 -14.06 8.76 -129.95 -1.14 -15.20 16 12 C 0.06 2.25 4.85 71.23 0.35 2.59 16 13 C 0.45 21.40 7.62 87.66 0.67 22.07 16 14 O -0.60 -34.73 16.20 15.95 0.26 -34.47 16 15 N -0.45 -21.33 2.61 -645.40 -1.68 -23.02 16 16 C -0.33 -17.56 9.28 84.04 0.78 -16.78 16 17 H 0.08 4.56 7.42 -2.91 -0.02 4.53 16 18 C 0.01 0.25 5.10 84.93 0.43 0.68 16 19 N -0.90 -44.47 9.18 21.66 0.20 -44.27 16 20 Si 0.99 40.53 29.57 68.60 2.03 42.56 16 21 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 C 0.22 8.26 4.89 84.57 0.41 8.68 16 25 C 0.26 10.99 12.80 89.45 1.14 12.14 16 26 N -0.51 -23.56 18.53 20.00 0.37 -23.19 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.27 6.57 -2.39 -0.02 1.25 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.03 1.20 7.53 -2.39 -0.02 1.18 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.17 6.57 -2.39 -0.02 1.15 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.07 1.40 7.87 -2.39 -0.02 1.38 16 40 H 0.11 2.85 7.16 -2.39 -0.02 2.84 16 41 H 0.07 2.35 7.30 -2.39 -0.02 2.33 16 42 H 0.28 13.15 8.31 -92.71 -0.77 12.38 16 43 H 0.13 5.17 6.38 -2.39 -0.02 5.16 16 44 H 0.14 3.52 6.78 -2.39 -0.02 3.50 16 Total: -1.00 -69.59 353.08 6.39 -63.21 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.98 Total: 17.74 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 5.37 Total: 16.64 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -1.11 Total: -90.48 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -0.88 Total: -49.67 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -69.59 6.39 -63.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362131624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.085 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds