Wall clock time and date at job start Tue Mar 31 2020 07:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47531 * 2 1 4 4 H 1.08999 * 109.47186 * 305.00225 * 3 2 1 5 5 C 1.53002 * 109.47236 * 65.00074 * 3 2 1 6 6 C 1.52997 * 109.47348 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46613 * 299.99547 * 6 5 3 8 8 C 1.53003 * 109.47386 * 60.00374 * 7 6 5 9 9 C 1.52998 * 109.46637 * 299.99659 * 8 7 6 10 10 H 1.09004 * 109.46905 * 179.97438 * 9 8 7 11 11 O 1.42895 * 109.47379 * 300.00018 * 9 8 7 12 12 C 1.42907 * 113.99803 * 269.99881 * 11 9 8 13 13 C 1.50698 * 109.46855 * 180.02562 * 12 11 9 14 14 O 1.21290 * 120.00431 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99717 * 179.72547 * 13 12 11 16 16 C 1.37099 * 120.00002 * 179.97438 * 15 13 12 17 17 H 1.08006 * 119.99536 * 17.76854 * 16 15 13 18 18 C 1.38945 * 120.00028 * 197.76015 * 16 15 13 19 19 N 1.31404 * 120.00102 * 21.44880 * 18 16 15 20 20 Si 1.86800 * 119.99910 * 201.44166 * 18 16 15 21 21 H 1.48503 * 109.46980 * 90.00456 * 20 18 16 22 22 H 1.48503 * 109.47377 * 210.00167 * 20 18 16 23 23 H 1.48501 * 109.47123 * 330.00474 * 20 18 16 24 24 C 1.46496 * 119.99799 * 0.02562 * 15 13 12 25 25 C 1.47189 * 109.47427 * 84.22349 * 24 15 13 26 26 N 7.83067 * 173.59185 * 28.87936 * 2 1 3 27 27 H 1.08993 * 109.47359 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47276 * 300.00463 * 1 2 3 29 29 H 1.09007 * 109.46805 * 59.99992 * 1 2 3 30 30 H 1.09000 * 109.47057 * 240.00020 * 2 1 3 31 31 H 1.08997 * 109.46822 * 119.99959 * 2 1 3 32 32 H 1.08998 * 109.47333 * 59.99654 * 5 3 2 33 33 H 1.09006 * 109.46430 * 299.99907 * 5 3 2 34 34 H 1.09004 * 109.47207 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.47620 * 59.99298 * 6 5 3 36 36 H 1.08999 * 109.47613 * 299.99893 * 7 6 5 37 37 H 1.09007 * 109.47246 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47557 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.46826 * 59.99675 * 8 7 6 40 40 H 1.08998 * 109.46616 * 60.00191 * 12 11 9 41 41 H 1.09004 * 109.47302 * 300.00076 * 12 11 9 42 42 H 0.97000 * 120.00058 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.46492 * 204.21926 * 24 15 13 44 44 H 1.09004 * 109.47169 * 324.21528 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 2.1449 3.5691 1.3071 7 6 3.6697 3.5713 1.1812 8 6 4.0745 2.8873 -0.1262 9 6 3.5649 1.4447 -0.1259 10 1 3.8529 0.9574 -1.0575 11 8 4.1350 0.7383 0.9777 12 6 5.3751 0.0946 0.6777 13 6 5.8822 -0.6161 1.9060 14 8 5.2448 -0.5751 2.9370 15 7 7.0417 -1.3015 1.8574 16 6 7.5034 -1.9476 2.9750 17 1 6.8313 -2.1566 3.7943 18 6 8.8358 -2.3338 3.0536 19 7 9.7365 -1.7436 2.3006 20 14 9.3467 -3.6920 4.2299 21 1 9.2657 -5.0031 3.5373 22 1 10.7415 -3.4565 4.6822 23 1 8.4392 -3.6962 5.4053 24 6 7.8092 -1.3551 0.6108 25 6 8.6576 -0.1570 0.5049 26 7 9.3118 0.7653 0.4221 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0699 1.5874 2.1492 33 1 0.5490 2.1252 1.3968 34 1 1.8570 4.0564 2.2387 35 1 1.7101 4.1080 0.4653 36 1 4.1047 3.0325 2.0230 37 1 4.0328 4.5991 1.1805 38 1 5.1608 2.8892 -0.2161 39 1 3.6396 3.4261 -0.9679 40 1 6.1045 0.8405 0.3619 41 1 5.2246 -0.6286 -0.1239 42 1 10.6667 -2.0129 2.3557 43 1 8.4370 -2.2462 0.6088 44 1 7.1242 -1.3914 -0.2364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362131630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:20 Heat of formation + Delta-G solvation = -67.035349 kcal Electronic energy + Delta-G solvation = -24691.546887 eV Core-core repulsion = 21222.746666 eV Total energy + Delta-G solvation = -3468.800221 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.65878 -38.63875 -36.10097 -35.51292 -34.31372 -33.84443 -31.90485 -30.07428 -28.96550 -27.76726 -27.08759 -24.29878 -23.81274 -22.27006 -20.63680 -19.61892 -19.30512 -17.95405 -16.65433 -16.37626 -16.05794 -15.43311 -15.26870 -14.72892 -14.46877 -14.18149 -13.99768 -13.81472 -13.29415 -13.15645 -13.01940 -12.74557 -12.56782 -12.35871 -12.08640 -11.83728 -11.66677 -11.58724 -11.44069 -11.29418 -11.17401 -11.15998 -10.93950 -10.62501 -10.59379 -10.40937 -10.37600 -10.34257 -10.16444 -9.80041 -9.27909 -9.11560 -8.52426 -8.06039 -6.51526 -4.00978 3.10007 3.21476 3.25564 3.47025 3.68961 3.91911 3.95340 4.16873 4.65710 4.77134 4.83736 4.87034 5.01875 5.15792 5.17077 5.21095 5.28362 5.39277 5.42517 5.52044 5.53947 5.57519 5.60373 5.71916 5.77013 5.81502 5.83291 5.92355 6.00392 6.04661 6.06683 6.20282 6.28948 6.31250 6.38537 6.45747 6.46764 6.51514 6.68454 7.44443 7.47421 7.91925 8.28497 8.69633 8.99533 9.17586 9.72607 10.54932 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020338 B = 0.004200 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.390989 B = 6664.870189 C = 7238.727413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.074 0.926 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.116 4.116 8 C -0.141 4.141 9 C 0.090 3.910 10 H 0.057 0.943 11 O -0.343 6.343 12 C 0.048 3.952 13 C 0.460 3.540 14 O -0.551 6.551 15 N -0.444 5.444 16 C -0.311 4.311 17 H 0.109 0.891 18 C 0.032 3.968 19 N -0.879 5.879 20 Si 0.928 3.072 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.269 1.269 24 C 0.220 3.780 25 C 0.244 3.756 26 N -0.471 5.471 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.273 0.727 43 H 0.129 0.871 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 3.232 -9.061 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.096 4.096 4 H 0.093 0.907 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.179 4.179 9 C 0.031 3.969 10 H 0.075 0.925 11 O -0.261 6.261 12 C -0.032 4.032 13 C 0.247 3.753 14 O -0.431 6.431 15 N -0.167 5.167 16 C -0.438 4.438 17 H 0.127 0.873 18 C -0.172 4.172 19 N -0.518 5.518 20 Si 0.755 3.245 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.193 1.193 24 C 0.092 3.908 25 C -0.074 4.074 26 N -0.151 5.151 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.147 0.853 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.154 4.585 -8.474 15.509 hybrid contribution 0.644 -0.889 0.207 1.117 sum -11.510 3.696 -8.267 14.645 Atomic orbital electron populations 1.21811 0.96274 1.01306 1.01453 1.21528 0.95271 0.96168 1.02803 1.21230 0.93114 0.96607 0.98620 0.90748 1.21570 0.99811 0.95452 0.98241 1.21500 0.95923 0.96874 1.00994 1.21427 0.95793 0.99690 0.98474 1.22016 1.01066 0.96347 0.98421 1.22134 0.93401 0.91671 0.89667 0.92535 1.88062 1.35417 1.68194 1.34395 1.22327 0.87386 0.96191 0.97277 1.19791 0.84139 0.82116 0.89219 1.90569 1.57879 1.62285 1.32347 1.43590 1.18208 1.45298 1.09615 1.19726 0.94324 1.32256 0.97489 0.87296 1.25269 0.94956 0.98509 0.98461 1.69853 1.02354 1.38297 1.41297 0.85878 0.77762 0.80596 0.80265 1.20131 1.21128 1.19303 1.18761 0.92055 0.92625 0.87377 1.29234 0.93085 0.93696 0.91406 1.80806 1.10563 1.13527 1.10163 0.93016 0.92530 0.93289 0.92498 0.90531 0.90414 0.92343 0.92330 0.92764 0.90647 0.92725 0.91901 0.91589 0.92036 0.91739 0.91620 0.85292 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 37.16 0.36 -1.11 16 2 C -0.12 -1.39 5.19 -26.73 -0.14 -1.53 16 3 C -0.08 -0.90 2.02 -90.62 -0.18 -1.08 16 4 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.11 -1.38 4.81 -26.73 -0.13 -1.51 16 6 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 7 C -0.12 -1.54 5.78 -26.73 -0.15 -1.69 16 8 C -0.14 -1.78 5.63 -26.73 -0.15 -1.93 16 9 C 0.09 1.19 2.35 -26.73 -0.06 1.13 16 10 H 0.06 0.67 7.79 -51.93 -0.40 0.27 16 11 O -0.34 -5.98 7.59 -55.14 -0.42 -6.40 16 12 C 0.05 0.86 4.83 36.00 0.17 1.04 16 13 C 0.46 10.59 7.64 -10.98 -0.08 10.50 16 14 O -0.55 -14.89 16.15 -14.36 -0.23 -15.13 16 15 N -0.44 -10.31 2.60 -117.94 -0.31 -10.62 16 16 C -0.31 -7.98 9.32 -14.93 -0.14 -8.12 16 17 H 0.11 2.97 7.39 -52.48 -0.39 2.58 16 18 C 0.03 0.77 4.86 -17.47 -0.08 0.69 16 19 N -0.88 -22.01 9.48 55.50 0.53 -21.49 16 20 Si 0.93 19.55 29.60 -169.99 -5.03 14.52 16 21 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C 0.22 4.26 4.91 -6.84 -0.03 4.22 16 25 C 0.24 5.31 12.95 -20.84 -0.27 5.04 16 26 N -0.47 -11.05 18.52 42.07 0.78 -10.27 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.09 7.84 -51.93 -0.41 0.68 16 32 H 0.08 1.18 7.68 -51.93 -0.40 0.78 16 33 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.22 7.68 -51.93 -0.40 0.83 16 37 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 38 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.07 7.26 -51.93 -0.38 0.70 16 41 H 0.06 0.94 7.34 -51.93 -0.38 0.56 16 42 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 43 H 0.13 2.55 6.47 -51.93 -0.34 2.22 16 44 H 0.08 1.18 6.67 -51.93 -0.35 0.83 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -30.62 351.72 -7.48 -38.10 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.04 Total: 1.83 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.05 Total: 4.15 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 1.00 Total: -42.38 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.65 Total: -21.53 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.62 -7.48 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362131630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.935 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds