Wall clock time and date at job start Tue Mar 31 2020 07:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47531 * 2 1 4 4 H 1.08999 * 109.47186 * 305.00225 * 3 2 1 5 5 C 1.53002 * 109.47236 * 65.00074 * 3 2 1 6 6 C 1.52997 * 109.47348 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46613 * 299.99547 * 6 5 3 8 8 C 1.53003 * 109.47386 * 60.00374 * 7 6 5 9 9 C 1.52998 * 109.46637 * 299.99659 * 8 7 6 10 10 H 1.09004 * 109.46905 * 179.97438 * 9 8 7 11 11 O 1.42895 * 109.47379 * 300.00018 * 9 8 7 12 12 C 1.42907 * 113.99803 * 269.99881 * 11 9 8 13 13 C 1.50698 * 109.46855 * 180.02562 * 12 11 9 14 14 O 1.21290 * 120.00431 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99717 * 179.72547 * 13 12 11 16 16 C 1.37099 * 120.00002 * 179.97438 * 15 13 12 17 17 H 1.08006 * 119.99536 * 17.76854 * 16 15 13 18 18 C 1.38945 * 120.00028 * 197.76015 * 16 15 13 19 19 N 1.31404 * 120.00102 * 21.44880 * 18 16 15 20 20 Si 1.86800 * 119.99910 * 201.44166 * 18 16 15 21 21 H 1.48503 * 109.46980 * 90.00456 * 20 18 16 22 22 H 1.48503 * 109.47377 * 210.00167 * 20 18 16 23 23 H 1.48501 * 109.47123 * 330.00474 * 20 18 16 24 24 C 1.46496 * 119.99799 * 0.02562 * 15 13 12 25 25 C 1.47189 * 109.47427 * 84.22349 * 24 15 13 26 26 N 7.83067 * 173.59185 * 28.87936 * 2 1 3 27 27 H 1.08993 * 109.47359 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47276 * 300.00463 * 1 2 3 29 29 H 1.09007 * 109.46805 * 59.99992 * 1 2 3 30 30 H 1.09000 * 109.47057 * 240.00020 * 2 1 3 31 31 H 1.08997 * 109.46822 * 119.99959 * 2 1 3 32 32 H 1.08998 * 109.47333 * 59.99654 * 5 3 2 33 33 H 1.09006 * 109.46430 * 299.99907 * 5 3 2 34 34 H 1.09004 * 109.47207 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.47620 * 59.99298 * 6 5 3 36 36 H 1.08999 * 109.47613 * 299.99893 * 7 6 5 37 37 H 1.09007 * 109.47246 * 179.97438 * 7 6 5 38 38 H 1.08999 * 109.47557 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.46826 * 59.99675 * 8 7 6 40 40 H 1.08998 * 109.46616 * 60.00191 * 12 11 9 41 41 H 1.09004 * 109.47302 * 300.00076 * 12 11 9 42 42 H 0.97000 * 120.00058 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.46492 * 204.21926 * 24 15 13 44 44 H 1.09004 * 109.47169 * 324.21528 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 2.1449 3.5691 1.3071 7 6 3.6697 3.5713 1.1812 8 6 4.0745 2.8873 -0.1262 9 6 3.5649 1.4447 -0.1259 10 1 3.8529 0.9574 -1.0575 11 8 4.1350 0.7383 0.9777 12 6 5.3751 0.0946 0.6777 13 6 5.8822 -0.6161 1.9060 14 8 5.2448 -0.5751 2.9370 15 7 7.0417 -1.3015 1.8574 16 6 7.5034 -1.9476 2.9750 17 1 6.8313 -2.1566 3.7943 18 6 8.8358 -2.3338 3.0536 19 7 9.7365 -1.7436 2.3006 20 14 9.3467 -3.6920 4.2299 21 1 9.2657 -5.0031 3.5373 22 1 10.7415 -3.4565 4.6822 23 1 8.4392 -3.6962 5.4053 24 6 7.8092 -1.3551 0.6108 25 6 8.6576 -0.1570 0.5049 26 7 9.3118 0.7653 0.4221 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0699 1.5874 2.1492 33 1 0.5490 2.1252 1.3968 34 1 1.8570 4.0564 2.2387 35 1 1.7101 4.1080 0.4653 36 1 4.1047 3.0325 2.0230 37 1 4.0328 4.5991 1.1805 38 1 5.1608 2.8892 -0.2161 39 1 3.6396 3.4261 -0.9679 40 1 6.1045 0.8405 0.3619 41 1 5.2246 -0.6286 -0.1239 42 1 10.6667 -2.0129 2.3557 43 1 8.4370 -2.2462 0.6088 44 1 7.1242 -1.3914 -0.2364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362131630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:19 Heat of formation + Delta-G solvation = -83.506201 kcal Electronic energy + Delta-G solvation = -24692.261117 eV Core-core repulsion = 21222.746666 eV Total energy + Delta-G solvation = -3469.514451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94949 -40.16148 -37.70829 -36.95621 -36.14473 -34.75792 -33.80122 -31.12548 -30.01449 -29.34086 -28.61843 -26.08337 -24.72748 -23.25454 -21.63641 -21.12871 -20.49249 -19.78311 -18.30251 -18.00820 -17.29806 -16.71818 -16.64709 -16.23094 -15.87196 -15.48679 -15.19715 -15.08988 -14.76885 -14.59080 -14.18251 -14.11795 -13.85632 -13.55934 -13.46875 -13.42049 -13.14391 -12.97989 -12.85830 -12.64175 -12.35372 -12.33978 -12.22724 -12.13525 -12.10794 -11.89073 -11.52187 -11.37269 -11.21831 -11.13642 -10.74780 -10.36950 -10.25979 -9.95030 -8.42220 -5.98363 1.39088 1.47736 1.57637 1.76680 1.99650 2.23430 2.32251 2.60201 2.97848 3.36895 3.55692 3.73731 3.82429 3.92336 3.99298 4.16674 4.23559 4.25982 4.32922 4.38904 4.51674 4.56041 4.60290 4.62198 4.67077 4.83274 4.87902 4.90015 4.94694 4.97965 5.08292 5.20834 5.29163 5.33945 5.36387 5.40157 5.47490 5.50482 5.58099 5.68783 5.96252 6.29445 6.48538 6.97412 7.10815 7.31643 7.90002 8.61737 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020338 B = 0.004200 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.390989 B = 6664.870189 C = 7238.727413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.074 4.074 4 H 0.106 0.894 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.118 4.118 8 C -0.139 4.139 9 C 0.080 3.920 10 H 0.080 0.920 11 O -0.371 6.371 12 C 0.061 3.939 13 C 0.448 3.552 14 O -0.605 6.605 15 N -0.453 5.453 16 C -0.341 4.341 17 H 0.080 0.920 18 C 0.008 3.992 19 N -0.892 5.892 20 Si 0.988 3.012 21 H -0.257 1.257 22 H -0.285 1.285 23 H -0.280 1.280 24 C 0.219 3.781 25 C 0.256 3.744 26 N -0.505 5.505 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.275 0.725 43 H 0.128 0.872 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 3.236 -11.744 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.092 4.092 4 H 0.124 0.876 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.176 4.176 9 C 0.022 3.978 10 H 0.098 0.902 11 O -0.290 6.290 12 C -0.019 4.019 13 C 0.238 3.762 14 O -0.489 6.489 15 N -0.175 5.175 16 C -0.468 4.468 17 H 0.097 0.903 18 C -0.195 4.195 19 N -0.531 5.531 20 Si 0.812 3.188 21 H -0.181 1.181 22 H -0.211 1.211 23 H -0.205 1.205 24 C 0.093 3.907 25 C -0.061 4.061 26 N -0.186 5.186 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.146 0.854 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.101 4.588 -11.198 17.835 hybrid contribution 0.932 -0.855 1.082 1.665 sum -12.169 3.733 -10.115 16.258 Atomic orbital electron populations 1.21781 0.94727 1.01768 1.02206 1.21487 0.96640 0.95970 1.01505 1.21287 0.92049 0.96799 0.99043 0.87617 1.21531 1.00557 0.95520 0.97313 1.21488 0.94539 0.96635 1.02174 1.21417 0.97056 0.99658 0.97465 1.22034 1.00443 0.96299 0.98873 1.22488 0.94283 0.91710 0.89290 0.90214 1.88071 1.35092 1.68833 1.36958 1.22173 0.87884 0.96731 0.95116 1.20781 0.83586 0.81451 0.90390 1.90528 1.59406 1.64102 1.34881 1.43757 1.18518 1.44931 1.10272 1.19591 0.94599 1.34276 0.98343 0.90254 1.25876 0.94333 0.99558 0.99690 1.69931 1.02480 1.38638 1.42019 0.85009 0.76692 0.78896 0.78194 1.18108 1.21131 1.20489 1.19139 0.92644 0.91404 0.87556 1.29675 0.92499 0.93613 0.90352 1.80808 1.11765 1.14696 1.11319 0.92823 0.92905 0.91304 0.91388 0.94207 0.94665 0.90656 0.92424 0.89967 0.95051 0.91763 0.93248 0.88406 0.91544 0.87598 0.91447 0.85441 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.67 71.98 0.70 -1.84 16 2 C -0.12 -2.56 5.19 30.59 0.16 -2.40 16 3 C -0.07 -1.53 2.02 -10.79 -0.02 -1.56 16 4 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 5 C -0.11 -2.64 4.81 30.59 0.15 -2.49 16 6 C -0.11 -2.39 5.92 30.59 0.18 -2.21 16 7 C -0.12 -3.08 5.78 30.59 0.18 -2.90 16 8 C -0.14 -3.22 5.63 30.59 0.17 -3.05 16 9 C 0.08 1.95 2.35 30.59 0.07 2.02 16 10 H 0.08 1.58 7.79 -2.38 -0.02 1.57 16 11 O -0.37 -12.98 7.59 -129.94 -0.99 -13.96 16 12 C 0.06 2.10 4.83 71.24 0.34 2.44 16 13 C 0.45 21.07 7.64 87.66 0.67 21.74 16 14 O -0.61 -34.52 16.15 15.97 0.26 -34.26 16 15 N -0.45 -21.17 2.60 -645.43 -1.68 -22.85 16 16 C -0.34 -17.94 9.32 84.04 0.78 -17.16 16 17 H 0.08 4.57 7.39 -2.91 -0.02 4.55 16 18 C 0.01 0.38 4.86 84.93 0.41 0.79 16 19 N -0.89 -44.34 9.48 21.66 0.21 -44.13 16 20 Si 0.99 40.16 29.60 68.60 2.03 42.20 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.29 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.22 8.16 4.91 84.57 0.42 8.57 16 25 C 0.26 10.90 12.95 89.46 1.16 12.05 16 26 N -0.51 -23.49 18.52 19.98 0.37 -23.12 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.93 6.56 -2.39 -0.02 0.92 16 29 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.15 7.84 -2.39 -0.02 1.13 16 32 H 0.03 1.12 7.68 -2.39 -0.02 1.11 16 33 H 0.07 1.50 6.57 -2.38 -0.02 1.48 16 34 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.03 1.07 7.68 -2.39 -0.02 1.05 16 37 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.05 1.27 7.87 -2.39 -0.02 1.25 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.23 7.26 -2.39 -0.02 2.22 16 41 H 0.11 2.73 7.34 -2.39 -0.02 2.72 16 42 H 0.28 13.18 8.31 -92.71 -0.77 12.41 16 43 H 0.13 4.85 6.47 -2.39 -0.02 4.84 16 44 H 0.14 3.53 6.67 -2.38 -0.02 3.52 16 Total: -1.00 -70.50 351.72 6.55 -63.95 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.98 Total: 18.17 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 5.37 Total: 14.01 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -1.10 Total: -90.10 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.73 Total: -48.23 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.20 kcal Total: -70.50 6.55 -63.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362131630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.555 kcal (2) G-P(sol) polarization free energy of solvation -70.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds