Wall clock time and date at job start Tue Mar 31 2020 07:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46878 * 2 1 4 4 H 1.08994 * 109.46979 * 304.99266 * 3 2 1 5 5 C 1.53000 * 109.47387 * 64.99974 * 3 2 1 6 6 C 1.53001 * 109.47109 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47296 * 300.00106 * 6 5 3 8 8 C 1.52997 * 109.47444 * 59.99716 * 7 6 5 9 9 C 1.53001 * 109.47105 * 300.00400 * 8 7 6 10 10 H 1.09005 * 109.47090 * 299.99351 * 9 8 7 11 11 O 1.42907 * 109.47176 * 179.97438 * 9 8 7 12 12 C 1.42895 * 113.99984 * 89.99471 * 11 9 8 13 13 C 1.50701 * 109.46997 * 180.02562 * 12 11 9 14 14 O 1.21289 * 120.00231 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00173 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99994 * 180.02562 * 15 13 12 17 17 H 1.07995 * 119.99947 * 20.21536 * 16 15 13 18 18 C 1.38949 * 119.99633 * 200.22030 * 16 15 13 19 19 N 1.31412 * 120.00493 * 21.42273 * 18 16 15 20 20 Si 1.86804 * 119.99766 * 201.42705 * 18 16 15 21 21 H 1.48495 * 109.46998 * 89.99788 * 20 18 16 22 22 H 1.48500 * 109.46864 * 210.00067 * 20 18 16 23 23 H 1.48504 * 109.47037 * 329.99842 * 20 18 16 24 24 C 1.46503 * 119.99863 * 0.02562 * 15 13 12 25 25 C 1.47194 * 109.47153 * 83.94906 * 24 15 13 26 26 N 6.32673 * 148.83354 * 182.95708 * 2 1 3 27 27 H 1.08996 * 109.47189 * 300.00408 * 1 2 3 28 28 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46842 * 59.99868 * 1 2 3 30 30 H 1.09006 * 109.46481 * 119.99764 * 2 1 3 31 31 H 1.08996 * 109.47189 * 239.99592 * 2 1 3 32 32 H 1.09003 * 109.47003 * 299.99729 * 5 3 2 33 33 H 1.09005 * 109.46929 * 59.99687 * 5 3 2 34 34 H 1.09003 * 109.46515 * 59.99779 * 6 5 3 35 35 H 1.08991 * 109.46794 * 179.97438 * 6 5 3 36 36 H 1.08998 * 109.47151 * 179.97438 * 7 6 5 37 37 H 1.09005 * 109.47180 * 300.00103 * 7 6 5 38 38 H 1.09003 * 109.47300 * 59.99756 * 8 7 6 39 39 H 1.08996 * 109.47588 * 179.97438 * 8 7 6 40 40 H 1.09002 * 109.47646 * 299.99873 * 12 11 9 41 41 H 1.09000 * 109.47110 * 60.00222 * 12 11 9 42 42 H 0.97000 * 120.00004 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.47052 * 203.95288 * 24 15 13 44 44 H 1.09002 * 109.46659 * 323.95001 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 2.1458 3.5689 1.3075 7 6 3.6705 3.5703 1.1821 8 6 4.0754 2.8862 -0.1252 9 6 3.5649 1.4438 -0.1254 10 1 3.9992 0.9046 0.7165 11 8 3.9425 0.8050 -1.3467 12 6 5.2115 0.1504 -1.2920 13 6 5.5071 -0.4846 -2.6263 14 8 4.7096 -0.3859 -3.5349 15 7 6.6575 -1.1622 -2.8102 16 6 6.9266 -1.7395 -4.0242 17 1 6.4117 -1.3985 -4.9102 18 6 7.8617 -2.7632 -4.1147 19 7 8.1755 -3.4629 -3.0474 20 14 8.6730 -3.1450 -5.7535 21 1 9.9113 -2.3374 -5.8927 22 1 9.0145 -4.5890 -5.8122 23 1 7.7380 -2.8121 -6.8581 24 6 7.6205 -1.2820 -1.7126 25 6 7.2363 -2.4059 -0.8432 26 7 6.9436 -3.2699 -0.1689 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 0.5489 2.1253 1.3969 33 1 2.0699 1.5875 2.1492 34 1 1.7114 4.1081 0.4656 35 1 1.8570 4.0563 2.2386 36 1 4.0342 4.5978 1.1818 37 1 4.1049 3.0310 2.0239 38 1 3.6411 3.4253 -0.9671 39 1 5.1616 2.8875 -0.2148 40 1 5.9869 0.8798 -1.0575 41 1 5.1906 -0.6186 -0.5199 42 1 8.8280 -4.1778 -3.1107 43 1 8.6154 -1.4613 -2.1201 44 1 7.6264 -0.3593 -1.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362131633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:23 Heat of formation + Delta-G solvation = -69.692076 kcal Electronic energy + Delta-G solvation = -24410.429553 eV Core-core repulsion = 20941.514128 eV Total energy + Delta-G solvation = -3468.915425 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.61907 -38.67257 -36.33735 -35.61307 -34.30470 -33.93298 -31.91337 -30.07618 -29.02269 -27.72487 -27.07206 -24.32153 -23.89236 -22.13209 -20.68218 -20.04521 -19.30995 -17.94802 -16.92367 -16.50472 -15.81433 -15.39641 -15.24791 -14.74518 -14.65279 -14.17920 -14.10629 -13.73253 -13.42738 -13.18411 -13.03738 -13.00805 -12.72044 -12.45261 -11.95160 -11.93225 -11.65069 -11.55515 -11.50211 -11.29447 -11.16249 -11.11066 -11.03510 -10.82905 -10.62579 -10.45986 -10.40149 -10.32724 -10.22144 -10.12111 -9.27051 -9.14745 -8.52598 -8.04092 -6.50987 -4.02112 3.10274 3.21483 3.25670 3.46020 3.67352 3.89104 3.95101 4.15808 4.57277 4.65646 4.77804 4.86482 4.94472 5.05271 5.12757 5.16818 5.25747 5.27785 5.35337 5.41623 5.45069 5.52033 5.55811 5.63781 5.69500 5.72207 5.79398 5.89861 5.95576 5.99817 6.04111 6.07065 6.10046 6.14799 6.28299 6.29260 6.42526 6.44375 6.54674 7.43741 7.47468 7.93012 8.28692 8.70387 8.99607 9.17418 9.72703 10.55592 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.003754 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.880271 B = 7457.121602 C = 7505.761545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.080 4.080 4 H 0.078 0.922 5 C -0.113 4.113 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.142 4.142 9 C 0.091 3.909 10 H 0.057 0.943 11 O -0.350 6.350 12 C 0.050 3.950 13 C 0.460 3.540 14 O -0.550 6.550 15 N -0.444 5.444 16 C -0.313 4.313 17 H 0.109 0.891 18 C 0.033 3.967 19 N -0.877 5.877 20 Si 0.928 3.072 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.268 1.268 24 C 0.220 3.780 25 C 0.244 3.756 26 N -0.469 5.469 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.273 0.727 43 H 0.126 0.874 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.704 12.675 9.664 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.099 4.099 4 H 0.096 0.904 5 C -0.151 4.151 6 C -0.159 4.159 7 C -0.154 4.154 8 C -0.180 4.180 9 C 0.033 3.967 10 H 0.075 0.925 11 O -0.268 6.268 12 C -0.030 4.030 13 C 0.248 3.752 14 O -0.430 6.430 15 N -0.167 5.167 16 C -0.440 4.440 17 H 0.126 0.874 18 C -0.171 4.171 19 N -0.516 5.516 20 Si 0.755 3.245 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.193 1.193 24 C 0.093 3.907 25 C -0.075 4.075 26 N -0.149 5.149 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.144 0.856 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.548 11.294 10.046 16.473 hybrid contribution 0.949 -0.206 -0.700 1.197 sum -5.599 11.089 9.346 15.545 Atomic orbital electron populations 1.21796 0.96154 1.01381 1.01395 1.21541 0.95515 0.96076 1.02821 1.21205 0.93667 0.96833 0.98178 0.90355 1.21630 1.00887 0.95418 0.97139 1.21569 0.95796 0.96895 1.01632 1.21493 0.95949 1.00425 0.97522 1.22053 1.01188 0.96506 0.98246 1.22139 0.95009 0.92265 0.87324 0.92496 1.88051 1.34925 1.70553 1.33227 1.22329 0.86777 0.96175 0.97759 1.19822 0.82050 0.84415 0.88961 1.90571 1.46171 1.62731 1.43532 1.43568 1.14599 1.47641 1.10880 1.19707 1.22759 1.16264 0.85230 0.87378 1.25293 0.98406 0.94318 0.99112 1.69840 1.32722 1.19387 1.29638 0.85882 0.79501 0.77387 0.81756 1.20128 1.21120 1.19280 1.18715 0.96798 0.89447 0.85781 1.29223 0.92686 0.94197 0.91380 1.80827 1.09214 1.10575 1.14331 0.92991 0.92994 0.92776 0.92531 0.90471 0.91332 0.91992 0.91855 0.92130 0.91878 0.92039 0.90993 0.91717 0.91718 0.91901 0.91621 0.85597 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.67 37.16 0.36 -1.30 16 2 C -0.12 -1.60 5.33 -26.73 -0.14 -1.75 16 3 C -0.08 -0.99 1.93 -90.62 -0.17 -1.16 16 4 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 5 C -0.11 -1.08 4.96 -26.73 -0.13 -1.22 16 6 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 7 C -0.12 -1.06 5.92 -26.74 -0.16 -1.22 16 8 C -0.14 -1.65 5.54 -26.73 -0.15 -1.80 16 9 C 0.09 1.24 2.04 -26.73 -0.05 1.18 16 10 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 11 O -0.35 -6.37 8.76 -55.14 -0.48 -6.85 16 12 C 0.05 0.90 4.83 36.01 0.17 1.08 16 13 C 0.46 10.76 7.64 -10.98 -0.08 10.67 16 14 O -0.55 -15.15 16.17 -14.36 -0.23 -15.39 16 15 N -0.44 -10.38 2.60 -117.93 -0.31 -10.69 16 16 C -0.31 -8.07 9.27 -14.93 -0.14 -8.21 16 17 H 0.11 2.96 7.43 -52.49 -0.39 2.57 16 18 C 0.03 0.80 4.84 -17.47 -0.08 0.72 16 19 N -0.88 -22.12 9.58 55.50 0.53 -21.59 16 20 Si 0.93 19.60 29.60 -169.99 -5.03 14.57 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 C 0.22 4.28 4.91 -6.83 -0.03 4.24 16 25 C 0.24 5.31 12.82 -20.82 -0.27 5.04 16 26 N -0.47 -11.05 18.53 42.09 0.78 -10.27 16 27 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.26 7.53 -51.93 -0.39 0.87 16 32 H 0.07 0.60 6.57 -51.93 -0.34 0.26 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.73 7.87 -51.93 -0.41 0.33 16 40 H 0.06 0.96 7.15 -51.93 -0.37 0.59 16 41 H 0.06 1.11 7.43 -51.93 -0.39 0.72 16 42 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 43 H 0.13 2.47 6.63 -51.93 -0.34 2.13 16 44 H 0.08 1.19 6.69 -51.93 -0.35 0.85 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -31.21 353.56 -7.54 -38.76 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.09 Total: 1.05 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.04 Total: 5.07 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 1.01 Total: -42.54 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.72 Total: -22.24 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.21 -7.54 -38.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362131633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.934 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds