Wall clock time and date at job start Tue Mar 31 2020 07:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46878 * 2 1 4 4 H 1.08994 * 109.46979 * 304.99266 * 3 2 1 5 5 C 1.53000 * 109.47387 * 64.99974 * 3 2 1 6 6 C 1.53001 * 109.47109 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47296 * 300.00106 * 6 5 3 8 8 C 1.52997 * 109.47444 * 59.99716 * 7 6 5 9 9 C 1.53001 * 109.47105 * 300.00400 * 8 7 6 10 10 H 1.09005 * 109.47090 * 299.99351 * 9 8 7 11 11 O 1.42907 * 109.47176 * 179.97438 * 9 8 7 12 12 C 1.42895 * 113.99984 * 89.99471 * 11 9 8 13 13 C 1.50701 * 109.46997 * 180.02562 * 12 11 9 14 14 O 1.21289 * 120.00231 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00173 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99994 * 180.02562 * 15 13 12 17 17 H 1.07995 * 119.99947 * 20.21536 * 16 15 13 18 18 C 1.38949 * 119.99633 * 200.22030 * 16 15 13 19 19 N 1.31412 * 120.00493 * 21.42273 * 18 16 15 20 20 Si 1.86804 * 119.99766 * 201.42705 * 18 16 15 21 21 H 1.48495 * 109.46998 * 89.99788 * 20 18 16 22 22 H 1.48500 * 109.46864 * 210.00067 * 20 18 16 23 23 H 1.48504 * 109.47037 * 329.99842 * 20 18 16 24 24 C 1.46503 * 119.99863 * 0.02562 * 15 13 12 25 25 C 1.47194 * 109.47153 * 83.94906 * 24 15 13 26 26 N 6.32673 * 148.83354 * 182.95708 * 2 1 3 27 27 H 1.08996 * 109.47189 * 300.00408 * 1 2 3 28 28 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46842 * 59.99868 * 1 2 3 30 30 H 1.09006 * 109.46481 * 119.99764 * 2 1 3 31 31 H 1.08996 * 109.47189 * 239.99592 * 2 1 3 32 32 H 1.09003 * 109.47003 * 299.99729 * 5 3 2 33 33 H 1.09005 * 109.46929 * 59.99687 * 5 3 2 34 34 H 1.09003 * 109.46515 * 59.99779 * 6 5 3 35 35 H 1.08991 * 109.46794 * 179.97438 * 6 5 3 36 36 H 1.08998 * 109.47151 * 179.97438 * 7 6 5 37 37 H 1.09005 * 109.47180 * 300.00103 * 7 6 5 38 38 H 1.09003 * 109.47300 * 59.99756 * 8 7 6 39 39 H 1.08996 * 109.47588 * 179.97438 * 8 7 6 40 40 H 1.09002 * 109.47646 * 299.99873 * 12 11 9 41 41 H 1.09000 * 109.47110 * 60.00222 * 12 11 9 42 42 H 0.97000 * 120.00004 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.47052 * 203.95288 * 24 15 13 44 44 H 1.09002 * 109.46659 * 323.95001 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 2.1458 3.5689 1.3075 7 6 3.6705 3.5703 1.1821 8 6 4.0754 2.8862 -0.1252 9 6 3.5649 1.4438 -0.1254 10 1 3.9992 0.9046 0.7165 11 8 3.9425 0.8050 -1.3467 12 6 5.2115 0.1504 -1.2920 13 6 5.5071 -0.4846 -2.6263 14 8 4.7096 -0.3859 -3.5349 15 7 6.6575 -1.1622 -2.8102 16 6 6.9266 -1.7395 -4.0242 17 1 6.4117 -1.3985 -4.9102 18 6 7.8617 -2.7632 -4.1147 19 7 8.1755 -3.4629 -3.0474 20 14 8.6730 -3.1450 -5.7535 21 1 9.9113 -2.3374 -5.8927 22 1 9.0145 -4.5890 -5.8122 23 1 7.7380 -2.8121 -6.8581 24 6 7.6205 -1.2820 -1.7126 25 6 7.2363 -2.4059 -0.8432 26 7 6.9436 -3.2699 -0.1689 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 0.5489 2.1253 1.3969 33 1 2.0699 1.5875 2.1492 34 1 1.7114 4.1081 0.4656 35 1 1.8570 4.0563 2.2386 36 1 4.0342 4.5978 1.1818 37 1 4.1049 3.0310 2.0239 38 1 3.6411 3.4253 -0.9671 39 1 5.1616 2.8875 -0.2148 40 1 5.9869 0.8798 -1.0575 41 1 5.1906 -0.6186 -0.5199 42 1 8.8280 -4.1778 -3.1107 43 1 8.6154 -1.4613 -2.1201 44 1 7.6264 -0.3593 -1.1323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362131633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:23 Heat of formation + Delta-G solvation = -86.685084 kcal Electronic energy + Delta-G solvation = -24411.166425 eV Core-core repulsion = 20941.514128 eV Total energy + Delta-G solvation = -3469.652297 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92686 -40.14794 -37.78585 -37.21431 -36.15441 -34.83309 -33.82100 -31.05688 -30.04074 -29.31814 -28.59339 -26.10507 -24.78196 -23.06718 -21.63105 -21.29440 -20.66874 -19.78823 -18.40894 -18.17029 -17.27632 -16.83126 -16.57857 -16.16697 -15.77691 -15.66872 -15.17836 -14.98609 -14.77418 -14.63878 -14.20550 -14.17786 -13.98370 -13.71927 -13.52469 -13.44131 -13.22820 -12.98097 -12.86967 -12.56054 -12.35816 -12.34094 -12.22374 -12.11333 -12.02997 -11.90704 -11.64657 -11.38534 -11.23154 -11.13849 -11.03639 -10.41308 -10.26581 -9.94450 -8.42669 -6.00616 1.38951 1.47793 1.57802 1.75497 1.98079 2.22960 2.31104 2.54873 2.97329 3.30991 3.53911 3.68546 3.79528 3.92736 4.01032 4.10374 4.19464 4.27096 4.31799 4.34252 4.38437 4.50341 4.53562 4.58798 4.61412 4.76147 4.84084 4.85016 4.92964 5.01281 5.15115 5.17243 5.22090 5.28129 5.33868 5.38015 5.40124 5.47055 5.51282 5.59272 5.95646 6.26209 6.45539 6.97704 7.09595 7.29889 7.88128 8.61448 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.003754 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.880271 B = 7457.121602 C = 7505.761545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.079 4.079 4 H 0.063 0.937 5 C -0.107 4.107 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.139 4.139 9 C 0.083 3.917 10 H 0.066 0.934 11 O -0.382 6.382 12 C 0.063 3.937 13 C 0.448 3.552 14 O -0.606 6.606 15 N -0.452 5.452 16 C -0.343 4.343 17 H 0.080 0.920 18 C 0.009 3.991 19 N -0.891 5.891 20 Si 0.988 3.012 21 H -0.256 1.256 22 H -0.286 1.286 23 H -0.279 1.279 24 C 0.219 3.781 25 C 0.255 3.745 26 N -0.504 5.504 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.275 0.725 43 H 0.127 0.873 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 14.163 11.573 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.097 4.097 4 H 0.082 0.918 5 C -0.144 4.144 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.177 4.177 9 C 0.026 3.974 10 H 0.084 0.916 11 O -0.301 6.301 12 C -0.017 4.017 13 C 0.237 3.763 14 O -0.490 6.490 15 N -0.173 5.173 16 C -0.470 4.470 17 H 0.098 0.902 18 C -0.194 4.194 19 N -0.529 5.529 20 Si 0.813 3.187 21 H -0.180 1.180 22 H -0.212 1.212 23 H -0.204 1.204 24 C 0.093 3.907 25 C -0.062 4.062 26 N -0.185 5.185 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.144 0.856 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.805 12.790 11.995 18.471 hybrid contribution 0.688 -0.699 -1.310 1.637 sum -5.116 12.091 10.685 16.927 Atomic orbital electron populations 1.21770 0.94505 1.01711 1.02336 1.21504 0.97049 0.96508 1.00881 1.21227 0.92852 0.96194 0.99470 0.91838 1.21606 1.01721 0.95813 0.95281 1.21580 0.95419 0.96193 1.02579 1.21492 0.96337 1.01000 0.96108 1.22036 1.01280 0.95027 0.99387 1.22455 0.95904 0.93258 0.85815 0.91569 1.88031 1.35004 1.71099 1.35959 1.22174 0.88280 0.97118 0.94104 1.20787 0.81268 0.83889 0.90331 1.90527 1.47907 1.64705 1.45846 1.43738 1.15455 1.46975 1.11160 1.19594 1.23912 1.17656 0.85828 0.90234 1.25915 0.97923 0.93511 1.02052 1.69919 1.32651 1.19363 1.30995 0.85000 0.78871 0.77131 0.77738 1.18041 1.21162 1.20405 1.19115 0.95505 0.91119 0.84981 1.29663 0.91729 0.94010 0.90828 1.80830 1.10292 1.11619 1.15713 0.90631 0.93030 0.93184 0.92076 0.94721 0.90155 0.91268 0.92203 0.90065 0.90466 0.91135 0.92298 0.91312 0.87629 0.91284 0.91451 0.85573 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.67 71.98 0.70 -2.45 16 2 C -0.12 -3.23 5.33 30.60 0.16 -3.07 16 3 C -0.08 -1.88 1.93 -10.79 -0.02 -1.90 16 4 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.11 -1.77 4.96 30.59 0.15 -1.62 16 6 C -0.12 -1.72 5.92 30.59 0.18 -1.54 16 7 C -0.11 -1.70 5.92 30.59 0.18 -1.52 16 8 C -0.14 -2.98 5.54 30.59 0.17 -2.81 16 9 C 0.08 2.17 2.04 30.59 0.06 2.24 16 10 H 0.07 1.60 7.79 -2.38 -0.02 1.58 16 11 O -0.38 -14.02 8.76 -129.94 -1.14 -15.16 16 12 C 0.06 2.23 4.83 71.24 0.34 2.57 16 13 C 0.45 21.27 7.64 87.66 0.67 21.94 16 14 O -0.61 -34.94 16.17 15.98 0.26 -34.68 16 15 N -0.45 -21.18 2.60 -645.42 -1.68 -22.85 16 16 C -0.34 -18.05 9.27 84.04 0.78 -17.27 16 17 H 0.08 4.57 7.43 -2.91 -0.02 4.55 16 18 C 0.01 0.42 4.84 84.93 0.41 0.83 16 19 N -0.89 -44.46 9.58 21.66 0.21 -44.26 16 20 Si 0.99 40.08 29.60 68.60 2.03 42.12 16 21 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 22 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 C 0.22 8.15 4.91 84.57 0.42 8.56 16 25 C 0.26 10.85 12.82 89.46 1.15 12.00 16 26 N -0.50 -23.41 18.53 19.98 0.37 -23.04 16 27 H 0.07 1.26 6.56 -2.39 -0.02 1.25 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.52 8.14 -2.38 -0.02 1.51 16 31 H 0.03 1.19 7.53 -2.39 -0.02 1.18 16 32 H 0.08 1.16 6.57 -2.39 -0.02 1.14 16 33 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.39 7.87 -2.39 -0.02 1.37 16 40 H 0.11 2.82 7.15 -2.39 -0.02 2.80 16 41 H 0.07 2.35 7.43 -2.39 -0.02 2.33 16 42 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 43 H 0.13 4.75 6.63 -2.39 -0.02 4.73 16 44 H 0.14 3.55 6.69 -2.39 -0.02 3.53 16 Total: -1.00 -70.66 353.56 6.38 -64.28 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.98 Total: 17.64 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 5.35 Total: 15.96 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -1.10 Total: -90.15 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.88 Total: -49.84 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.12 kcal Total: -70.66 6.38 -64.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362131633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.409 kcal (2) G-P(sol) polarization free energy of solvation -70.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds