Wall clock time and date at job start Tue Mar 31 2020 06:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.52997 * 109.47060 * 65.00157 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.53004 * 110.53818 * 184.99940 * 6 5 4 8 8 C 1.52997 * 117.49921 * 253.62411 * 7 6 5 9 9 C 1.53000 * 60.00187 * 252.51134 * 8 7 6 10 10 N 1.47315 * 110.59960 * 307.83083 * 6 5 4 11 11 C 1.34535 * 106.61747 * 118.52235 * 10 6 5 12 12 O 1.21542 * 123.76727 * 179.97438 * 11 10 6 13 13 N 1.33789 * 112.46002 * 0.02562 * 11 10 6 14 14 C 1.46495 * 124.17737 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47139 * 89.97896 * 14 13 11 16 16 H 1.08002 * 119.99641 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00443 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99570 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00227 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47275 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47420 * 120.00026 * 19 17 15 22 22 H 1.48513 * 109.47171 * 239.99882 * 19 17 15 23 23 C 1.35124 * 111.68710 * 0.08869 * 13 11 10 24 24 O 1.21235 * 127.33718 * 179.97438 * 23 13 11 25 25 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 26 26 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 27 27 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 29 29 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 31 31 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 32 32 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 33 33 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 36 36 H 1.09001 * 115.54559 * 39.33335 * 7 6 5 37 37 H 1.09001 * 117.49944 * 359.97438 * 8 7 6 38 38 H 1.09001 * 117.49978 * 145.01957 * 8 7 6 39 39 H 1.09001 * 117.49954 * 252.51480 * 9 8 7 40 40 H 1.09003 * 117.50415 * 107.48834 * 9 8 7 41 41 H 0.96997 * 126.68890 * 298.56275 * 10 6 5 42 42 H 1.08999 * 109.47261 * 209.97405 * 14 13 11 43 43 H 1.08993 * 109.47322 * 329.97538 * 14 13 11 44 44 H 0.97008 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 6 2.1447 -2.9165 2.4374 7 6 1.8616 -4.4172 2.3440 8 6 0.7397 -4.9803 3.2187 9 6 2.2005 -5.2773 3.5632 10 7 3.5850 -2.6716 2.6262 11 6 3.7166 -2.0415 3.8076 12 8 4.7841 -1.6914 4.2713 13 7 2.5411 -1.8443 4.4153 14 6 2.3864 -1.1821 5.7129 15 6 2.2054 0.2991 5.5026 16 1 2.2061 0.7065 4.5024 17 6 2.0401 1.1343 6.5870 18 7 2.0399 0.6382 7.8050 19 14 1.8166 2.9704 6.3263 20 1 1.8550 3.2724 4.8728 21 1 0.5080 3.3942 6.8859 22 1 2.9097 3.7047 7.0130 23 6 1.5137 -2.3322 3.6858 24 8 0.3348 -2.3068 3.9672 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1263 -0.6442 1.2952 33 1 1.6053 -0.2617 2.1370 34 1 0.5490 -2.2724 1.1421 35 1 2.0699 -2.6550 0.3003 36 1 2.0038 -4.8620 1.3591 37 1 0.2035 -4.2817 3.8610 38 1 0.1434 -5.7957 2.8092 39 1 2.5653 -6.2881 3.3803 40 1 2.6252 -4.7741 4.4318 41 1 4.2992 -2.9163 2.0172 42 1 1.5129 -1.5857 6.2249 43 1 3.2756 -1.3572 6.3185 44 1 1.9240 1.2259 8.5681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376714111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:38 Heat of formation + Delta-G solvation = -37.312109 kcal Electronic energy + Delta-G solvation = -25602.191118 eV Core-core repulsion = 22134.679793 eV Total energy + Delta-G solvation = -3467.511325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13306 -38.25400 -37.20594 -36.60353 -35.19873 -34.18773 -32.49285 -30.87833 -27.85738 -27.10688 -26.74815 -23.83064 -22.95257 -22.30935 -22.12205 -20.65760 -19.80518 -19.42650 -17.41195 -17.04155 -16.22911 -15.65256 -15.45516 -15.15839 -14.94170 -14.55397 -14.33906 -14.10463 -13.90632 -13.59363 -13.37239 -12.94060 -12.48004 -12.32777 -12.22457 -12.08501 -11.66742 -11.54807 -11.40491 -11.26962 -11.11800 -10.79379 -10.78111 -10.63961 -10.58399 -10.44212 -10.33710 -10.16967 -9.93505 -9.81940 -9.38689 -9.06125 -8.53541 -8.51744 -6.14312 -4.19061 2.22620 2.93668 3.27758 3.34325 3.38667 3.58473 3.78184 3.85208 4.19703 4.38932 4.58180 4.73656 4.91223 4.94327 4.97992 5.04856 5.16764 5.22000 5.31612 5.42688 5.57695 5.68367 5.70460 5.72882 5.76086 5.85527 5.89435 5.97289 6.01074 6.07169 6.13221 6.14627 6.26052 6.29955 6.43284 6.51828 6.63250 7.05488 7.20618 7.25022 7.79137 7.98017 8.02907 8.10780 8.75064 8.89329 9.45780 10.95242 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.007213 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.225576 B = 3880.732502 C = 5202.562889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.124 4.124 5 C -0.105 4.105 6 C 0.147 3.853 7 C -0.155 4.155 8 C -0.178 4.178 9 C -0.173 4.173 10 N -0.728 5.728 11 C 0.701 3.299 12 O -0.543 6.543 13 N -0.556 5.556 14 C 0.248 3.752 15 C -0.530 4.530 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.891 5.891 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.281 1.281 23 C 0.531 3.469 24 O -0.468 6.468 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.430 0.570 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -8.627 -16.044 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.162 4.162 5 C -0.144 4.144 6 C 0.056 3.944 7 C -0.174 4.174 8 C -0.215 4.215 9 C -0.211 4.211 10 N -0.392 5.392 11 C 0.402 3.598 12 O -0.417 6.417 13 N -0.300 5.300 14 C 0.131 3.869 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.207 1.207 23 C 0.317 3.683 24 O -0.339 6.339 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.272 0.728 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.582 -8.283 -15.279 17.451 hybrid contribution 0.295 0.895 -0.311 0.992 sum -1.287 -7.388 -15.589 17.299 Atomic orbital electron populations 1.21912 0.95262 1.01837 1.01772 1.21043 0.95924 0.96202 0.97708 1.21845 1.00964 0.96048 1.01768 1.21746 1.01642 0.93992 0.98785 1.21771 1.02405 0.95508 0.94695 1.20972 0.82205 0.94654 0.96538 1.22270 1.06622 0.91366 0.97155 1.23458 0.91587 1.03603 1.02863 1.22938 0.99094 1.00489 0.98532 1.45611 1.07525 1.63837 1.22264 1.15960 0.84547 0.78339 0.80905 1.90957 1.27260 1.55267 1.68182 1.46897 1.06569 1.53057 1.23469 1.19592 0.99373 0.92453 0.75525 1.21263 1.50953 0.91135 0.93521 0.92130 1.24889 0.94725 0.99349 0.94802 1.69935 1.49275 1.35703 0.97996 0.86372 0.77809 0.84444 0.78444 1.19651 1.20724 1.20698 1.20485 0.86170 0.77153 0.84460 1.90672 1.14404 1.55013 1.73860 0.92306 0.93089 0.92459 0.91519 0.92760 0.92973 0.92343 0.91348 0.91132 0.89367 0.90423 0.86334 0.86272 0.88321 0.88293 0.88963 0.72763 0.93130 0.92918 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.95 37.15 0.33 -1.38 16 2 C -0.09 -1.06 2.92 -90.62 -0.26 -1.32 16 3 C -0.15 -1.80 9.19 37.16 0.34 -1.46 16 4 C -0.12 -1.74 4.14 -26.73 -0.11 -1.85 16 5 C -0.11 -1.27 4.38 -26.74 -0.12 -1.39 16 6 C 0.15 2.09 0.95 -132.09 -0.13 1.97 16 7 C -0.15 -1.80 5.44 -90.62 -0.49 -2.29 16 8 C -0.18 -2.22 9.72 -26.73 -0.26 -2.48 16 9 C -0.17 -2.13 9.89 -26.73 -0.26 -2.40 16 10 N -0.73 -10.72 4.86 -52.93 -0.26 -10.98 16 11 C 0.70 14.39 8.51 -88.02 -0.75 13.64 16 12 O -0.54 -13.16 17.48 5.33 0.09 -13.06 16 13 N -0.56 -12.29 2.60 -121.93 -0.32 -12.60 16 14 C 0.25 6.58 5.46 -5.20 -0.03 6.56 16 15 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 16 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 17 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 18 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 19 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.53 10.29 4.63 -10.39 -0.05 10.24 16 24 O -0.47 -10.05 15.47 5.60 0.09 -9.96 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.99 7.47 -51.93 -0.39 0.60 16 33 H 0.07 1.26 7.35 -51.93 -0.38 0.88 16 34 H 0.09 1.07 6.57 -51.93 -0.34 0.73 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.12 1.87 5.21 -51.93 -0.27 1.60 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.38 7.95 -51.93 -0.41 0.97 16 41 H 0.43 4.96 8.96 -40.82 -0.37 4.60 16 42 H 0.05 1.41 8.01 -51.93 -0.42 0.99 16 43 H 0.05 1.50 7.86 -51.93 -0.41 1.09 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -32.38 357.06 -8.60 -40.98 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.10 Total: 4.74 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.21 Total: 4.18 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.16 Total: -49.15 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.18 Total: -23.03 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.38 -8.60 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376714111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.668 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds