Wall clock time and date at job start Tue Mar 31 2020 06:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 C 1.52997 * 109.47060 * 65.00157 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.53004 * 110.53818 * 184.99940 * 6 5 4 8 8 C 1.52997 * 117.49921 * 253.62411 * 7 6 5 9 9 C 1.53000 * 60.00187 * 252.51134 * 8 7 6 10 10 N 1.47315 * 110.59960 * 307.83083 * 6 5 4 11 11 C 1.34535 * 106.61747 * 118.52235 * 10 6 5 12 12 O 1.21542 * 123.76727 * 179.97438 * 11 10 6 13 13 N 1.33789 * 112.46002 * 0.02562 * 11 10 6 14 14 C 1.46495 * 124.17737 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47139 * 89.97896 * 14 13 11 16 16 H 1.08002 * 119.99641 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00443 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99570 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00227 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47275 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47420 * 120.00026 * 19 17 15 22 22 H 1.48513 * 109.47171 * 239.99882 * 19 17 15 23 23 C 1.35124 * 111.68710 * 0.08869 * 13 11 10 24 24 O 1.21235 * 127.33718 * 179.97438 * 23 13 11 25 25 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 26 26 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 27 27 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 29 29 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 31 31 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 32 32 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 33 33 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 36 36 H 1.09001 * 115.54559 * 39.33335 * 7 6 5 37 37 H 1.09001 * 117.49944 * 359.97438 * 8 7 6 38 38 H 1.09001 * 117.49978 * 145.01957 * 8 7 6 39 39 H 1.09001 * 117.49954 * 252.51480 * 9 8 7 40 40 H 1.09003 * 117.50415 * 107.48834 * 9 8 7 41 41 H 0.96997 * 126.68890 * 298.56275 * 10 6 5 42 42 H 1.08999 * 109.47261 * 209.97405 * 14 13 11 43 43 H 1.08993 * 109.47322 * 329.97538 * 14 13 11 44 44 H 0.97008 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 6 2.1447 -2.9165 2.4374 7 6 1.8616 -4.4172 2.3440 8 6 0.7397 -4.9803 3.2187 9 6 2.2005 -5.2773 3.5632 10 7 3.5850 -2.6716 2.6262 11 6 3.7166 -2.0415 3.8076 12 8 4.7841 -1.6914 4.2713 13 7 2.5411 -1.8443 4.4153 14 6 2.3864 -1.1821 5.7129 15 6 2.2054 0.2991 5.5026 16 1 2.2061 0.7065 4.5024 17 6 2.0401 1.1343 6.5870 18 7 2.0399 0.6382 7.8050 19 14 1.8166 2.9704 6.3263 20 1 1.8550 3.2724 4.8728 21 1 0.5080 3.3942 6.8859 22 1 2.9097 3.7047 7.0130 23 6 1.5137 -2.3322 3.6858 24 8 0.3348 -2.3068 3.9672 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1263 -0.6442 1.2952 33 1 1.6053 -0.2617 2.1370 34 1 0.5490 -2.2724 1.1421 35 1 2.0699 -2.6550 0.3003 36 1 2.0038 -4.8620 1.3591 37 1 0.2035 -4.2817 3.8610 38 1 0.1434 -5.7957 2.8092 39 1 2.5653 -6.2881 3.3803 40 1 2.6252 -4.7741 4.4318 41 1 4.2992 -2.9163 2.0172 42 1 1.5129 -1.5857 6.2249 43 1 3.2756 -1.3572 6.3185 44 1 1.9240 1.2259 8.5681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376714111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:38 Heat of formation + Delta-G solvation = -58.332153 kcal Electronic energy + Delta-G solvation = -25603.102615 eV Core-core repulsion = 22134.679793 eV Total energy + Delta-G solvation = -3468.422822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.64709 -39.82705 -38.56344 -37.60632 -36.86865 -35.84826 -34.46756 -32.07915 -29.90492 -28.06484 -27.95364 -25.80191 -24.50439 -23.36227 -23.14261 -22.19829 -20.88974 -20.78492 -19.09911 -18.83761 -17.88471 -17.28689 -16.81518 -16.77135 -16.26924 -16.03729 -15.69213 -15.56529 -15.18300 -14.91715 -14.64772 -14.47828 -14.06782 -13.74865 -13.54557 -13.31288 -13.16851 -13.07753 -12.76452 -12.66053 -12.55855 -12.37567 -12.33220 -11.95897 -11.88247 -11.71509 -11.53918 -11.43287 -11.35143 -11.14512 -10.97503 -10.74570 -10.57657 -10.30480 -8.36980 -6.51327 0.66642 1.30486 1.32814 1.38911 1.47637 2.09169 2.24361 2.32580 2.71915 2.95702 2.99715 3.38376 3.67437 3.92342 3.97720 4.00146 4.02329 4.18991 4.23768 4.39596 4.46046 4.59951 4.64182 4.75368 4.76960 4.77260 4.86156 4.92103 4.94689 4.99495 5.02996 5.07875 5.11649 5.14246 5.17283 5.25276 5.28369 5.46753 5.51827 5.55525 5.80298 5.91073 6.32696 6.47840 6.58534 7.14540 7.28041 8.73375 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.007213 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.225576 B = 3880.732502 C = 5202.562889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.124 4.124 5 C -0.099 4.099 6 C 0.159 3.841 7 C -0.139 4.139 8 C -0.183 4.183 9 C -0.179 4.179 10 N -0.694 5.694 11 C 0.698 3.302 12 O -0.589 6.589 13 N -0.573 5.573 14 C 0.265 3.735 15 C -0.549 4.549 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.922 5.922 19 Si 0.970 3.030 20 H -0.269 1.269 21 H -0.268 1.268 22 H -0.270 1.270 23 C 0.520 3.480 24 O -0.497 6.497 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.017 0.983 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.173 0.827 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.053 0.947 41 H 0.450 0.550 42 H 0.026 0.974 43 H 0.022 0.978 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 -9.762 -20.095 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C -0.209 4.209 4 C -0.162 4.162 5 C -0.137 4.137 6 C 0.069 3.931 7 C -0.157 4.157 8 C -0.221 4.221 9 C -0.216 4.216 10 N -0.359 5.359 11 C 0.399 3.601 12 O -0.467 6.467 13 N -0.316 5.316 14 C 0.145 3.855 15 C -0.587 4.587 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.794 3.206 20 H -0.193 1.193 21 H -0.194 1.194 22 H -0.195 1.195 23 C 0.309 3.691 24 O -0.370 6.370 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.112 0.888 35 H 0.150 0.850 36 H 0.190 0.810 37 H 0.097 0.903 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.298 0.702 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.751 -9.462 -19.394 21.650 hybrid contribution 0.299 1.220 1.009 1.611 sum -1.453 -8.242 -18.385 20.201 Atomic orbital electron populations 1.21916 0.95081 1.02515 1.01220 1.21056 0.96000 0.95675 0.97543 1.21876 1.00980 0.96678 1.01318 1.21725 1.00844 0.95624 0.97979 1.21892 1.03065 0.93861 0.94891 1.21174 0.80657 0.96917 0.94391 1.22492 1.05367 0.88629 0.99233 1.23424 0.91807 1.03970 1.02863 1.22971 0.98965 1.01996 0.97691 1.45374 1.08723 1.61730 1.20113 1.16059 0.83267 0.78588 0.82182 1.90914 1.28556 1.57470 1.69713 1.46813 1.08533 1.53571 1.22721 1.18958 0.96652 0.92217 0.77675 1.21461 1.51647 0.92235 0.93389 0.92969 1.25839 0.93979 1.04409 0.94395 1.70039 1.49497 1.37655 0.98852 0.85327 0.78472 0.78276 0.78574 1.19298 1.19352 1.19516 1.21479 0.85488 0.76375 0.85747 1.90647 1.15565 1.55897 1.74863 0.95350 0.91155 0.91190 0.87994 0.92768 0.90845 0.95350 0.92066 0.96378 0.88800 0.85026 0.80995 0.90271 0.84922 0.84988 0.92830 0.70220 0.95633 0.95963 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.95 71.98 0.64 -2.45 16 2 C -0.08 -1.75 2.92 -10.79 -0.03 -1.78 16 3 C -0.15 -3.48 9.19 71.98 0.66 -2.82 16 4 C -0.12 -3.32 4.14 30.59 0.13 -3.20 16 5 C -0.10 -2.03 4.38 30.59 0.13 -1.90 16 6 C 0.16 4.20 0.95 2.98 0.00 4.20 16 7 C -0.14 -2.67 5.44 -10.79 -0.06 -2.73 16 8 C -0.18 -4.18 9.72 30.59 0.30 -3.89 16 9 C -0.18 -4.03 9.89 30.60 0.30 -3.73 16 10 N -0.69 -19.47 4.86 -439.79 -2.14 -21.61 16 11 C 0.70 29.71 8.51 179.44 1.53 31.24 16 12 O -0.59 -29.93 17.48 -3.85 -0.07 -30.00 16 13 N -0.57 -26.96 2.60 -776.71 -2.02 -28.98 16 14 C 0.26 15.26 5.46 85.63 0.47 15.72 16 15 C -0.55 -33.22 9.39 25.60 0.24 -32.98 16 16 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 17 C 0.01 0.83 5.46 84.65 0.46 1.29 16 18 N -0.92 -56.69 13.29 21.45 0.28 -56.41 16 19 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 23 C 0.52 20.92 4.63 87.89 0.41 21.33 16 24 O -0.50 -22.54 15.47 -2.89 -0.04 -22.59 16 25 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.07 1.25 6.57 -2.39 -0.02 1.24 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.70 7.47 -2.39 -0.02 1.68 16 33 H 0.02 0.66 7.35 -2.39 -0.02 0.64 16 34 H 0.09 1.94 6.57 -2.39 -0.02 1.92 16 35 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.17 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 2.53 5.21 -2.39 -0.01 2.51 16 38 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.64 7.95 -2.39 -0.02 1.62 16 41 H 0.45 9.00 8.96 -92.71 -0.83 8.17 16 42 H 0.03 1.56 8.01 -2.39 -0.02 1.55 16 43 H 0.02 1.39 7.86 -2.39 -0.02 1.37 16 44 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -78.85 357.06 3.40 -75.45 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.17 Total: 17.59 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 5.18 Total: 18.31 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -3.87 Total: -106.99 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -0.11 Total: -52.59 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -78.85 3.40 -75.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376714111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.118 kcal (2) G-P(sol) polarization free energy of solvation -78.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds