Wall clock time and date at job start Tue Mar 31 2020 06:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99799 * 2 1 4 4 C 1.53001 * 109.46794 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46832 * 65.00248 * 4 3 2 6 6 C 1.36868 * 120.00014 * 272.16292 * 5 4 3 7 7 H 1.07998 * 119.99982 * 127.26675 * 6 5 4 8 8 C 1.39009 * 120.00067 * 307.25895 * 6 5 4 9 9 N 1.31399 * 119.99961 * 0.70030 * 8 6 5 10 10 Si 1.86797 * 120.00318 * 180.69894 * 8 6 5 11 11 H 1.48504 * 109.47179 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47410 * 120.00117 * 10 8 6 13 13 H 1.48498 * 109.47140 * 240.00321 * 10 8 6 14 14 C 1.34773 * 119.99587 * 92.16208 * 5 4 3 15 15 O 1.21739 * 120.00578 * 2.41977 * 14 5 4 16 16 C 1.46554 * 119.99774 * 182.42019 * 14 5 4 17 17 C 1.38002 * 126.24114 * 173.43795 * 16 14 5 18 18 C 1.39801 * 107.08162 * 180.02562 * 17 16 14 19 19 C 1.50700 * 126.05464 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47089 * 90.00702 * 19 18 17 21 21 C 1.52999 * 109.47311 * 184.99750 * 20 19 18 22 22 C 1.53005 * 109.46931 * 64.99672 * 20 19 18 23 23 C 1.35478 * 107.88322 * 0.26516 * 18 17 16 24 24 N 1.35596 * 108.88081 * 359.56950 * 23 18 17 25 25 H 0.96996 * 125.68093 * 180.17904 * 24 23 18 26 26 H 1.08996 * 109.47543 * 299.99840 * 1 2 3 27 27 H 1.09001 * 109.47428 * 59.99700 * 1 2 3 28 28 H 1.09006 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46843 * 60.00373 * 3 2 1 30 30 H 1.08994 * 109.46964 * 299.99900 * 3 2 1 31 31 H 1.08997 * 109.47453 * 305.00513 * 4 3 2 32 32 H 1.08996 * 109.46733 * 184.99822 * 4 3 2 33 33 H 0.97003 * 120.00290 * 179.97438 * 9 8 6 34 34 H 1.08001 * 126.45703 * 0.02562 * 17 16 14 35 35 H 1.08998 * 109.47425 * 330.00201 * 19 18 17 36 36 H 1.09006 * 109.46765 * 210.00095 * 19 18 17 37 37 H 1.08993 * 109.46788 * 304.99885 * 20 19 18 38 38 H 1.09004 * 109.46812 * 299.99672 * 21 20 19 39 39 H 1.09000 * 109.46883 * 180.02562 * 21 20 19 40 40 H 1.08991 * 109.47151 * 59.99493 * 21 20 19 41 41 H 1.09001 * 109.47203 * 299.99886 * 22 20 19 42 42 H 1.08993 * 109.47211 * 60.00472 * 22 20 19 43 43 H 1.09003 * 109.46854 * 180.02562 * 22 20 19 44 44 H 1.07996 * 125.56277 * 179.71174 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0551 -0.7989 -1.3485 7 1 3.5590 -1.3118 -2.1591 8 6 4.7736 -1.5231 -0.4041 9 7 5.3658 -0.9004 0.5899 10 14 4.8971 -3.3814 -0.5481 11 1 4.1472 -3.8360 -1.7465 12 1 6.3234 -3.7742 -0.6775 13 1 4.3184 -4.0115 0.6657 14 6 4.3051 1.3352 -2.3063 15 8 4.2776 2.5481 -2.2060 16 6 4.6954 0.7136 -3.5748 17 6 4.9323 1.3692 -4.7658 18 6 5.2753 0.3961 -5.7091 19 6 5.6193 0.6448 -7.1551 20 6 7.1262 0.8740 -7.2886 21 6 7.4589 1.2491 -8.7341 22 6 7.8724 -0.4068 -6.9094 23 6 5.2373 -0.8107 -5.0946 24 7 4.8919 -0.6310 -3.7957 25 1 4.7954 -1.3332 -3.1336 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5685 0.8426 32 1 3.9784 2.1765 0.0902 33 1 5.8669 -1.4056 1.2491 34 1 4.8653 2.4335 -4.9368 35 1 5.0849 1.5263 -7.5093 36 1 5.3292 -0.2202 -7.7515 37 1 7.4309 1.6824 -6.6241 38 1 7.1541 0.4406 -9.3986 39 1 8.5324 1.4120 -8.8293 40 1 6.9272 2.1614 -9.0043 41 1 7.6354 -0.6740 -5.8796 42 1 7.5676 -1.2151 -7.5739 43 1 8.9459 -0.2433 -7.0041 44 1 5.4498 -1.7606 -5.5622 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413854511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:57 Heat of formation + Delta-G solvation = -44.104586 kcal Electronic energy + Delta-G solvation = -24510.944505 eV Core-core repulsion = 21043.138637 eV Total energy + Delta-G solvation = -3467.805868 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50594 -38.26828 -36.89164 -36.00748 -34.81963 -31.77765 -30.89829 -29.47315 -28.36770 -26.95335 -26.07660 -25.47140 -24.97252 -22.60952 -20.62872 -20.11637 -19.22249 -18.64420 -18.07560 -16.03317 -15.64873 -15.46471 -15.16908 -14.81498 -14.46153 -14.37479 -14.17657 -14.00285 -13.51818 -13.30479 -12.84176 -12.68585 -12.46016 -12.17205 -12.03369 -12.00911 -11.68318 -11.49084 -11.33670 -11.17689 -11.11573 -11.02538 -10.80095 -10.64606 -10.54992 -10.49126 -10.32095 -10.16414 -9.20788 -9.01207 -8.69500 -7.95455 -7.54115 -7.20947 -6.47650 -4.40965 2.56550 3.00309 3.07109 3.09788 3.42253 3.91606 4.20592 4.47777 4.55502 4.74492 4.96955 5.12309 5.22691 5.23588 5.64757 5.66746 5.71227 5.74502 5.83163 5.88853 5.94562 5.97123 5.98663 6.03419 6.06437 6.12015 6.17474 6.25838 6.29877 6.33804 6.48902 6.56776 6.59713 6.68092 6.90373 7.03056 7.12913 7.33552 7.63698 7.81618 7.85694 7.99358 8.17854 8.46345 8.89527 9.41519 9.83113 10.51506 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.004890 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.977182 B = 5724.310726 C = 6646.766396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.053 3.947 4 C 0.114 3.886 5 N -0.433 5.433 6 C -0.341 4.341 7 H 0.083 0.917 8 C 0.057 3.943 9 N -0.852 5.852 10 Si 0.906 3.094 11 H -0.266 1.266 12 H -0.276 1.276 13 H -0.273 1.273 14 C 0.548 3.452 15 O -0.595 6.595 16 C 0.006 3.994 17 C -0.148 4.148 18 C -0.182 4.182 19 C -0.034 4.034 20 C -0.093 4.093 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.017 4.017 24 N -0.514 5.514 25 H 0.429 0.571 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.273 0.727 34 H 0.132 0.868 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.102 -1.720 -8.429 8.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.025 4.025 4 C -0.010 4.010 5 N -0.151 5.151 6 C -0.469 4.469 7 H 0.100 0.900 8 C -0.152 4.152 9 N -0.486 5.486 10 Si 0.731 3.269 11 H -0.190 1.190 12 H -0.202 1.202 13 H -0.198 1.198 14 C 0.338 3.662 15 O -0.481 6.481 16 C -0.111 4.111 17 C -0.175 4.175 18 C -0.189 4.189 19 C -0.072 4.072 20 C -0.111 4.111 21 C -0.203 4.203 22 C -0.203 4.203 23 C -0.155 4.155 24 N -0.118 5.118 25 H 0.280 0.720 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.920 -1.490 -7.952 8.143 hybrid contribution -0.279 -1.138 0.418 1.244 sum -1.199 -2.628 -7.534 8.069 Atomic orbital electron populations 1.22643 0.83553 1.01680 0.98813 1.88151 1.17227 1.27657 1.95014 1.23041 0.96577 0.84339 0.98499 1.21523 0.89150 0.99156 0.91164 1.43033 1.56723 1.05637 1.09676 1.19113 1.32205 0.81432 1.14164 0.89979 1.25625 0.94109 0.99960 0.95462 1.69721 1.30215 1.36473 1.12223 0.86209 0.78343 0.82949 0.79381 1.18974 1.20192 1.19839 1.17546 0.79229 0.86016 0.83443 1.90660 1.59272 1.13778 1.84340 1.20528 1.11592 0.83127 0.95808 1.20938 1.06875 0.98451 0.91203 1.19137 1.11295 0.92649 0.95798 1.19908 0.94438 1.00884 0.91994 1.21095 0.95652 0.98333 0.96046 1.21856 1.00818 1.00993 0.96675 1.21855 0.99081 0.97189 1.02208 1.21723 1.09251 0.98832 0.85651 1.43697 1.49431 1.08825 1.09810 0.72014 0.95175 0.95044 0.90485 0.94248 0.94367 0.87009 0.90874 0.91663 0.85033 0.91993 0.92301 0.91152 0.93055 0.93184 0.92938 0.91788 0.93312 0.93617 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.64 10.07 -35.23 -0.35 -8.00 16 3 C 0.05 1.10 6.28 37.16 0.23 1.33 16 4 C 0.11 2.69 5.49 -4.04 -0.02 2.67 16 5 N -0.43 -10.86 2.43 -116.34 -0.28 -11.14 16 6 C -0.34 -8.30 5.95 -15.02 -0.09 -8.39 16 7 H 0.08 1.96 6.08 -52.49 -0.32 1.65 16 8 C 0.06 1.38 5.33 -17.45 -0.09 1.29 16 9 N -0.85 -21.76 11.35 55.50 0.63 -21.13 16 10 Si 0.91 18.43 29.55 -169.99 -5.02 13.41 16 11 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 12 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 14 C 0.55 14.03 7.60 -12.91 -0.10 13.93 16 15 O -0.60 -16.27 16.42 5.15 0.08 -16.19 16 16 C 0.01 0.14 6.77 -81.98 -0.56 -0.42 16 17 C -0.15 -3.05 10.60 -39.08 -0.41 -3.46 16 18 C -0.18 -3.14 4.81 -105.02 -0.51 -3.64 16 19 C -0.03 -0.47 5.18 -27.88 -0.14 -0.61 16 20 C -0.09 -1.17 2.91 -90.62 -0.26 -1.43 16 21 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 22 C -0.15 -1.80 8.91 37.16 0.33 -1.47 16 23 C -0.02 -0.30 10.45 -16.87 -0.18 -0.47 16 24 N -0.51 -10.45 5.36 -9.37 -0.05 -10.50 16 25 H 0.43 8.81 5.14 -40.82 -0.21 8.60 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 2.82 5.85 -51.93 -0.30 2.51 16 32 H 0.07 1.75 7.32 -51.93 -0.38 1.36 16 33 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.13 2.65 8.06 -52.49 -0.42 2.22 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.90 6.43 -51.93 -0.33 0.57 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -28.74 358.09 -6.97 -35.71 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -7.02 Total: 12.69 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.34 Total: -0.25 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.30 Total: -42.77 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.27 Total: -24.19 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.74 -6.97 -35.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413854511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.394 kcal (2) G-P(sol) polarization free energy of solvation -28.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds