Wall clock time and date at job start Tue Mar 31 2020 06:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99799 * 2 1 4 4 C 1.53001 * 109.46794 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46832 * 65.00248 * 4 3 2 6 6 C 1.36868 * 120.00014 * 272.16292 * 5 4 3 7 7 H 1.07998 * 119.99982 * 127.26675 * 6 5 4 8 8 C 1.39009 * 120.00067 * 307.25895 * 6 5 4 9 9 N 1.31399 * 119.99961 * 0.70030 * 8 6 5 10 10 Si 1.86797 * 120.00318 * 180.69894 * 8 6 5 11 11 H 1.48504 * 109.47179 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47410 * 120.00117 * 10 8 6 13 13 H 1.48498 * 109.47140 * 240.00321 * 10 8 6 14 14 C 1.34773 * 119.99587 * 92.16208 * 5 4 3 15 15 O 1.21739 * 120.00578 * 2.41977 * 14 5 4 16 16 C 1.46554 * 119.99774 * 182.42019 * 14 5 4 17 17 C 1.38002 * 126.24114 * 173.43795 * 16 14 5 18 18 C 1.39801 * 107.08162 * 180.02562 * 17 16 14 19 19 C 1.50700 * 126.05464 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47089 * 90.00702 * 19 18 17 21 21 C 1.52999 * 109.47311 * 184.99750 * 20 19 18 22 22 C 1.53005 * 109.46931 * 64.99672 * 20 19 18 23 23 C 1.35478 * 107.88322 * 0.26516 * 18 17 16 24 24 N 1.35596 * 108.88081 * 359.56950 * 23 18 17 25 25 H 0.96996 * 125.68093 * 180.17904 * 24 23 18 26 26 H 1.08996 * 109.47543 * 299.99840 * 1 2 3 27 27 H 1.09001 * 109.47428 * 59.99700 * 1 2 3 28 28 H 1.09006 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46843 * 60.00373 * 3 2 1 30 30 H 1.08994 * 109.46964 * 299.99900 * 3 2 1 31 31 H 1.08997 * 109.47453 * 305.00513 * 4 3 2 32 32 H 1.08996 * 109.46733 * 184.99822 * 4 3 2 33 33 H 0.97003 * 120.00290 * 179.97438 * 9 8 6 34 34 H 1.08001 * 126.45703 * 0.02562 * 17 16 14 35 35 H 1.08998 * 109.47425 * 330.00201 * 19 18 17 36 36 H 1.09006 * 109.46765 * 210.00095 * 19 18 17 37 37 H 1.08993 * 109.46788 * 304.99885 * 20 19 18 38 38 H 1.09004 * 109.46812 * 299.99672 * 21 20 19 39 39 H 1.09000 * 109.46883 * 180.02562 * 21 20 19 40 40 H 1.08991 * 109.47151 * 59.99493 * 21 20 19 41 41 H 1.09001 * 109.47203 * 299.99886 * 22 20 19 42 42 H 1.08993 * 109.47211 * 60.00472 * 22 20 19 43 43 H 1.09003 * 109.46854 * 180.02562 * 22 20 19 44 44 H 1.07996 * 125.56277 * 179.71174 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0551 -0.7989 -1.3485 7 1 3.5590 -1.3118 -2.1591 8 6 4.7736 -1.5231 -0.4041 9 7 5.3658 -0.9004 0.5899 10 14 4.8971 -3.3814 -0.5481 11 1 4.1472 -3.8360 -1.7465 12 1 6.3234 -3.7742 -0.6775 13 1 4.3184 -4.0115 0.6657 14 6 4.3051 1.3352 -2.3063 15 8 4.2776 2.5481 -2.2060 16 6 4.6954 0.7136 -3.5748 17 6 4.9323 1.3692 -4.7658 18 6 5.2753 0.3961 -5.7091 19 6 5.6193 0.6448 -7.1551 20 6 7.1262 0.8740 -7.2886 21 6 7.4589 1.2491 -8.7341 22 6 7.8724 -0.4068 -6.9094 23 6 5.2373 -0.8107 -5.0946 24 7 4.8919 -0.6310 -3.7957 25 1 4.7954 -1.3332 -3.1336 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5685 0.8426 32 1 3.9784 2.1765 0.0902 33 1 5.8669 -1.4056 1.2491 34 1 4.8653 2.4335 -4.9368 35 1 5.0849 1.5263 -7.5093 36 1 5.3292 -0.2202 -7.7515 37 1 7.4309 1.6824 -6.6241 38 1 7.1541 0.4406 -9.3986 39 1 8.5324 1.4120 -8.8293 40 1 6.9272 2.1614 -9.0043 41 1 7.6354 -0.6740 -5.8796 42 1 7.5676 -1.2151 -7.5739 43 1 8.9459 -0.2433 -7.0041 44 1 5.4498 -1.7606 -5.5622 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413854511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:56 Heat of formation + Delta-G solvation = -60.403756 kcal Electronic energy + Delta-G solvation = -24511.651290 eV Core-core repulsion = 21043.138637 eV Total energy + Delta-G solvation = -3468.512654 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08411 -40.06504 -38.51245 -37.11322 -36.68327 -33.65867 -32.31274 -31.17532 -29.89239 -27.86858 -27.47953 -26.88385 -26.65616 -24.29155 -22.36345 -21.18802 -20.97938 -20.24274 -19.61430 -17.70865 -17.33588 -17.13102 -16.82272 -16.24148 -16.08363 -15.86639 -15.63094 -15.42239 -14.87910 -14.58097 -14.38248 -14.15434 -13.99672 -13.59299 -13.45778 -13.36792 -13.08778 -12.94391 -12.82671 -12.71054 -12.56464 -12.51928 -12.21664 -12.08052 -11.86689 -11.69170 -11.55604 -11.34077 -11.07571 -10.66907 -10.50543 -9.55981 -9.36990 -8.77867 -8.31950 -6.31954 0.85740 1.40152 1.42171 1.52450 1.98957 2.20921 2.60934 2.69563 2.92637 2.98657 3.20060 4.14208 4.17645 4.22550 4.27012 4.29648 4.44316 4.46416 4.49991 4.56968 4.58407 4.58827 4.76107 4.77200 4.84756 4.93114 4.94513 4.97409 5.13159 5.21000 5.22931 5.23543 5.32448 5.42517 5.45735 5.48352 5.63651 5.71094 6.02404 6.12757 6.25037 6.35508 6.40194 6.90853 7.01958 7.50571 7.93136 8.68228 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.004890 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.977182 B = 5724.310726 C = 6646.766396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.066 3.934 4 C 0.111 3.889 5 N -0.439 5.439 6 C -0.346 4.346 7 H 0.088 0.912 8 C 0.016 3.984 9 N -0.887 5.887 10 Si 0.971 3.029 11 H -0.246 1.246 12 H -0.273 1.273 13 H -0.277 1.277 14 C 0.530 3.470 15 O -0.632 6.632 16 C -0.041 4.041 17 C -0.151 4.151 18 C -0.178 4.178 19 C -0.031 4.031 20 C -0.092 4.092 21 C -0.141 4.141 22 C -0.145 4.145 23 C 0.003 3.997 24 N -0.519 5.519 25 H 0.427 0.573 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.274 0.726 34 H 0.125 0.875 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -4.034 -10.672 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.013 4.013 5 N -0.156 5.156 6 C -0.474 4.474 7 H 0.105 0.895 8 C -0.189 4.189 9 N -0.523 5.523 10 Si 0.793 3.207 11 H -0.169 1.169 12 H -0.199 1.199 13 H -0.203 1.203 14 C 0.322 3.678 15 O -0.520 6.520 16 C -0.156 4.156 17 C -0.179 4.179 18 C -0.184 4.184 19 C -0.069 4.069 20 C -0.111 4.111 21 C -0.198 4.198 22 C -0.202 4.202 23 C -0.135 4.135 24 N -0.121 5.121 25 H 0.277 0.723 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.184 -3.805 -10.203 10.954 hybrid contribution -0.212 -0.396 1.074 1.164 sum -1.396 -4.202 -9.129 10.146 Atomic orbital electron populations 1.22886 0.80771 1.03352 1.00153 1.88079 1.20296 1.27554 1.95274 1.22800 0.94399 0.84728 0.99279 1.21476 0.91520 0.97837 0.90450 1.43244 1.56395 1.06184 1.09780 1.19316 1.32441 0.81124 1.14506 0.89531 1.26426 0.93400 1.04315 0.94737 1.69850 1.31087 1.38270 1.13066 0.85220 0.78470 0.77268 0.79767 1.16902 1.19879 1.20255 1.18068 0.79146 0.85917 0.84691 1.90599 1.61110 1.15088 1.85199 1.20300 1.15291 0.84653 0.95357 1.21137 1.06308 0.98832 0.91574 1.19506 1.10109 0.91613 0.97194 1.19997 0.95177 1.02151 0.89575 1.21064 0.94894 0.97871 0.97265 1.21800 1.01347 1.01658 0.95005 1.21843 0.99541 0.97524 1.01299 1.22450 1.06307 1.00567 0.84131 1.43577 1.49882 1.07677 1.11001 0.72288 0.92976 0.94477 0.88705 0.91384 0.95443 0.88626 0.92368 0.91581 0.85732 0.91704 0.89810 0.93530 0.91578 0.92574 0.92666 0.93860 0.91333 0.93026 0.78760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.52 10.07 -148.98 -1.50 -18.02 16 3 C 0.07 2.77 6.28 71.98 0.45 3.22 16 4 C 0.11 5.49 5.49 86.38 0.47 5.97 16 5 N -0.44 -22.90 2.43 -640.19 -1.55 -24.45 16 6 C -0.35 -17.10 5.95 84.09 0.50 -16.60 16 7 H 0.09 4.14 6.08 -2.91 -0.02 4.12 16 8 C 0.02 0.80 5.33 84.94 0.45 1.25 16 9 N -0.89 -46.45 11.35 21.68 0.25 -46.20 16 10 Si 0.97 37.18 29.55 68.60 2.03 39.21 16 11 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 12 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 13 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 14 C 0.53 28.46 7.60 86.41 0.66 29.12 16 15 O -0.63 -36.59 16.42 -4.47 -0.07 -36.67 16 16 C -0.04 -1.90 6.77 40.34 0.27 -1.62 16 17 C -0.15 -6.29 10.60 22.59 0.24 -6.05 16 18 C -0.18 -5.84 4.81 -20.12 -0.10 -5.94 16 19 C -0.03 -0.76 5.18 29.85 0.15 -0.61 16 20 C -0.09 -2.11 2.91 -10.79 -0.03 -2.14 16 21 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 22 C -0.14 -3.15 8.91 71.98 0.64 -2.50 16 23 C 0.00 0.09 10.45 83.47 0.87 0.96 16 24 N -0.52 -20.74 5.36 -183.56 -0.98 -21.72 16 25 H 0.43 17.22 5.14 -92.71 -0.48 16.74 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 5.05 5.85 -2.39 -0.01 5.03 16 32 H 0.06 2.97 7.32 -2.39 -0.02 2.95 16 33 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.12 5.22 8.06 -2.91 -0.02 5.19 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.04 1.11 6.43 -2.39 -0.02 1.09 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.20 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -65.06 358.09 5.17 -59.89 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: 0.51 Total: 42.71 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 6.50 Total: 5.25 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -2.29 Total: -92.38 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -1.57 Total: -54.69 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -65.06 5.17 -59.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413854511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.511 kcal (2) G-P(sol) polarization free energy of solvation -65.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds