Wall clock time and date at job start Tue Mar 31 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00005 * 2 1 4 4 C 1.53000 * 109.47217 * 125.00029 * 3 2 1 5 5 C 1.53003 * 109.46867 * 180.02562 * 4 3 2 6 6 H 1.09005 * 110.65489 * 307.91697 * 5 4 3 7 7 N 1.47303 * 110.59784 * 70.82772 * 5 4 3 8 8 C 1.34536 * 106.61760 * 118.30815 * 7 5 4 9 9 O 1.21538 * 123.76930 * 180.20987 * 8 7 5 10 10 N 1.33787 * 112.45403 * 0.37455 * 8 7 5 11 11 C 1.46506 * 124.17572 * 179.86446 * 10 8 7 12 12 C 1.52997 * 109.47289 * 269.70723 * 11 10 8 13 13 C 1.53002 * 109.46817 * 299.99814 * 12 11 10 14 14 C 1.52997 * 109.47232 * 60.00053 * 12 11 10 15 15 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.47130 * 179.97438 * 15 12 11 17 17 H 1.07994 * 120.00100 * 0.02562 * 16 15 12 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99653 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47123 * 89.99910 * 20 18 16 22 22 H 1.48506 * 109.46940 * 210.00033 * 20 18 16 23 23 H 1.48501 * 109.47006 * 329.99902 * 20 18 16 24 24 C 1.34765 * 111.64759 * 359.60621 * 10 8 7 25 25 O 1.21237 * 127.15802 * 180.19504 * 24 10 8 26 26 H 1.07998 * 119.99478 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00321 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00321 * 180.02562 * 2 1 3 29 29 H 1.09009 * 109.46846 * 5.00216 * 3 2 1 30 30 H 1.09000 * 109.46942 * 245.00879 * 3 2 1 31 31 H 1.08994 * 109.46583 * 60.00461 * 4 3 2 32 32 H 1.08996 * 109.47400 * 300.00425 * 4 3 2 33 33 H 0.96999 * 126.69433 * 298.55955 * 7 5 4 34 34 H 1.09001 * 109.47060 * 29.70992 * 11 10 8 35 35 H 1.09004 * 109.47073 * 149.70481 * 11 10 8 36 36 H 1.09002 * 109.47070 * 60.00180 * 13 12 11 37 37 H 1.09000 * 109.46986 * 180.02562 * 13 12 11 38 38 H 1.08996 * 109.47407 * 299.99780 * 13 12 11 39 39 H 1.08998 * 109.47624 * 59.99682 * 14 12 11 40 40 H 1.09000 * 109.47140 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46777 * 299.99578 * 14 12 11 42 42 H 1.09001 * 109.46997 * 299.99574 * 15 12 11 43 43 H 1.09004 * 109.47298 * 59.99717 * 15 12 11 44 44 H 0.96997 * 120.00125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6585 1.1819 6 1 4.2512 2.8421 0.2070 7 7 2.9094 3.7701 1.5583 8 6 3.4103 4.2979 2.6899 9 8 2.9103 5.2380 3.2760 10 7 4.5221 3.6744 3.0961 11 6 5.2796 4.0406 4.2955 12 6 6.3456 5.0752 3.9293 13 6 7.2959 4.4815 2.8875 14 6 5.6703 6.3210 3.3526 15 6 7.1371 5.4571 5.1818 16 6 8.1875 6.4758 4.8210 17 1 8.2809 6.8169 3.8007 18 6 9.0286 6.9729 5.7940 19 7 9.9455 7.8614 5.4791 20 14 8.8665 6.3833 7.5590 21 1 9.7344 5.1962 7.7661 22 1 9.2829 7.4683 8.4836 23 1 7.4533 6.0167 7.8307 24 6 4.8562 2.6644 2.2688 25 8 5.8047 1.9164 2.3720 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4027 -0.9315 31 1 3.7400 0.5067 1.0919 32 1 2.4774 1.2356 2.1130 33 1 2.1148 4.0622 1.0848 34 1 4.6026 4.4634 5.0377 35 1 5.7607 3.1530 4.7064 36 1 6.7323 4.2091 1.9951 37 1 8.0556 5.2184 2.6270 38 1 7.7770 3.5940 3.2984 39 1 4.9933 6.7440 4.0947 40 1 6.4298 7.0580 3.0913 41 1 5.1069 6.0486 2.4601 42 1 6.4603 5.8799 5.9243 43 1 7.6182 4.5693 5.5923 44 1 10.5375 8.2109 6.1634 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419939755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:10 Heat of formation + Delta-G solvation = -40.762856 kcal Electronic energy + Delta-G solvation = -24537.781481 eV Core-core repulsion = 21070.120520 eV Total energy + Delta-G solvation = -3467.660960 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.48678 -38.51315 -37.60915 -36.53048 -35.59605 -33.90773 -32.16166 -31.20128 -28.03643 -27.38879 -26.48540 -26.40817 -23.42132 -22.88423 -21.80170 -20.73964 -19.97457 -18.24459 -17.84862 -17.18169 -16.83279 -16.26648 -15.81396 -15.55159 -15.31365 -14.52480 -14.32236 -14.22883 -14.01215 -13.88739 -13.67780 -13.26593 -12.84638 -12.61676 -12.37276 -12.26804 -12.00013 -11.47233 -11.45496 -11.11089 -11.01824 -10.99594 -10.93019 -10.75933 -10.51620 -10.13312 -9.94550 -9.84806 -9.74480 -9.65808 -9.56223 -9.24814 -8.85532 -8.49560 -5.99792 -3.96613 1.64136 1.87450 2.30250 3.06480 3.12040 3.33873 3.41561 3.44712 3.88099 4.18074 4.46684 4.48876 4.59814 4.79710 4.94125 4.97729 5.13556 5.25963 5.33656 5.43788 5.46023 5.54260 5.57087 5.63995 5.70671 5.74429 6.07780 6.14251 6.20730 6.28900 6.33202 6.41492 6.68603 6.70540 6.75490 6.94928 7.10915 7.13607 7.15851 7.22962 7.41312 7.45417 7.82078 8.18887 8.58245 9.04923 9.62462 11.13187 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.003425 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.765586 B = 8174.315482 C = 8350.624038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.092 4.092 4 C -0.114 4.114 5 C 0.092 3.908 6 H 0.125 0.875 7 N -0.730 5.730 8 C 0.702 3.298 9 O -0.535 6.535 10 N -0.566 5.566 11 C 0.122 3.878 12 C -0.066 4.066 13 C -0.122 4.122 14 C -0.120 4.120 15 C -0.001 4.001 16 C -0.508 4.508 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.876 3.124 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 C 0.523 3.477 25 O -0.462 6.462 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.436 0.564 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.715 -14.998 -11.642 25.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.173 4.173 3 C -0.130 4.130 4 C -0.153 4.153 5 C -0.017 4.017 6 H 0.143 0.857 7 N -0.396 5.396 8 C 0.402 3.598 9 O -0.408 6.408 10 N -0.311 5.311 11 C 0.002 3.998 12 C -0.067 4.067 13 C -0.180 4.180 14 C -0.177 4.177 15 C -0.039 4.039 16 C -0.546 4.546 17 H 0.096 0.904 18 C -0.135 4.135 19 N -0.544 5.544 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C 0.310 3.690 25 O -0.332 6.332 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.280 0.720 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.042 0.958 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.237 -14.764 -11.074 25.253 hybrid contribution -0.303 -0.121 0.717 0.788 sum -17.540 -14.886 -10.357 25.229 Atomic orbital electron populations 1.23888 0.95992 1.01965 1.01094 1.22917 0.96027 0.98389 0.99920 1.20758 0.98026 0.95902 0.98273 1.21758 0.98592 0.94864 1.00067 1.22135 0.90452 0.89318 0.99825 0.85707 1.45566 1.31106 1.35212 1.27678 1.15879 0.80335 0.82166 0.81376 1.91025 1.63326 1.27469 1.58956 1.46425 1.25769 1.31467 1.27430 1.22123 0.94015 1.00192 0.83451 1.20820 0.93634 0.93637 0.98566 1.21745 0.98990 1.00910 0.96326 1.21708 0.99645 0.97584 0.98774 1.19589 0.95395 0.96796 0.92094 1.21063 1.14311 1.22109 0.97079 0.90448 1.25004 0.95051 0.94771 0.98677 1.69902 1.20375 1.30285 1.33804 0.86845 0.78954 0.78468 0.85416 1.20392 1.21523 1.18999 1.20694 0.85455 0.79824 0.83062 1.90813 1.27984 1.41080 1.73288 0.88487 0.88547 0.87141 0.91273 0.90264 0.89027 0.90484 0.72037 0.88986 0.89209 0.95815 0.91095 0.93084 0.92960 0.91359 0.95592 0.96273 0.96805 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.07 14.32 29.01 0.42 -0.66 16 2 C -0.15 -0.87 9.52 -36.02 -0.34 -1.21 16 3 C -0.09 -0.47 5.59 -27.88 -0.16 -0.62 16 4 C -0.11 -0.76 4.94 -26.73 -0.13 -0.89 16 5 C 0.09 0.79 3.65 -68.21 -0.25 0.54 16 6 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 7 N -0.73 -6.81 6.06 -59.19 -0.36 -7.17 16 8 C 0.70 9.92 7.06 -88.02 -0.62 9.30 16 9 O -0.53 -9.42 16.36 5.33 0.09 -9.33 16 10 N -0.57 -8.31 2.12 -120.72 -0.26 -8.56 16 11 C 0.12 2.06 4.73 -4.04 -0.02 2.04 16 12 C -0.07 -1.30 0.60 -154.51 -0.09 -1.40 16 13 C -0.12 -2.40 7.23 37.16 0.27 -2.13 16 14 C -0.12 -2.41 7.11 37.16 0.26 -2.15 16 15 C 0.00 -0.02 3.11 -27.88 -0.09 -0.11 16 16 C -0.51 -14.04 8.20 -34.44 -0.28 -14.32 16 17 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 18 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 20 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 24 C 0.52 6.86 5.99 -10.56 -0.06 6.80 16 25 O -0.46 -7.20 16.86 5.59 0.09 -7.11 16 26 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 27 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 28 H 0.11 0.57 8.06 -52.49 -0.42 0.14 16 29 H 0.07 0.31 7.33 -51.92 -0.38 -0.07 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.44 2.92 8.61 -40.82 -0.35 2.57 16 34 H 0.09 1.54 7.85 -51.93 -0.41 1.14 16 35 H 0.09 1.45 8.00 -51.93 -0.42 1.03 16 36 H 0.02 0.41 6.19 -51.93 -0.32 0.09 16 37 H 0.07 1.53 6.62 -51.93 -0.34 1.19 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.08 8.11 -51.93 -0.42 0.66 16 40 H 0.07 1.50 6.62 -51.93 -0.34 1.16 16 41 H 0.03 0.47 6.20 -51.93 -0.32 0.15 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 43 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -33.13 350.32 -7.17 -40.30 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.92 Total: -0.46 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.19 Total: -3.01 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.16 Total: -42.75 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.18 Total: -16.44 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.13 -7.17 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419939755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.464 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds