Wall clock time and date at job start Tue Mar 31 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00005 * 2 1 4 4 C 1.53000 * 109.47217 * 125.00029 * 3 2 1 5 5 C 1.53003 * 109.46867 * 180.02562 * 4 3 2 6 6 H 1.09005 * 110.65489 * 307.91697 * 5 4 3 7 7 N 1.47303 * 110.59784 * 70.82772 * 5 4 3 8 8 C 1.34536 * 106.61760 * 118.30815 * 7 5 4 9 9 O 1.21538 * 123.76930 * 180.20987 * 8 7 5 10 10 N 1.33787 * 112.45403 * 0.37455 * 8 7 5 11 11 C 1.46506 * 124.17572 * 179.86446 * 10 8 7 12 12 C 1.52997 * 109.47289 * 269.70723 * 11 10 8 13 13 C 1.53002 * 109.46817 * 299.99814 * 12 11 10 14 14 C 1.52997 * 109.47232 * 60.00053 * 12 11 10 15 15 C 1.52996 * 109.47131 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.47130 * 179.97438 * 15 12 11 17 17 H 1.07994 * 120.00100 * 0.02562 * 16 15 12 18 18 C 1.37884 * 119.99709 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99653 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47123 * 89.99910 * 20 18 16 22 22 H 1.48506 * 109.46940 * 210.00033 * 20 18 16 23 23 H 1.48501 * 109.47006 * 329.99902 * 20 18 16 24 24 C 1.34765 * 111.64759 * 359.60621 * 10 8 7 25 25 O 1.21237 * 127.15802 * 180.19504 * 24 10 8 26 26 H 1.07998 * 119.99478 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00321 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.00321 * 180.02562 * 2 1 3 29 29 H 1.09009 * 109.46846 * 5.00216 * 3 2 1 30 30 H 1.09000 * 109.46942 * 245.00879 * 3 2 1 31 31 H 1.08994 * 109.46583 * 60.00461 * 4 3 2 32 32 H 1.08996 * 109.47400 * 300.00425 * 4 3 2 33 33 H 0.96999 * 126.69433 * 298.55955 * 7 5 4 34 34 H 1.09001 * 109.47060 * 29.70992 * 11 10 8 35 35 H 1.09004 * 109.47073 * 149.70481 * 11 10 8 36 36 H 1.09002 * 109.47070 * 60.00180 * 13 12 11 37 37 H 1.09000 * 109.46986 * 180.02562 * 13 12 11 38 38 H 1.08996 * 109.47407 * 299.99780 * 13 12 11 39 39 H 1.08998 * 109.47624 * 59.99682 * 14 12 11 40 40 H 1.09000 * 109.47140 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.46777 * 299.99578 * 14 12 11 42 42 H 1.09001 * 109.46997 * 299.99574 * 15 12 11 43 43 H 1.09004 * 109.47298 * 59.99717 * 15 12 11 44 44 H 0.96997 * 120.00125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6585 1.1819 6 1 4.2512 2.8421 0.2070 7 7 2.9094 3.7701 1.5583 8 6 3.4103 4.2979 2.6899 9 8 2.9103 5.2380 3.2760 10 7 4.5221 3.6744 3.0961 11 6 5.2796 4.0406 4.2955 12 6 6.3456 5.0752 3.9293 13 6 7.2959 4.4815 2.8875 14 6 5.6703 6.3210 3.3526 15 6 7.1371 5.4571 5.1818 16 6 8.1875 6.4758 4.8210 17 1 8.2809 6.8169 3.8007 18 6 9.0286 6.9729 5.7940 19 7 9.9455 7.8614 5.4791 20 14 8.8665 6.3833 7.5590 21 1 9.7344 5.1962 7.7661 22 1 9.2829 7.4683 8.4836 23 1 7.4533 6.0167 7.8307 24 6 4.8562 2.6644 2.2688 25 8 5.8047 1.9164 2.3720 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4027 -0.9315 31 1 3.7400 0.5067 1.0919 32 1 2.4774 1.2356 2.1130 33 1 2.1148 4.0622 1.0848 34 1 4.6026 4.4634 5.0377 35 1 5.7607 3.1530 4.7064 36 1 6.7323 4.2091 1.9951 37 1 8.0556 5.2184 2.6270 38 1 7.7770 3.5940 3.2984 39 1 4.9933 6.7440 4.0947 40 1 6.4298 7.0580 3.0913 41 1 5.1069 6.0486 2.4601 42 1 6.4603 5.8799 5.9243 43 1 7.6182 4.5693 5.5923 44 1 10.5375 8.2109 6.1634 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419939755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:10 Heat of formation + Delta-G solvation = -62.700312 kcal Electronic energy + Delta-G solvation = -24538.732760 eV Core-core repulsion = 21070.120520 eV Total energy + Delta-G solvation = -3468.612240 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.53794 -39.63038 -38.93460 -37.57303 -36.44413 -35.12725 -34.10661 -31.84891 -29.87384 -28.62487 -28.12996 -27.39064 -24.73371 -24.28409 -22.63244 -21.78179 -20.51075 -19.71396 -18.96557 -18.92174 -18.15195 -17.36738 -16.68011 -16.51953 -16.32630 -16.03117 -15.55828 -15.50150 -15.12645 -15.05035 -14.92014 -14.46751 -14.22288 -14.00656 -13.68446 -13.34158 -12.93766 -12.87789 -12.85710 -12.61794 -12.57253 -12.31688 -12.12926 -11.86544 -11.84989 -11.72465 -11.55011 -11.46137 -11.16192 -11.07387 -10.70785 -10.58663 -10.36659 -10.14109 -8.22378 -6.23547 0.63396 1.24301 1.37448 1.39359 1.47548 1.50240 2.01321 2.23143 2.39854 2.98073 3.12608 3.58138 3.79075 3.90955 3.96393 4.04145 4.16070 4.28353 4.39047 4.42852 4.47722 4.56071 4.61881 4.65854 4.71905 4.82100 4.87785 5.00069 5.02634 5.03869 5.16638 5.23405 5.27115 5.31753 5.34164 5.44847 5.60311 5.73011 5.83214 5.87750 5.94494 6.12915 6.36549 6.43381 6.82379 7.16825 7.38661 8.93739 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.003425 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.765586 B = 8174.315482 C = 8350.624038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.088 4.088 4 C -0.106 4.106 5 C 0.105 3.895 6 H 0.157 0.843 7 N -0.705 5.705 8 C 0.697 3.303 9 O -0.574 6.574 10 N -0.573 5.573 11 C 0.129 3.871 12 C -0.064 4.064 13 C -0.110 4.110 14 C -0.106 4.106 15 C 0.000 4.000 16 C -0.505 4.505 17 H 0.043 0.957 18 C 0.002 3.998 19 N -0.953 5.953 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.246 1.246 24 C 0.517 3.483 25 O -0.489 6.489 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.451 0.549 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.041 0.959 42 H 0.020 0.980 43 H 0.022 0.978 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.653 -17.050 -12.180 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.180 4.180 3 C -0.125 4.125 4 C -0.144 4.144 5 C -0.004 4.004 6 H 0.174 0.826 7 N -0.371 5.371 8 C 0.398 3.602 9 O -0.450 6.450 10 N -0.318 5.318 11 C 0.008 3.992 12 C -0.065 4.065 13 C -0.168 4.168 14 C -0.164 4.164 15 C -0.038 4.038 16 C -0.543 4.543 17 H 0.061 0.939 18 C -0.194 4.194 19 N -0.595 5.595 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.170 1.170 24 C 0.305 3.695 25 O -0.359 6.359 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.131 0.869 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.298 0.702 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.220 -16.855 -11.669 28.101 hybrid contribution 0.289 0.501 0.765 0.959 sum -18.931 -16.354 -10.904 27.290 Atomic orbital electron populations 1.24026 0.96220 1.02403 1.01034 1.23034 0.96153 0.98857 0.99966 1.20752 0.97824 0.95912 0.98038 1.21717 0.98643 0.93478 1.00581 1.22294 0.89055 0.89907 0.99101 0.82571 1.45463 1.31211 1.34534 1.25884 1.16018 0.80143 0.81850 0.82197 1.91006 1.64318 1.29299 1.60395 1.46430 1.25979 1.32183 1.27223 1.21799 0.93355 0.99450 0.84586 1.20717 0.94292 0.94508 0.96981 1.21593 0.98349 0.99735 0.97086 1.21542 0.98583 0.97030 0.99210 1.19533 0.94628 0.95722 0.93866 1.21333 1.14999 1.22405 0.95604 0.93883 1.25918 0.94833 0.95070 1.03549 1.70058 1.21839 1.32252 1.35364 0.85797 0.80037 0.78082 0.79589 1.19376 1.21511 1.16956 1.21424 0.85865 0.78732 0.83463 1.90805 1.29374 1.41761 1.74000 0.88207 0.88162 0.86894 0.90453 0.88803 0.88651 0.91240 0.70169 0.88908 0.88308 0.93852 0.94056 0.93233 0.93742 0.94264 0.93969 0.96123 0.95999 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 14.32 67.78 0.97 -0.81 16 2 C -0.16 -1.39 9.52 25.65 0.24 -1.14 16 3 C -0.09 -0.57 5.59 29.85 0.17 -0.40 16 4 C -0.11 -1.04 4.94 30.60 0.15 -0.89 16 5 C 0.10 1.42 3.65 44.37 0.16 1.58 16 6 H 0.16 1.33 8.14 -2.38 -0.02 1.31 16 7 N -0.70 -10.90 6.06 -459.61 -2.79 -13.69 16 8 C 0.70 18.26 7.06 179.44 1.27 19.53 16 9 O -0.57 -19.48 16.36 -3.83 -0.06 -19.55 16 10 N -0.57 -15.73 2.12 -773.11 -1.64 -17.37 16 11 C 0.13 4.18 4.73 86.38 0.41 4.59 16 12 C -0.06 -2.52 0.60 -52.18 -0.03 -2.55 16 13 C -0.11 -4.30 7.23 71.98 0.52 -3.78 16 14 C -0.11 -4.31 7.11 71.98 0.51 -3.80 16 15 C 0.00 0.02 3.11 29.85 0.09 0.11 16 16 C -0.51 -28.65 8.20 25.60 0.21 -28.44 16 17 H 0.04 2.68 5.92 -2.91 -0.02 2.66 16 18 C 0.00 0.13 5.47 84.66 0.46 0.59 16 19 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 20 Si 0.94 44.78 27.47 68.60 1.88 46.66 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 24 C 0.52 12.27 5.99 87.94 0.53 12.79 16 25 O -0.49 -14.21 16.86 -2.90 -0.05 -14.26 16 26 H 0.10 0.79 8.06 -2.91 -0.02 0.77 16 27 H 0.10 0.79 7.84 -2.91 -0.02 0.76 16 28 H 0.11 0.89 8.06 -2.91 -0.02 0.86 16 29 H 0.08 0.39 7.33 -2.38 -0.02 0.38 16 30 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.45 4.42 8.61 -92.71 -0.80 3.62 16 34 H 0.09 2.99 7.85 -2.39 -0.02 2.98 16 35 H 0.10 3.01 8.00 -2.38 -0.02 2.99 16 36 H 0.04 1.48 6.19 -2.39 -0.01 1.47 16 37 H 0.04 1.83 6.62 -2.39 -0.02 1.82 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.04 1.84 8.11 -2.39 -0.02 1.82 16 40 H 0.04 1.78 6.62 -2.39 -0.02 1.77 16 41 H 0.04 1.53 6.20 -2.39 -0.01 1.52 16 42 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 43 H 0.02 0.98 7.57 -2.38 -0.02 0.97 16 44 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -73.58 350.32 3.45 -70.13 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.14 Total: 10.75 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 5.66 Total: -2.62 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -4.13 Total: -91.12 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.11 Total: -33.81 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -73.58 3.45 -70.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419939755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.432 kcal (2) G-P(sol) polarization free energy of solvation -73.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds