Wall clock time and date at job start Tue Mar 31 2020 07:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00295 * 2 1 4 4 C 1.53007 * 109.47379 * 125.00090 * 3 2 1 5 5 C 1.52998 * 109.47277 * 180.02562 * 4 3 2 6 6 H 1.08993 * 110.65908 * 56.45446 * 5 4 3 7 7 N 1.47319 * 110.59475 * 293.54301 * 5 4 3 8 8 C 1.34526 * 106.61635 * 241.47348 * 7 5 4 9 9 O 1.21543 * 123.76817 * 180.02562 * 8 7 5 10 10 N 1.33787 * 112.45950 * 0.26762 * 8 7 5 11 11 C 1.46506 * 124.17858 * 179.69372 * 10 8 7 12 12 C 1.52995 * 109.47226 * 90.02424 * 11 10 8 13 13 C 1.52998 * 109.47121 * 300.00312 * 12 11 10 14 14 C 1.53003 * 109.47010 * 59.99920 * 12 11 10 15 15 C 1.52995 * 109.47269 * 180.02562 * 12 11 10 16 16 C 1.50706 * 109.47420 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99673 * 0.02562 * 16 15 12 18 18 C 1.37874 * 119.99915 * 179.97438 * 16 15 12 19 19 N 1.31512 * 120.00403 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99615 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47318 * 90.00389 * 20 18 16 22 22 H 1.48499 * 109.47324 * 210.00469 * 20 18 16 23 23 H 1.48507 * 109.47350 * 330.00225 * 20 18 16 24 24 C 1.34769 * 111.64565 * 359.53813 * 10 8 7 25 25 O 1.21233 * 127.15754 * 180.14345 * 24 10 8 26 26 H 1.08000 * 120.00119 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99673 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99944 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47228 * 4.99965 * 3 2 1 30 30 H 1.09002 * 109.47282 * 244.99942 * 3 2 1 31 31 H 1.08997 * 109.47043 * 59.99761 * 4 3 2 32 32 H 1.09002 * 109.46793 * 300.00151 * 4 3 2 33 33 H 0.96998 * 126.68994 * 61.45715 * 7 5 4 34 34 H 1.09001 * 109.46953 * 210.02578 * 11 10 8 35 35 H 1.08999 * 109.46670 * 330.02352 * 11 10 8 36 36 H 1.08998 * 109.47469 * 60.00227 * 13 12 11 37 37 H 1.09005 * 109.47099 * 179.97438 * 13 12 11 38 38 H 1.08994 * 109.47036 * 299.99490 * 13 12 11 39 39 H 1.09007 * 109.46959 * 60.00323 * 14 12 11 40 40 H 1.08999 * 109.47276 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47244 * 300.00211 * 14 12 11 42 42 H 1.09007 * 109.47246 * 300.00011 * 15 12 11 43 43 H 1.08994 * 109.47335 * 60.00236 * 15 12 11 44 44 H 0.97003 * 119.99763 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6582 1.1820 6 1 3.1088 3.5008 1.2081 7 7 4.6820 2.7478 0.0056 8 6 5.9394 2.8438 0.4742 9 8 6.9204 2.9350 -0.2375 10 7 5.9897 2.8224 1.8110 11 6 7.2281 2.9044 2.5894 12 6 7.5466 4.3707 2.8881 13 6 7.7194 5.1332 1.5730 14 6 6.3989 4.9889 3.6890 15 6 8.8403 4.4563 3.7005 16 6 9.1537 5.9006 3.9953 17 1 8.4957 6.6795 3.6392 18 6 10.2798 6.2275 4.7204 19 7 11.0808 5.2790 5.1545 20 14 10.6687 8.0179 5.0852 21 1 10.0317 8.4114 6.3676 22 1 12.1395 8.1939 5.1886 23 1 10.1438 8.8717 3.9893 24 6 4.7601 2.7195 2.3531 25 8 4.4808 2.6787 3.5321 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5399 0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 3.7400 0.5064 1.0921 32 1 2.4773 1.2355 2.1130 33 1 4.4095 2.7390 -0.9252 34 1 7.1050 2.3611 3.5263 35 1 8.0457 2.4639 2.0187 36 1 6.7980 5.0723 0.9939 37 1 7.9459 6.1780 1.7858 38 1 8.5370 4.6928 1.0024 39 1 6.2758 4.4457 4.6260 40 1 6.6260 6.0334 3.9023 41 1 5.4775 4.9279 3.1099 42 1 8.7176 3.9130 4.6375 43 1 9.6577 4.0161 3.1295 44 1 11.8733 5.5092 5.6644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419939756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:13 Heat of formation + Delta-G solvation = -44.214105 kcal Electronic energy + Delta-G solvation = -24476.996450 eV Core-core repulsion = 21009.185832 eV Total energy + Delta-G solvation = -3467.810618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.43070 -38.45680 -37.52567 -36.45392 -35.55044 -33.85899 -32.17457 -31.13411 -27.73350 -26.96175 -26.42685 -26.35419 -23.39414 -23.18652 -21.76198 -20.74079 -20.01493 -18.24301 -17.78929 -17.07873 -16.41150 -16.10058 -15.93766 -15.32140 -15.04060 -14.96135 -14.46424 -14.22541 -14.05115 -13.53805 -13.49551 -13.24235 -12.69644 -12.54208 -12.47726 -12.02269 -11.79380 -11.44769 -11.41793 -11.01488 -10.97319 -10.93186 -10.82146 -10.67622 -10.53224 -10.24606 -10.07914 -9.75766 -9.71961 -9.60819 -9.50046 -9.08749 -8.76468 -8.31890 -5.96389 -3.96681 1.69083 1.89786 2.36208 3.11631 3.17632 3.34386 3.40901 3.43821 3.93338 4.21576 4.43418 4.49134 4.74073 4.81954 4.89943 4.99884 5.21495 5.30831 5.39884 5.46730 5.57661 5.58581 5.65909 5.71149 5.74209 5.86119 6.17244 6.22592 6.24251 6.35276 6.38972 6.46100 6.72590 6.75412 6.83516 7.09979 7.17181 7.18979 7.24667 7.51205 7.66006 7.79791 8.02244 8.24228 8.45506 9.07243 9.66002 11.15231 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.003278 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.937018 B = 8539.380162 C = 8788.893746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C -0.092 4.092 4 C -0.113 4.113 5 C 0.092 3.908 6 H 0.124 0.876 7 N -0.731 5.731 8 C 0.701 3.299 9 O -0.535 6.535 10 N -0.566 5.566 11 C 0.125 3.875 12 C -0.075 4.075 13 C -0.118 4.118 14 C -0.121 4.121 15 C 0.037 3.963 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.523 3.477 25 O -0.463 6.463 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.435 0.565 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.023 0.977 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 -9.224 -10.853 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.172 4.172 3 C -0.129 4.129 4 C -0.152 4.152 5 C -0.017 4.017 6 H 0.141 0.859 7 N -0.397 5.397 8 C 0.402 3.598 9 O -0.408 6.408 10 N -0.311 5.311 11 C 0.005 3.995 12 C -0.076 4.076 13 C -0.176 4.176 14 C -0.178 4.178 15 C 0.000 4.000 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C 0.309 3.691 25 O -0.332 6.332 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.279 0.721 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.270 -9.220 -10.400 23.759 hybrid contribution 0.142 0.971 -0.151 0.993 sum -19.129 -8.248 -10.551 23.351 Atomic orbital electron populations 1.23884 0.95950 1.01966 1.01093 1.22903 0.96028 0.98359 0.99921 1.20745 0.97888 0.96080 0.98232 1.21742 0.98186 0.94826 1.00455 1.22121 0.93483 1.01650 0.84482 0.85882 1.45578 1.05688 1.79595 1.08805 1.15890 0.84299 0.77429 0.82176 1.91026 1.36314 1.54003 1.59435 1.46486 1.10307 1.66699 1.07569 1.22124 0.82257 1.00213 0.94923 1.21032 0.98965 0.90814 0.96775 1.21701 0.99213 1.01265 0.95388 1.21732 0.95107 1.02149 0.98817 1.19090 0.89262 0.97585 0.94107 1.21167 1.07834 0.92221 1.33331 0.92327 1.24998 0.96414 0.96999 0.96090 1.69960 1.14204 1.31886 1.37494 0.86643 0.77392 0.85628 0.78625 1.20781 1.21337 1.19963 1.20678 0.83703 0.75018 0.89687 1.90811 1.80869 1.45788 1.15726 0.88493 0.88495 0.87274 0.90864 0.90739 0.90481 0.89074 0.72082 0.89189 0.88977 0.95833 0.91935 0.92907 0.93030 0.91676 0.96047 0.96319 0.96220 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.07 14.32 29.02 0.42 -0.66 16 2 C -0.15 -0.91 9.52 -36.03 -0.34 -1.25 16 3 C -0.09 -0.49 5.56 -27.88 -0.16 -0.65 16 4 C -0.11 -0.79 4.96 -26.73 -0.13 -0.93 16 5 C 0.09 0.82 3.68 -68.20 -0.25 0.57 16 6 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 7 N -0.73 -7.03 5.97 -59.19 -0.35 -7.38 16 8 C 0.70 10.20 7.05 -88.02 -0.62 9.58 16 9 O -0.54 -9.66 16.31 5.33 0.09 -9.57 16 10 N -0.57 -8.62 2.13 -120.73 -0.26 -8.87 16 11 C 0.12 2.22 4.73 -4.04 -0.02 2.20 16 12 C -0.07 -1.54 0.60 -154.51 -0.09 -1.63 16 13 C -0.12 -2.41 7.09 37.16 0.26 -2.15 16 14 C -0.12 -2.40 7.22 37.16 0.27 -2.13 16 15 C 0.04 0.93 4.04 -27.88 -0.11 0.82 16 16 C -0.51 -13.92 7.65 -34.44 -0.26 -14.18 16 17 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 20 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.52 7.12 5.99 -10.56 -0.06 7.06 16 25 O -0.46 -7.48 16.85 5.60 0.09 -7.39 16 26 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 27 H 0.10 0.48 7.84 -52.49 -0.41 0.07 16 28 H 0.11 0.62 8.06 -52.49 -0.42 0.19 16 29 H 0.07 0.34 7.79 -51.93 -0.40 -0.07 16 30 H 0.07 0.35 7.43 -51.93 -0.39 -0.04 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.44 3.01 8.42 -40.82 -0.34 2.66 16 34 H 0.09 1.57 8.01 -51.93 -0.42 1.15 16 35 H 0.09 1.66 7.86 -51.93 -0.41 1.25 16 36 H 0.02 0.43 6.18 -51.93 -0.32 0.11 16 37 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 38 H 0.05 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.37 6.62 -51.93 -0.34 1.03 16 41 H 0.02 0.38 6.18 -51.93 -0.32 0.05 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -32.61 353.31 -7.53 -40.14 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.93 Total: -1.09 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.20 Total: -1.86 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.13 Total: -42.28 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.18 Total: -16.96 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.61 -7.53 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419939756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.073 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds