Wall clock time and date at job start Tue Mar 31 2020 07:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00295 * 2 1 4 4 C 1.53007 * 109.47379 * 125.00090 * 3 2 1 5 5 C 1.52998 * 109.47277 * 180.02562 * 4 3 2 6 6 H 1.08993 * 110.65908 * 56.45446 * 5 4 3 7 7 N 1.47319 * 110.59475 * 293.54301 * 5 4 3 8 8 C 1.34526 * 106.61635 * 241.47348 * 7 5 4 9 9 O 1.21543 * 123.76817 * 180.02562 * 8 7 5 10 10 N 1.33787 * 112.45950 * 0.26762 * 8 7 5 11 11 C 1.46506 * 124.17858 * 179.69372 * 10 8 7 12 12 C 1.52995 * 109.47226 * 90.02424 * 11 10 8 13 13 C 1.52998 * 109.47121 * 300.00312 * 12 11 10 14 14 C 1.53003 * 109.47010 * 59.99920 * 12 11 10 15 15 C 1.52995 * 109.47269 * 180.02562 * 12 11 10 16 16 C 1.50706 * 109.47420 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99673 * 0.02562 * 16 15 12 18 18 C 1.37874 * 119.99915 * 179.97438 * 16 15 12 19 19 N 1.31512 * 120.00403 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99615 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47318 * 90.00389 * 20 18 16 22 22 H 1.48499 * 109.47324 * 210.00469 * 20 18 16 23 23 H 1.48507 * 109.47350 * 330.00225 * 20 18 16 24 24 C 1.34769 * 111.64565 * 359.53813 * 10 8 7 25 25 O 1.21233 * 127.15754 * 180.14345 * 24 10 8 26 26 H 1.08000 * 120.00119 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99673 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99944 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47228 * 4.99965 * 3 2 1 30 30 H 1.09002 * 109.47282 * 244.99942 * 3 2 1 31 31 H 1.08997 * 109.47043 * 59.99761 * 4 3 2 32 32 H 1.09002 * 109.46793 * 300.00151 * 4 3 2 33 33 H 0.96998 * 126.68994 * 61.45715 * 7 5 4 34 34 H 1.09001 * 109.46953 * 210.02578 * 11 10 8 35 35 H 1.08999 * 109.46670 * 330.02352 * 11 10 8 36 36 H 1.08998 * 109.47469 * 60.00227 * 13 12 11 37 37 H 1.09005 * 109.47099 * 179.97438 * 13 12 11 38 38 H 1.08994 * 109.47036 * 299.99490 * 13 12 11 39 39 H 1.09007 * 109.46959 * 60.00323 * 14 12 11 40 40 H 1.08999 * 109.47276 * 179.97438 * 14 12 11 41 41 H 1.08998 * 109.47244 * 300.00211 * 14 12 11 42 42 H 1.09007 * 109.47246 * 300.00011 * 15 12 11 43 43 H 1.08994 * 109.47335 * 60.00236 * 15 12 11 44 44 H 0.97003 * 119.99763 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7997 2.6582 1.1820 6 1 3.1088 3.5008 1.2081 7 7 4.6820 2.7478 0.0056 8 6 5.9394 2.8438 0.4742 9 8 6.9204 2.9350 -0.2375 10 7 5.9897 2.8224 1.8110 11 6 7.2281 2.9044 2.5894 12 6 7.5466 4.3707 2.8881 13 6 7.7194 5.1332 1.5730 14 6 6.3989 4.9889 3.6890 15 6 8.8403 4.4563 3.7005 16 6 9.1537 5.9006 3.9953 17 1 8.4957 6.6795 3.6392 18 6 10.2798 6.2275 4.7204 19 7 11.0808 5.2790 5.1545 20 14 10.6687 8.0179 5.0852 21 1 10.0317 8.4114 6.3676 22 1 12.1395 8.1939 5.1886 23 1 10.1438 8.8717 3.9893 24 6 4.7601 2.7195 2.3531 25 8 4.4808 2.6787 3.5321 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5399 0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 3.7400 0.5064 1.0921 32 1 2.4773 1.2355 2.1130 33 1 4.4095 2.7390 -0.9252 34 1 7.1050 2.3611 3.5263 35 1 8.0457 2.4639 2.0187 36 1 6.7980 5.0723 0.9939 37 1 7.9459 6.1780 1.7858 38 1 8.5370 4.6928 1.0024 39 1 6.2758 4.4457 4.6260 40 1 6.6260 6.0334 3.9023 41 1 5.4775 4.9279 3.1099 42 1 8.7176 3.9130 4.6375 43 1 9.6577 4.0161 3.1295 44 1 11.8733 5.5092 5.6644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419939756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:13 Heat of formation + Delta-G solvation = -64.959853 kcal Electronic energy + Delta-G solvation = -24477.896053 eV Core-core repulsion = 21009.185832 eV Total energy + Delta-G solvation = -3468.710221 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.53992 -39.63252 -38.88536 -37.56987 -36.44064 -35.15272 -34.06527 -31.81734 -29.30611 -28.56121 -28.09771 -27.41172 -25.14244 -24.30134 -22.61465 -21.82787 -20.54497 -19.76578 -18.94653 -18.40842 -18.14835 -17.33214 -16.70230 -16.63432 -16.33695 -15.91464 -15.76168 -15.43199 -15.22814 -15.09370 -14.54450 -14.45196 -14.11357 -13.99048 -13.55886 -13.14466 -13.09559 -12.84185 -12.75130 -12.61247 -12.57930 -12.38490 -12.15753 -11.98098 -11.91163 -11.82203 -11.51795 -11.36251 -11.14270 -10.99884 -10.56617 -10.51726 -10.35980 -10.12865 -8.15076 -6.22196 0.63077 1.24396 1.40917 1.41411 1.47271 1.51900 2.01243 2.23557 2.43477 2.97931 3.19011 3.58425 3.77693 3.95198 3.96697 4.10610 4.23300 4.30611 4.39671 4.40227 4.44088 4.56239 4.65825 4.69103 4.73949 4.83793 4.87883 5.02690 5.03666 5.13216 5.17147 5.27125 5.34615 5.41299 5.42748 5.51556 5.74654 5.83934 5.86982 5.87855 5.95142 6.14319 6.29757 6.43393 6.90551 7.17176 7.44680 8.97194 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.003278 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.937018 B = 8539.380162 C = 8788.893746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C -0.087 4.087 4 C -0.106 4.106 5 C 0.107 3.893 6 H 0.159 0.841 7 N -0.703 5.703 8 C 0.697 3.303 9 O -0.575 6.575 10 N -0.573 5.573 11 C 0.133 3.867 12 C -0.070 4.070 13 C -0.105 4.105 14 C -0.109 4.109 15 C 0.044 3.956 16 C -0.516 4.516 17 H 0.064 0.936 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.957 3.043 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.264 1.264 24 C 0.516 3.484 25 O -0.490 6.490 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.452 0.548 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.043 0.957 42 H -0.006 1.006 43 H -0.008 1.008 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.536 -8.408 -12.055 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.183 4.183 3 C -0.124 4.124 4 C -0.145 4.145 5 C -0.001 4.001 6 H 0.176 0.824 7 N -0.369 5.369 8 C 0.398 3.602 9 O -0.451 6.451 10 N -0.318 5.318 11 C 0.012 3.988 12 C -0.070 4.070 13 C -0.162 4.162 14 C -0.166 4.166 15 C 0.006 3.994 16 C -0.554 4.554 17 H 0.082 0.918 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.189 1.189 24 C 0.304 3.696 25 O -0.361 6.361 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.299 0.701 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.013 0.987 43 H 0.010 0.990 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.950 -8.411 -11.638 26.229 hybrid contribution 0.899 0.633 0.227 1.123 sum -21.051 -7.777 -11.411 25.176 Atomic orbital electron populations 1.24037 0.96024 1.02566 1.00506 1.22985 0.96257 0.98655 1.00452 1.20730 0.97709 0.96310 0.97646 1.21714 0.98108 0.93126 1.01523 1.22275 0.92280 1.04153 0.81430 0.82415 1.45446 1.03849 1.77701 1.09940 1.16014 0.85239 0.77374 0.81580 1.91009 1.37999 1.56001 1.60062 1.46461 1.10076 1.67174 1.08063 1.21714 0.83758 0.98035 0.95339 1.20852 0.96937 0.92998 0.96258 1.21540 0.99567 1.00002 0.95098 1.21586 0.95593 1.00869 0.98548 1.18930 0.90943 0.96220 0.93290 1.21526 1.07800 0.93275 1.32788 0.91772 1.25889 0.96434 1.01479 0.96096 1.70096 1.14799 1.34166 1.38477 0.85568 0.77123 0.80301 0.78794 1.19998 1.21156 1.18875 1.21473 0.83737 0.73856 0.90522 1.90803 1.81174 1.46860 1.17301 0.88239 0.87719 0.87528 0.89393 0.89743 0.91209 0.88928 0.70058 0.89301 0.89774 0.93869 0.93249 0.94415 0.93994 0.92982 0.93763 0.98736 0.98953 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 14.32 67.78 0.97 -0.73 16 2 C -0.17 -1.52 9.52 25.65 0.24 -1.28 16 3 C -0.09 -0.61 5.56 29.85 0.17 -0.44 16 4 C -0.11 -1.15 4.96 30.60 0.15 -1.00 16 5 C 0.11 1.53 3.68 44.37 0.16 1.69 16 6 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 7 N -0.70 -11.28 5.97 -459.61 -2.74 -14.02 16 8 C 0.70 19.17 7.05 179.44 1.27 20.43 16 9 O -0.57 -20.37 16.31 -3.85 -0.06 -20.44 16 10 N -0.57 -16.88 2.13 -773.12 -1.65 -18.53 16 11 C 0.13 4.82 4.73 86.38 0.41 5.23 16 12 C -0.07 -2.89 0.60 -52.18 -0.03 -2.92 16 13 C -0.10 -4.27 7.09 71.98 0.51 -3.76 16 14 C -0.11 -4.27 7.22 71.98 0.52 -3.75 16 15 C 0.04 2.29 4.04 29.85 0.12 2.42 16 16 C -0.52 -28.82 7.65 25.60 0.20 -28.63 16 17 H 0.06 3.45 5.68 -2.91 -0.02 3.44 16 18 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 20 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 24 C 0.52 13.05 5.99 87.94 0.53 13.57 16 25 O -0.49 -15.21 16.85 -2.88 -0.05 -15.26 16 26 H 0.10 0.79 8.06 -2.91 -0.02 0.76 16 27 H 0.10 0.74 7.84 -2.91 -0.02 0.71 16 28 H 0.11 1.01 8.06 -2.91 -0.02 0.98 16 29 H 0.09 0.41 7.79 -2.39 -0.02 0.39 16 30 H 0.08 0.45 7.43 -2.39 -0.02 0.43 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.45 4.52 8.42 -92.71 -0.78 3.74 16 34 H 0.09 3.20 8.01 -2.39 -0.02 3.18 16 35 H 0.08 3.16 7.86 -2.39 -0.02 3.14 16 36 H 0.04 1.56 6.18 -2.39 -0.01 1.55 16 37 H 0.05 2.11 6.62 -2.38 -0.02 2.09 16 38 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 39 H 0.04 1.70 8.14 -2.38 -0.02 1.69 16 40 H 0.05 2.16 6.62 -2.39 -0.02 2.15 16 41 H 0.04 1.51 6.18 -2.39 -0.01 1.49 16 42 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 43 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 44 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -72.12 353.31 3.69 -68.42 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.21 Total: 8.71 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.68 Total: 1.19 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -4.11 Total: -89.50 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.11 Total: -35.69 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -72.12 3.69 -68.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419939756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.461 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds