Wall clock time and date at job start Tue Mar 31 2020 07:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46991 * 2 1 4 4 H 1.08997 * 109.47097 * 55.00257 * 3 2 1 5 5 C 1.53006 * 109.47008 * 295.00136 * 3 2 1 6 6 C 1.53004 * 109.47163 * 175.00167 * 3 2 1 7 7 H 1.08996 * 110.53433 * 61.37328 * 6 3 2 8 8 N 1.47309 * 110.59500 * 298.54834 * 6 3 2 9 9 C 1.34532 * 106.61436 * 241.31767 * 8 6 3 10 10 O 1.21542 * 123.76559 * 180.02562 * 9 8 6 11 11 N 1.33791 * 112.45989 * 0.02562 * 9 8 6 12 12 C 1.46496 * 124.17675 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.43165 * 178.93341 * 12 11 9 14 14 C 1.54261 * 110.48711 * 301.47379 * 12 11 9 15 15 C 1.53876 * 106.59990 * 142.28862 * 14 12 11 16 16 C 1.54267 * 106.59870 * 0.02562 * 15 14 12 17 17 H 1.09004 * 110.48597 * 95.06674 * 16 15 14 18 18 C 1.50701 * 110.48772 * 217.70999 * 16 15 14 19 19 H 1.08001 * 119.99746 * 118.54331 * 18 16 15 20 20 C 1.37877 * 120.00009 * 298.54805 * 18 16 15 21 21 N 1.31515 * 119.99767 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99922 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47128 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47146 * 119.99851 * 22 20 18 25 25 H 1.48507 * 109.46889 * 239.99701 * 22 20 18 26 26 C 1.54888 * 110.48901 * 56.25184 * 12 11 9 27 27 C 1.34762 * 111.64163 * 0.22667 * 11 9 8 28 28 O 1.21237 * 127.15871 * 179.74047 * 27 11 9 29 29 H 1.08997 * 109.46919 * 59.99925 * 1 2 3 30 30 H 1.09001 * 109.46559 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47008 * 299.99811 * 1 2 3 32 32 H 1.09004 * 109.47196 * 240.00298 * 2 1 3 33 33 H 1.09000 * 109.47650 * 120.00061 * 2 1 3 34 34 H 1.08994 * 109.47240 * 59.99992 * 5 3 2 35 35 H 1.08999 * 109.46689 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.46583 * 299.99764 * 5 3 2 37 37 H 0.96998 * 126.69695 * 61.35717 * 8 6 3 38 38 H 1.08998 * 110.03492 * 23.00736 * 14 12 11 39 39 H 1.08999 * 110.07717 * 261.59447 * 14 12 11 40 40 H 1.08995 * 110.03160 * 119.28453 * 15 14 12 41 41 H 1.08998 * 110.03319 * 240.71542 * 15 14 12 42 42 H 0.97000 * 119.99775 * 180.02562 * 21 20 18 43 43 H 1.09005 * 110.75648 * 321.69162 * 26 12 11 44 44 H 1.08999 * 110.75852 * 85.06093 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5649 1.4444 0.1257 7 1 4.0189 0.9301 -0.7212 8 7 3.9810 0.8215 1.3941 9 6 4.6395 1.7667 2.0890 10 8 5.1209 1.5835 3.1899 11 7 4.7053 2.9308 1.4328 12 6 5.3626 4.1325 1.9525 13 1 5.2992 4.9444 1.2280 14 6 4.7307 4.5559 3.2946 15 6 5.8812 5.0626 4.1818 16 6 7.1722 4.9301 3.3476 17 1 7.4029 5.8718 2.8495 18 6 8.3222 4.4981 4.2205 19 1 8.8265 3.5632 4.0257 20 6 8.7305 5.2965 5.2679 21 7 8.1166 6.4352 5.5048 22 14 10.1564 4.7614 6.3494 23 1 10.6722 3.4517 5.8763 24 1 11.2392 5.7752 6.2784 25 1 9.6910 4.6317 7.7537 26 6 6.8402 3.8321 2.3064 27 6 4.0875 2.8629 0.2370 28 8 3.9749 3.7510 -0.5805 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8899 34 1 0.5489 2.1253 -1.3969 35 1 1.9989 3.1541 -1.3075 36 1 2.0699 1.5875 -2.1491 37 1 3.8136 -0.0921 1.6735 38 1 4.2453 3.7008 3.7650 39 1 4.0057 5.3534 3.1317 40 1 5.7151 6.1062 4.4487 41 1 5.9542 4.4534 5.0827 42 1 8.4041 6.9970 6.2414 43 1 6.9380 2.8397 2.7466 44 1 7.4758 3.9297 1.4263 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419986322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:36 Heat of formation + Delta-G solvation = -66.775039 kcal Electronic energy + Delta-G solvation = -24805.132878 eV Core-core repulsion = 21336.343945 eV Total energy + Delta-G solvation = -3468.788933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40234 -38.56849 -37.74996 -36.59152 -35.47127 -33.53026 -31.95158 -30.40536 -28.21996 -27.51611 -26.85213 -24.64740 -23.92353 -22.80626 -21.12479 -20.57234 -19.23773 -19.11214 -17.97801 -16.88049 -16.31687 -16.21367 -15.50895 -15.25892 -14.95685 -14.57558 -14.51752 -14.26914 -14.17501 -13.83143 -13.33972 -12.87466 -12.67401 -12.43608 -12.26556 -12.03409 -11.91110 -11.66000 -11.45660 -11.14919 -11.07726 -11.01407 -10.93797 -10.56084 -10.50618 -10.20018 -9.93090 -9.70657 -9.53102 -9.44151 -9.39526 -8.91581 -8.66016 -8.31708 -5.94072 -3.95541 1.71239 2.40976 3.15290 3.23468 3.35509 3.43203 3.48345 3.94859 4.24907 4.42793 4.51284 4.65825 4.80979 5.04911 5.15800 5.21283 5.25736 5.32397 5.36703 5.51639 5.59065 5.61280 5.62381 5.69189 5.75443 5.77313 5.80579 5.95436 6.11362 6.30886 6.52476 6.57704 6.65555 6.78813 6.85627 7.00703 7.24196 7.36302 7.42687 7.52691 7.77527 7.95983 8.07909 8.34047 8.53018 9.06096 9.67747 11.15816 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032655 B = 0.003656 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.230614 B = 7657.083879 C = 7970.211176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.089 4.089 4 H 0.080 0.920 5 C -0.157 4.157 6 C 0.096 3.904 7 H 0.122 0.878 8 N -0.732 5.732 9 C 0.697 3.303 10 O -0.519 6.519 11 N -0.563 5.563 12 C 0.137 3.863 13 H 0.102 0.898 14 C -0.133 4.133 15 C -0.088 4.088 16 C 0.054 3.946 17 H 0.030 0.970 18 C -0.507 4.507 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.125 4.125 27 C 0.522 3.478 28 O -0.473 6.473 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.435 0.565 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.258 0.742 43 H 0.078 0.922 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 -11.968 -13.059 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.108 4.108 4 H 0.099 0.901 5 C -0.214 4.214 6 C -0.014 4.014 7 H 0.140 0.860 8 N -0.398 5.398 9 C 0.397 3.603 10 O -0.390 6.390 11 N -0.308 5.308 12 C 0.036 3.964 13 H 0.120 0.880 14 C -0.171 4.171 15 C -0.127 4.127 16 C 0.035 3.965 17 H 0.048 0.952 18 C -0.545 4.545 19 H 0.074 0.926 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.164 4.164 27 C 0.309 3.691 28 O -0.344 6.344 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.279 0.721 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.816 -11.305 -12.728 22.568 hybrid contribution 0.641 -0.677 0.768 1.208 sum -14.175 -11.982 -11.960 22.080 Atomic orbital electron populations 1.21802 0.95233 1.01785 1.02229 1.21555 0.96579 0.95091 1.02264 1.21354 0.90998 0.97997 1.00482 0.90116 1.21971 1.01757 1.02162 0.95525 1.22146 0.97518 0.92172 0.89516 0.86027 1.45633 1.60503 1.14480 1.19195 1.15966 0.79491 0.80550 0.84270 1.91081 1.49572 1.80855 1.17519 1.46678 1.51700 1.13720 1.18707 1.22572 0.94490 0.82778 0.96520 0.87950 1.22593 0.99686 1.00043 0.94772 1.21995 0.92934 0.99999 0.97755 1.19387 0.93208 0.92508 0.91378 0.95165 1.21141 1.15074 1.05504 1.12803 0.92586 1.24965 0.96664 0.94942 0.97462 1.69981 1.41009 1.11712 1.30254 0.86575 0.82526 0.78611 0.80526 1.19813 1.21162 1.21108 1.23022 0.90465 1.03128 0.99736 1.20776 0.77135 0.89807 0.81386 1.90750 1.55947 1.44018 1.43653 0.92221 0.92596 0.92605 0.91396 0.91790 0.91770 0.90647 0.92194 0.72070 0.91924 0.93019 0.92403 0.92467 0.93219 0.90314 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.12 -0.69 5.34 -26.73 -0.14 -0.83 16 3 C -0.09 -0.70 2.17 -90.61 -0.20 -0.90 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.16 -1.21 8.71 37.16 0.32 -0.89 16 6 C 0.10 0.92 3.21 -68.21 -0.22 0.70 16 7 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 8 N -0.73 -7.83 5.86 -59.19 -0.35 -8.18 16 9 C 0.70 11.15 7.72 -88.02 -0.68 10.47 16 10 O -0.52 -10.50 14.92 5.33 0.08 -10.42 16 11 N -0.56 -9.16 2.61 -111.83 -0.29 -9.45 16 12 C 0.14 2.58 3.42 -66.28 -0.23 2.36 16 13 H 0.10 1.87 7.70 -51.93 -0.40 1.47 16 14 C -0.13 -2.65 6.27 -25.61 -0.16 -2.81 16 15 C -0.09 -2.13 5.40 -25.61 -0.14 -2.27 16 16 C 0.05 1.38 2.80 -90.10 -0.25 1.12 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.51 -14.34 8.40 -34.44 -0.29 -14.63 16 19 H 0.06 1.59 7.77 -52.49 -0.41 1.18 16 20 C 0.06 1.73 5.33 -17.82 -0.09 1.63 16 21 N -0.89 -25.99 12.35 55.43 0.68 -25.30 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 C -0.13 -2.73 5.75 -24.73 -0.14 -2.87 16 27 C 0.52 7.27 7.44 -10.56 -0.08 7.19 16 28 O -0.47 -7.43 15.59 5.59 0.09 -7.35 16 29 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.36 7.00 -51.93 -0.36 0.00 16 34 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 35 H 0.07 0.76 6.09 -51.93 -0.32 0.45 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.44 3.51 8.13 -40.82 -0.33 3.18 16 38 H 0.06 1.27 6.53 -51.93 -0.34 0.94 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.45 7.94 -51.93 -0.41 1.04 16 41 H 0.06 1.51 7.83 -51.93 -0.41 1.11 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.08 1.85 6.19 -51.93 -0.32 1.52 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -32.00 343.68 -8.49 -40.48 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.92 Total: 0.37 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.94 Total: -2.23 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.05 Total: -42.94 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.17 Total: -17.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.00 -8.49 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419986322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.293 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds