Wall clock time and date at job start Tue Mar 31 2020 07:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46991 * 2 1 4 4 H 1.08997 * 109.47097 * 55.00257 * 3 2 1 5 5 C 1.53006 * 109.47008 * 295.00136 * 3 2 1 6 6 C 1.53004 * 109.47163 * 175.00167 * 3 2 1 7 7 H 1.08996 * 110.53433 * 61.37328 * 6 3 2 8 8 N 1.47309 * 110.59500 * 298.54834 * 6 3 2 9 9 C 1.34532 * 106.61436 * 241.31767 * 8 6 3 10 10 O 1.21542 * 123.76559 * 180.02562 * 9 8 6 11 11 N 1.33791 * 112.45989 * 0.02562 * 9 8 6 12 12 C 1.46496 * 124.17675 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.43165 * 178.93341 * 12 11 9 14 14 C 1.54261 * 110.48711 * 301.47379 * 12 11 9 15 15 C 1.53876 * 106.59990 * 142.28862 * 14 12 11 16 16 C 1.54267 * 106.59870 * 0.02562 * 15 14 12 17 17 H 1.09004 * 110.48597 * 95.06674 * 16 15 14 18 18 C 1.50701 * 110.48772 * 217.70999 * 16 15 14 19 19 H 1.08001 * 119.99746 * 118.54331 * 18 16 15 20 20 C 1.37877 * 120.00009 * 298.54805 * 18 16 15 21 21 N 1.31515 * 119.99767 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99922 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47128 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47146 * 119.99851 * 22 20 18 25 25 H 1.48507 * 109.46889 * 239.99701 * 22 20 18 26 26 C 1.54888 * 110.48901 * 56.25184 * 12 11 9 27 27 C 1.34762 * 111.64163 * 0.22667 * 11 9 8 28 28 O 1.21237 * 127.15871 * 179.74047 * 27 11 9 29 29 H 1.08997 * 109.46919 * 59.99925 * 1 2 3 30 30 H 1.09001 * 109.46559 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47008 * 299.99811 * 1 2 3 32 32 H 1.09004 * 109.47196 * 240.00298 * 2 1 3 33 33 H 1.09000 * 109.47650 * 120.00061 * 2 1 3 34 34 H 1.08994 * 109.47240 * 59.99992 * 5 3 2 35 35 H 1.08999 * 109.46689 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.46583 * 299.99764 * 5 3 2 37 37 H 0.96998 * 126.69695 * 61.35717 * 8 6 3 38 38 H 1.08998 * 110.03492 * 23.00736 * 14 12 11 39 39 H 1.08999 * 110.07717 * 261.59447 * 14 12 11 40 40 H 1.08995 * 110.03160 * 119.28453 * 15 14 12 41 41 H 1.08998 * 110.03319 * 240.71542 * 15 14 12 42 42 H 0.97000 * 119.99775 * 180.02562 * 21 20 18 43 43 H 1.09005 * 110.75648 * 321.69162 * 26 12 11 44 44 H 1.08999 * 110.75852 * 85.06093 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5649 1.4444 0.1257 7 1 4.0189 0.9301 -0.7212 8 7 3.9810 0.8215 1.3941 9 6 4.6395 1.7667 2.0890 10 8 5.1209 1.5835 3.1899 11 7 4.7053 2.9308 1.4328 12 6 5.3626 4.1325 1.9525 13 1 5.2992 4.9444 1.2280 14 6 4.7307 4.5559 3.2946 15 6 5.8812 5.0626 4.1818 16 6 7.1722 4.9301 3.3476 17 1 7.4029 5.8718 2.8495 18 6 8.3222 4.4981 4.2205 19 1 8.8265 3.5632 4.0257 20 6 8.7305 5.2965 5.2679 21 7 8.1166 6.4352 5.5048 22 14 10.1564 4.7614 6.3494 23 1 10.6722 3.4517 5.8763 24 1 11.2392 5.7752 6.2784 25 1 9.6910 4.6317 7.7537 26 6 6.8402 3.8321 2.3064 27 6 4.0875 2.8629 0.2370 28 8 3.9749 3.7510 -0.5805 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8899 34 1 0.5489 2.1253 -1.3969 35 1 1.9989 3.1541 -1.3075 36 1 2.0699 1.5875 -2.1491 37 1 3.8136 -0.0921 1.6735 38 1 4.2453 3.7008 3.7650 39 1 4.0057 5.3534 3.1317 40 1 5.7151 6.1062 4.4487 41 1 5.9542 4.4534 5.0827 42 1 8.4041 6.9970 6.2414 43 1 6.9380 2.8397 2.7466 44 1 7.4758 3.9297 1.4263 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419986322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:36 Heat of formation + Delta-G solvation = -87.173867 kcal Electronic energy + Delta-G solvation = -24806.017437 eV Core-core repulsion = 21336.343945 eV Total energy + Delta-G solvation = -3469.673493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.56719 -39.79698 -39.11636 -37.80316 -36.62685 -35.02647 -33.73328 -31.00667 -30.11486 -29.16099 -27.76165 -26.18320 -25.08397 -24.07072 -22.33347 -21.32834 -21.03332 -20.62155 -19.17747 -18.33210 -17.87035 -17.34156 -16.73074 -16.51470 -16.44228 -16.10204 -15.98314 -15.47300 -15.16102 -14.65745 -14.62204 -14.18247 -14.06101 -13.79473 -13.47531 -13.24636 -12.95095 -12.82832 -12.69453 -12.59196 -12.49742 -12.37389 -12.23525 -11.98747 -11.79870 -11.54257 -11.46811 -11.33174 -11.27247 -10.89567 -10.78294 -10.61101 -10.50055 -10.34237 -8.12848 -6.21494 0.59516 1.21058 1.38643 1.40286 1.52298 1.98493 2.20360 2.43474 2.94771 3.17758 3.52348 3.69227 3.81688 3.86217 4.02673 4.07033 4.23592 4.27303 4.42411 4.52730 4.65101 4.66368 4.70503 4.77397 4.80852 4.85627 4.93191 5.03707 5.06444 5.10308 5.16363 5.24190 5.25587 5.35674 5.44948 5.47404 5.57057 5.64411 5.86607 5.87469 5.95950 6.15441 6.37030 6.40408 6.86304 7.17313 7.44904 8.96485 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032655 B = 0.003656 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.230614 B = 7657.083879 C = 7970.211176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.083 4.083 4 H 0.066 0.934 5 C -0.154 4.154 6 C 0.108 3.892 7 H 0.159 0.841 8 N -0.705 5.705 9 C 0.692 3.308 10 O -0.569 6.569 11 N -0.572 5.572 12 C 0.148 3.852 13 H 0.112 0.888 14 C -0.120 4.120 15 C -0.077 4.077 16 C 0.045 3.955 17 H 0.010 0.990 18 C -0.529 4.529 19 H 0.047 0.953 20 C 0.012 3.988 21 N -0.917 5.917 22 Si 0.953 3.047 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.281 1.281 26 C -0.114 4.114 27 C 0.518 3.482 28 O -0.490 6.490 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.451 0.549 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.061 0.939 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.176 -13.877 -14.714 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.102 4.102 4 H 0.084 0.916 5 C -0.211 4.211 6 C 0.000 4.000 7 H 0.176 0.824 8 N -0.371 5.371 9 C 0.393 3.607 10 O -0.444 6.444 11 N -0.317 5.317 12 C 0.047 3.953 13 H 0.130 0.870 14 C -0.159 4.159 15 C -0.116 4.116 16 C 0.026 3.974 17 H 0.028 0.972 18 C -0.567 4.567 19 H 0.065 0.935 20 C -0.186 4.186 21 N -0.556 5.556 22 Si 0.779 3.221 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.207 1.207 26 C -0.152 4.152 27 C 0.307 3.693 28 O -0.362 6.362 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.298 0.702 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.938 -13.259 -14.434 25.262 hybrid contribution 0.936 -0.066 1.225 1.542 sum -15.002 -13.324 -13.210 24.023 Atomic orbital electron populations 1.21811 0.95070 1.02285 1.01994 1.21556 0.96662 0.93392 1.03442 1.21354 0.89157 0.99546 1.00180 0.91551 1.21946 1.02630 1.00738 0.95834 1.22364 0.98856 0.89100 0.89686 0.82381 1.45491 1.58554 1.14249 1.18783 1.16124 0.79583 0.81109 0.83868 1.91055 1.51942 1.81659 1.19777 1.46603 1.52124 1.13109 1.19818 1.22167 0.92621 0.84335 0.96210 0.87005 1.22419 0.98386 1.00483 0.94574 1.21734 0.94355 0.98339 0.97146 1.19361 0.93093 0.92738 0.92191 0.97201 1.21451 1.16163 1.05335 1.13788 0.93483 1.25733 0.99197 0.95007 0.98707 1.70086 1.42236 1.12521 1.30772 0.85579 0.79522 0.78403 0.78615 1.19456 1.20178 1.20668 1.22778 0.92943 1.00698 0.98793 1.21464 0.76337 0.91447 0.80075 1.90750 1.56350 1.45190 1.43862 0.91845 0.91754 0.93528 0.89543 0.91298 0.90581 0.93176 0.90617 0.70189 0.92252 0.90738 0.94117 0.95693 0.93031 0.92028 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 71.98 0.70 -0.58 16 2 C -0.11 -0.89 5.34 30.60 0.16 -0.73 16 3 C -0.08 -1.05 2.17 -10.79 -0.02 -1.07 16 4 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.15 -1.93 8.71 71.98 0.63 -1.30 16 6 C 0.11 1.73 3.21 44.37 0.14 1.87 16 7 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 8 N -0.70 -13.29 5.86 -459.61 -2.69 -15.98 16 9 C 0.69 21.52 7.72 179.44 1.38 22.91 16 10 O -0.57 -23.24 14.92 -3.85 -0.06 -23.30 16 11 N -0.57 -18.05 2.61 -744.96 -1.94 -19.99 16 12 C 0.15 5.60 3.42 46.06 0.16 5.76 16 13 H 0.11 4.02 7.70 -2.39 -0.02 4.00 16 14 C -0.12 -4.86 6.27 31.32 0.20 -4.67 16 15 C -0.08 -3.88 5.40 31.32 0.17 -3.71 16 16 C 0.05 2.38 2.80 -10.46 -0.03 2.35 16 17 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 18 C -0.53 -30.94 8.40 25.60 0.22 -30.72 16 19 H 0.05 2.76 7.77 -2.91 -0.02 2.74 16 20 C 0.01 0.72 5.33 84.65 0.45 1.17 16 21 N -0.92 -54.86 12.35 21.45 0.26 -54.60 16 22 Si 0.95 45.72 29.54 68.60 2.03 47.75 16 23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 C -0.11 -5.06 5.75 31.89 0.18 -4.88 16 27 C 0.52 13.43 7.44 87.94 0.65 14.09 16 28 O -0.49 -14.61 15.59 -2.90 -0.05 -14.66 16 29 H 0.06 0.48 6.56 -2.39 -0.02 0.46 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.07 0.50 7.00 -2.39 -0.02 0.49 16 34 H 0.08 0.78 6.56 -2.39 -0.02 0.77 16 35 H 0.05 0.91 6.09 -2.39 -0.01 0.90 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.45 5.89 8.13 -92.71 -0.75 5.14 16 38 H 0.06 2.45 6.53 -2.39 -0.02 2.43 16 39 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.04 2.13 7.94 -2.39 -0.02 2.11 16 41 H 0.02 1.37 7.83 -2.39 -0.02 1.35 16 42 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.06 2.96 6.19 -2.38 -0.01 2.95 16 44 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -72.12 343.68 2.79 -69.33 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.25 Total: 10.98 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 4.99 Total: 0.48 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -4.37 Total: -90.57 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.10 Total: -37.96 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.12 2.79 -69.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419986322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.847 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds