Wall clock time and date at job start Tue Mar 31 2020 07:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 H 1.09002 * 109.46716 * 55.00469 * 3 2 1 5 5 C 1.52997 * 109.47317 * 295.00560 * 3 2 1 6 6 C 1.52992 * 109.46961 * 175.00098 * 3 2 1 7 7 H 1.09000 * 110.53952 * 305.70671 * 6 3 2 8 8 N 1.47317 * 110.59983 * 68.53727 * 6 3 2 9 9 C 1.34868 * 106.44075 * 118.47485 * 8 6 3 10 10 O 1.21528 * 123.72654 * 180.02562 * 9 8 6 11 11 N 1.33796 * 112.49962 * 0.13891 * 9 8 6 12 12 C 1.46495 * 124.17515 * 179.87557 * 11 9 8 13 13 H 1.09004 * 110.01515 * 180.09823 * 12 11 9 14 14 C 1.53869 * 110.03291 * 301.49212 * 12 11 9 15 15 C 1.54263 * 106.59786 * 119.28663 * 14 12 11 16 16 C 1.54887 * 104.19807 * 23.60896 * 15 14 12 17 17 H 1.09004 * 110.75677 * 80.55790 * 16 15 14 18 18 C 1.50700 * 110.75866 * 203.74371 * 16 15 14 19 19 H 1.07998 * 120.00251 * 118.54699 * 18 16 15 20 20 C 1.37881 * 119.99713 * 298.54949 * 18 16 15 21 21 N 1.31514 * 120.00020 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99881 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47003 * 59.99555 * 22 20 18 24 24 H 1.48498 * 109.47185 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46791 * 299.99701 * 22 20 18 26 26 C 1.54270 * 110.03213 * 58.66151 * 12 11 9 27 27 C 1.34769 * 111.64241 * 359.91053 * 11 9 8 28 28 O 1.21238 * 127.15195 * 180.02562 * 27 11 9 29 29 H 1.08997 * 109.46584 * 299.99168 * 1 2 3 30 30 H 1.08999 * 109.47123 * 59.99430 * 1 2 3 31 31 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46782 * 240.00033 * 2 1 3 33 33 H 1.08997 * 109.47391 * 120.01028 * 2 1 3 34 34 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 35 35 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 37 37 H 0.96996 * 126.68497 * 298.47153 * 8 6 3 38 38 H 1.09002 * 110.03100 * 238.57018 * 14 12 11 39 39 H 1.09002 * 110.03548 * 0.02562 * 14 12 11 40 40 H 1.09010 * 110.48767 * 142.28925 * 15 14 12 41 41 H 1.09005 * 110.48810 * 264.92739 * 15 14 12 42 42 H 0.97008 * 119.99597 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.48438 * 335.77792 * 26 12 11 44 44 H 1.08997 * 110.49013 * 98.42604 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4442 0.1257 7 1 3.8771 0.8733 1.0001 8 7 4.1862 0.9032 -1.0955 9 6 4.9415 1.8946 -1.6109 10 8 5.5966 1.7844 -2.6286 11 7 4.8913 3.0114 -0.8759 12 6 5.6161 4.2427 -1.1994 13 1 5.4115 5.0047 -0.4472 14 6 7.1274 3.9622 -1.2682 15 6 7.5752 4.3096 -2.7030 16 6 6.5071 5.3143 -3.2016 17 1 6.7120 6.3157 -2.8228 18 6 6.4393 5.3186 -4.7071 19 1 5.5245 5.0371 -5.2073 20 6 7.5454 5.6818 -5.4458 21 7 8.6593 6.0250 -4.8367 22 14 7.4617 5.6864 -7.3120 23 1 6.4062 6.6313 -7.7578 24 1 8.7723 6.1121 -7.8653 25 1 7.1396 4.3201 -7.7964 26 6 5.1981 4.7508 -2.5948 27 6 4.0923 2.8634 0.1992 28 8 3.8461 3.6931 1.0483 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5140 0.8898 34 1 2.0698 1.5876 -2.1491 35 1 1.9983 3.1544 -1.3070 36 1 0.5489 2.1253 -1.3968 37 1 4.0732 0.0099 -1.4563 38 1 7.6565 4.5886 -0.5500 39 1 7.3217 2.9098 -1.0613 40 1 8.5611 4.7745 -2.6929 41 1 7.5800 3.4164 -3.3279 42 1 9.4373 6.2809 -5.3565 43 1 4.8190 3.9289 -3.2022 44 1 4.4492 5.5377 -2.5059 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419986326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:40 Heat of formation + Delta-G solvation = -64.153060 kcal Electronic energy + Delta-G solvation = -25139.888191 eV Core-core repulsion = 21671.212955 eV Total energy + Delta-G solvation = -3468.675236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40413 -38.44629 -37.80113 -36.54903 -35.28749 -33.43143 -31.90644 -30.10953 -28.22063 -27.66786 -27.09162 -24.57042 -23.96562 -22.73916 -21.14397 -20.30579 -19.26653 -18.87585 -17.88961 -16.88391 -16.35525 -16.03980 -15.63195 -15.10739 -14.91484 -14.64789 -14.49208 -14.17715 -14.14145 -13.87027 -13.54716 -12.84643 -12.49961 -12.35766 -12.28664 -11.98367 -11.86569 -11.53021 -11.25994 -11.18649 -11.04348 -10.97625 -10.89010 -10.57064 -10.48528 -10.13060 -9.92902 -9.72728 -9.52089 -9.39848 -9.30990 -8.93127 -8.69923 -8.27061 -5.91265 -3.92752 1.75890 2.45623 3.21530 3.31007 3.39336 3.43019 3.46689 3.99904 4.27249 4.47681 4.52794 4.64285 4.85596 5.13157 5.19510 5.20033 5.30070 5.34016 5.40641 5.55765 5.60540 5.63662 5.65665 5.72340 5.75240 5.79020 5.81082 6.00430 6.10783 6.32806 6.51749 6.57858 6.71271 6.81253 6.89704 7.01824 7.32798 7.38816 7.46935 7.56217 7.80897 8.00807 8.12562 8.42001 8.55186 9.07272 9.70035 11.18235 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.004185 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.162763 B = 6689.626692 C = 7173.952238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.089 4.089 4 H 0.093 0.907 5 C -0.154 4.154 6 C 0.096 3.904 7 H 0.121 0.879 8 N -0.732 5.732 9 C 0.695 3.305 10 O -0.511 6.511 11 N -0.563 5.563 12 C 0.140 3.860 13 H 0.097 0.903 14 C -0.131 4.131 15 C -0.093 4.093 16 C 0.056 3.944 17 H 0.030 0.970 18 C -0.506 4.506 19 H 0.053 0.947 20 C 0.063 3.937 21 N -0.891 5.891 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.123 4.123 27 C 0.523 3.477 28 O -0.479 6.479 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.435 0.565 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.259 0.741 43 H 0.071 0.929 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.218 -12.385 12.332 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.112 0.888 5 C -0.211 4.211 6 C -0.014 4.014 7 H 0.138 0.862 8 N -0.399 5.399 9 C 0.396 3.604 10 O -0.381 6.381 11 N -0.308 5.308 12 C 0.040 3.960 13 H 0.115 0.885 14 C -0.169 4.169 15 C -0.131 4.131 16 C 0.037 3.963 17 H 0.048 0.952 18 C -0.545 4.545 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.717 3.283 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.161 4.161 27 C 0.310 3.690 28 O -0.350 6.350 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.279 0.721 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.717 -11.803 12.166 21.191 hybrid contribution -0.030 -0.463 -1.063 1.160 sum -12.747 -12.266 11.103 20.886 Atomic orbital electron populations 1.21808 0.95275 1.01748 1.02249 1.21551 0.96539 0.95058 1.02295 1.21396 0.91030 0.97976 1.00498 0.88842 1.21919 1.01965 1.00618 0.96627 1.22123 0.95535 0.93166 0.90536 0.86181 1.45646 1.50922 1.15517 1.27765 1.16023 0.80672 0.80429 0.83309 1.91114 1.43362 1.81142 1.22488 1.46759 1.44484 1.14898 1.24661 1.22338 0.92403 0.81499 0.99790 0.88520 1.22569 0.92585 1.00146 1.01591 1.22252 1.00720 0.99881 0.90297 1.19504 0.87865 0.93908 0.94974 0.95182 1.21016 0.97656 1.44967 0.90833 0.92847 1.24942 0.95528 0.95221 0.98169 1.69947 1.02010 1.45935 1.35122 0.86707 0.76986 0.78398 0.86176 1.20406 1.21403 1.20314 1.22847 1.00985 0.99890 0.92414 1.20797 0.77944 0.89415 0.80867 1.90767 1.58699 1.48282 1.37297 0.92550 0.92250 0.92643 0.91638 0.91539 0.91819 0.92649 0.91583 0.72114 0.92244 0.92913 0.91388 0.92386 0.93142 0.91035 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.16 0.36 -0.53 16 2 C -0.12 -0.70 5.28 -26.73 -0.14 -0.84 16 3 C -0.09 -0.73 2.29 -90.63 -0.21 -0.94 16 4 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 5 C -0.15 -1.52 8.40 37.16 0.31 -1.21 16 6 C 0.10 0.93 3.40 -68.21 -0.23 0.70 16 7 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 8 N -0.73 -7.93 5.05 -59.10 -0.30 -8.23 16 9 C 0.70 11.25 7.35 -87.71 -0.64 10.60 16 10 O -0.51 -10.56 15.43 5.34 0.08 -10.48 16 11 N -0.56 -9.18 2.51 -112.30 -0.28 -9.46 16 12 C 0.14 2.63 3.44 -66.82 -0.23 2.40 16 13 H 0.10 1.73 7.67 -51.93 -0.40 1.33 16 14 C -0.13 -2.60 5.92 -25.62 -0.15 -2.75 16 15 C -0.09 -2.28 5.51 -25.08 -0.14 -2.41 16 16 C 0.06 1.43 2.82 -89.78 -0.25 1.18 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.51 -14.38 8.54 -34.44 -0.29 -14.67 16 19 H 0.05 1.51 7.78 -52.49 -0.41 1.10 16 20 C 0.06 1.79 5.33 -17.82 -0.10 1.69 16 21 N -0.89 -26.10 12.02 55.43 0.67 -25.44 16 22 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.12 -2.66 5.68 -25.07 -0.14 -2.80 16 27 C 0.52 7.39 6.61 -10.55 -0.07 7.32 16 28 O -0.48 -7.79 17.53 5.59 0.10 -7.69 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.38 7.75 -51.93 -0.40 -0.02 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 35 H 0.05 0.68 7.37 -51.93 -0.38 0.29 16 36 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 37 H 0.43 3.61 8.65 -40.82 -0.35 3.26 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 1.03 7.24 -51.93 -0.38 0.65 16 40 H 0.07 1.77 7.38 -51.92 -0.38 1.39 16 41 H 0.06 1.55 7.80 -51.93 -0.40 1.15 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.07 1.65 6.41 -51.93 -0.33 1.32 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -32.31 345.73 -8.50 -40.81 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.03 Total: 0.57 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.93 Total: -2.27 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.09 Total: -43.13 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.18 Total: -18.17 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.31 -8.50 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419986326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.346 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds