Wall clock time and date at job start Tue Mar 31 2020 07:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47264 * 2 1 4 4 H 1.09002 * 109.46716 * 55.00469 * 3 2 1 5 5 C 1.52997 * 109.47317 * 295.00560 * 3 2 1 6 6 C 1.52992 * 109.46961 * 175.00098 * 3 2 1 7 7 H 1.09000 * 110.53952 * 305.70671 * 6 3 2 8 8 N 1.47317 * 110.59983 * 68.53727 * 6 3 2 9 9 C 1.34868 * 106.44075 * 118.47485 * 8 6 3 10 10 O 1.21528 * 123.72654 * 180.02562 * 9 8 6 11 11 N 1.33796 * 112.49962 * 0.13891 * 9 8 6 12 12 C 1.46495 * 124.17515 * 179.87557 * 11 9 8 13 13 H 1.09004 * 110.01515 * 180.09823 * 12 11 9 14 14 C 1.53869 * 110.03291 * 301.49212 * 12 11 9 15 15 C 1.54263 * 106.59786 * 119.28663 * 14 12 11 16 16 C 1.54887 * 104.19807 * 23.60896 * 15 14 12 17 17 H 1.09004 * 110.75677 * 80.55790 * 16 15 14 18 18 C 1.50700 * 110.75866 * 203.74371 * 16 15 14 19 19 H 1.07998 * 120.00251 * 118.54699 * 18 16 15 20 20 C 1.37881 * 119.99713 * 298.54949 * 18 16 15 21 21 N 1.31514 * 120.00020 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99881 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47003 * 59.99555 * 22 20 18 24 24 H 1.48498 * 109.47185 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46791 * 299.99701 * 22 20 18 26 26 C 1.54270 * 110.03213 * 58.66151 * 12 11 9 27 27 C 1.34769 * 111.64241 * 359.91053 * 11 9 8 28 28 O 1.21238 * 127.15195 * 180.02562 * 27 11 9 29 29 H 1.08997 * 109.46584 * 299.99168 * 1 2 3 30 30 H 1.08999 * 109.47123 * 59.99430 * 1 2 3 31 31 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46782 * 240.00033 * 2 1 3 33 33 H 1.08997 * 109.47391 * 120.01028 * 2 1 3 34 34 H 1.09002 * 109.47153 * 299.99641 * 5 3 2 35 35 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47261 * 59.99813 * 5 3 2 37 37 H 0.96996 * 126.68497 * 298.47153 * 8 6 3 38 38 H 1.09002 * 110.03100 * 238.57018 * 14 12 11 39 39 H 1.09002 * 110.03548 * 0.02562 * 14 12 11 40 40 H 1.09010 * 110.48767 * 142.28925 * 15 14 12 41 41 H 1.09005 * 110.48810 * 264.92739 * 15 14 12 42 42 H 0.97008 * 119.99597 * 180.02562 * 21 20 18 43 43 H 1.09001 * 110.48438 * 335.77792 * 26 12 11 44 44 H 1.08997 * 110.49013 * 98.42604 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4442 0.1257 7 1 3.8771 0.8733 1.0001 8 7 4.1862 0.9032 -1.0955 9 6 4.9415 1.8946 -1.6109 10 8 5.5966 1.7844 -2.6286 11 7 4.8913 3.0114 -0.8759 12 6 5.6161 4.2427 -1.1994 13 1 5.4115 5.0047 -0.4472 14 6 7.1274 3.9622 -1.2682 15 6 7.5752 4.3096 -2.7030 16 6 6.5071 5.3143 -3.2016 17 1 6.7120 6.3157 -2.8228 18 6 6.4393 5.3186 -4.7071 19 1 5.5245 5.0371 -5.2073 20 6 7.5454 5.6818 -5.4458 21 7 8.6593 6.0250 -4.8367 22 14 7.4617 5.6864 -7.3120 23 1 6.4062 6.6313 -7.7578 24 1 8.7723 6.1121 -7.8653 25 1 7.1396 4.3201 -7.7964 26 6 5.1981 4.7508 -2.5948 27 6 4.0923 2.8634 0.1992 28 8 3.8461 3.6931 1.0483 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5140 0.8898 34 1 2.0698 1.5876 -2.1491 35 1 1.9983 3.1544 -1.3070 36 1 0.5489 2.1253 -1.3968 37 1 4.0732 0.0099 -1.4563 38 1 7.6565 4.5886 -0.5500 39 1 7.3217 2.9098 -1.0613 40 1 8.5611 4.7745 -2.6929 41 1 7.5800 3.4164 -3.3279 42 1 9.4373 6.2809 -5.3565 43 1 4.8190 3.9289 -3.2022 44 1 4.4492 5.5377 -2.5059 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419986326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:39 Heat of formation + Delta-G solvation = -84.753523 kcal Electronic energy + Delta-G solvation = -25140.781494 eV Core-core repulsion = 21671.212955 eV Total energy + Delta-G solvation = -3469.568539 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.57998 -39.71736 -39.13271 -37.82674 -36.46949 -34.95199 -33.66057 -30.77323 -30.10700 -29.19490 -28.18630 -26.18627 -25.13738 -23.97080 -22.34399 -21.26311 -21.09541 -20.25147 -19.10762 -18.32855 -17.96709 -17.25375 -16.64479 -16.56395 -16.45188 -16.00885 -15.74809 -15.53692 -15.22726 -14.97133 -14.67334 -14.28209 -14.05139 -13.80365 -13.16562 -13.12241 -12.98528 -12.88286 -12.80089 -12.59076 -12.46912 -12.33870 -12.26131 -11.90362 -11.71047 -11.47421 -11.44418 -11.37264 -11.29088 -11.00637 -10.81725 -10.61454 -10.45879 -10.30022 -8.10866 -6.19587 0.62555 1.24828 1.39160 1.41803 1.48959 2.04589 2.25717 2.43930 2.98664 3.19293 3.50491 3.70622 3.84508 3.87715 4.00301 4.02466 4.30296 4.31312 4.47030 4.54681 4.59577 4.64456 4.70884 4.72110 4.81497 4.81781 4.98020 5.02523 5.07015 5.08261 5.13027 5.14871 5.26913 5.35557 5.43322 5.50803 5.54397 5.64500 5.88670 5.93251 6.01110 6.18803 6.39025 6.41764 6.86831 7.23551 7.46197 8.97595 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.004185 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.162763 B = 6689.626692 C = 7173.952238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.082 4.082 4 H 0.101 0.899 5 C -0.155 4.155 6 C 0.108 3.892 7 H 0.163 0.837 8 N -0.705 5.705 9 C 0.692 3.308 10 O -0.565 6.565 11 N -0.571 5.571 12 C 0.149 3.851 13 H 0.111 0.889 14 C -0.119 4.119 15 C -0.081 4.081 16 C 0.047 3.953 17 H 0.010 0.990 18 C -0.530 4.530 19 H 0.045 0.955 20 C 0.014 3.986 21 N -0.917 5.917 22 Si 0.951 3.049 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.277 1.277 26 C -0.111 4.111 27 C 0.520 3.480 28 O -0.499 6.499 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.026 0.974 36 H 0.079 0.921 37 H 0.450 0.550 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.026 0.974 42 H 0.260 0.740 43 H 0.053 0.947 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 -14.115 13.796 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.101 4.101 4 H 0.119 0.881 5 C -0.212 4.212 6 C -0.001 4.001 7 H 0.180 0.820 8 N -0.372 5.372 9 C 0.392 3.608 10 O -0.439 6.439 11 N -0.316 5.316 12 C 0.047 3.953 13 H 0.129 0.871 14 C -0.157 4.157 15 C -0.119 4.119 16 C 0.028 3.972 17 H 0.029 0.971 18 C -0.568 4.568 19 H 0.063 0.937 20 C -0.185 4.185 21 N -0.556 5.556 22 Si 0.777 3.223 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.202 1.202 26 C -0.149 4.149 27 C 0.309 3.691 28 O -0.372 6.372 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.098 0.902 37 H 0.297 0.703 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.399 -13.576 13.669 24.052 hybrid contribution 0.418 0.090 -1.492 1.552 sum -13.981 -13.486 12.177 22.926 Atomic orbital electron populations 1.21817 0.95117 1.02258 1.02028 1.21544 0.96604 0.93195 1.03553 1.21418 0.89459 0.99666 0.99583 0.88090 1.21928 1.02860 0.98936 0.97472 1.22372 0.96325 0.90284 0.91075 0.81963 1.45500 1.49081 1.15036 1.27539 1.16188 0.80756 0.81117 0.82694 1.91091 1.45909 1.82066 1.24823 1.46687 1.44953 1.14209 1.25720 1.21982 0.91758 0.83196 0.98317 0.87097 1.22419 0.93678 1.00838 0.98749 1.21946 0.99285 0.97845 0.92854 1.19472 0.90453 0.93290 0.93960 0.97146 1.21362 0.97572 1.45195 0.92672 0.93664 1.25713 0.95186 0.94860 1.02754 1.70065 1.02451 1.46391 1.36680 0.85719 0.77437 0.78430 0.80718 1.19375 1.20571 1.20245 1.22604 0.99137 0.99380 0.93793 1.21484 0.76978 0.91035 0.79598 1.90760 1.59125 1.49491 1.37787 0.92283 0.93026 0.91808 0.91234 0.89444 0.92763 0.95473 0.90186 0.70286 0.90265 0.92361 0.93797 0.95540 0.93065 0.92779 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 71.98 0.70 -0.59 16 2 C -0.11 -0.88 5.28 30.60 0.16 -0.72 16 3 C -0.08 -1.07 2.29 -10.80 -0.02 -1.09 16 4 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.15 -2.81 8.40 71.98 0.60 -2.20 16 6 C 0.11 1.72 3.40 44.37 0.15 1.87 16 7 H 0.16 1.47 8.14 -2.39 -0.02 1.45 16 8 N -0.70 -13.58 5.05 -459.13 -2.32 -15.90 16 9 C 0.69 21.91 7.35 179.33 1.32 23.22 16 10 O -0.56 -23.80 15.43 -3.80 -0.06 -23.86 16 11 N -0.57 -18.10 2.51 -746.45 -1.87 -19.98 16 12 C 0.15 5.59 3.44 45.72 0.16 5.75 16 13 H 0.11 3.86 7.67 -2.38 -0.02 3.84 16 14 C -0.12 -4.75 5.92 31.32 0.19 -4.56 16 15 C -0.08 -4.12 5.51 31.67 0.17 -3.94 16 16 C 0.05 2.50 2.82 -10.25 -0.03 2.47 16 17 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 18 C -0.53 -31.18 8.54 25.60 0.22 -30.96 16 19 H 0.05 2.66 7.78 -2.91 -0.02 2.63 16 20 C 0.01 0.80 5.33 84.66 0.45 1.25 16 21 N -0.92 -55.20 12.02 21.45 0.26 -54.94 16 22 Si 0.95 45.95 29.54 68.60 2.03 47.98 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 25 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 26 C -0.11 -4.92 5.68 31.67 0.18 -4.74 16 27 C 0.52 13.59 6.61 87.94 0.58 14.17 16 28 O -0.50 -15.22 17.53 -2.90 -0.05 -15.27 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.51 6.56 -2.39 -0.02 0.49 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.53 7.75 -2.38 -0.02 0.51 16 33 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.05 1.08 7.45 -2.39 -0.02 1.06 16 35 H 0.03 0.64 7.37 -2.39 -0.02 0.62 16 36 H 0.08 1.21 6.57 -2.38 -0.02 1.20 16 37 H 0.45 6.18 8.65 -92.71 -0.80 5.37 16 38 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.06 2.26 7.24 -2.39 -0.02 2.24 16 40 H 0.04 2.39 7.38 -2.38 -0.02 2.37 16 41 H 0.03 1.47 7.80 -2.38 -0.02 1.45 16 42 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 43 H 0.05 2.58 6.41 -2.39 -0.02 2.57 16 44 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -73.47 345.73 3.01 -70.47 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.20 Total: 11.58 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 4.83 Total: -0.08 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -3.94 Total: -90.82 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -0.11 Total: -39.14 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -73.47 3.01 -70.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419986326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.285 kcal (2) G-P(sol) polarization free energy of solvation -73.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds