Wall clock time and date at job start Tue Mar 31 2020 07:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 H 1.08997 * 109.47254 * 304.99906 * 3 2 1 5 5 C 1.52998 * 109.47218 * 65.00197 * 3 2 1 6 6 C 1.53006 * 109.47060 * 185.00048 * 3 2 1 7 7 H 1.09001 * 110.65722 * 298.54496 * 6 3 2 8 8 N 1.47316 * 110.59765 * 61.45256 * 6 3 2 9 9 C 1.34530 * 106.61941 * 118.52775 * 8 6 3 10 10 O 1.21539 * 123.77103 * 179.97438 * 9 8 6 11 11 N 1.33794 * 112.45342 * 359.97438 * 9 8 6 12 12 C 1.46506 * 124.17371 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.01406 * 180.08482 * 12 11 9 14 14 C 1.53874 * 110.03311 * 301.48055 * 12 11 9 15 15 C 1.54261 * 106.60198 * 119.28486 * 14 12 11 16 16 C 1.54894 * 104.19373 * 23.60630 * 15 14 12 17 17 H 1.08998 * 110.75116 * 80.55784 * 16 15 14 18 18 C 1.50702 * 110.75426 * 203.74170 * 16 15 14 19 19 H 1.08007 * 119.99849 * 118.54957 * 18 16 15 20 20 C 1.37873 * 120.00430 * 298.54840 * 18 16 15 21 21 N 1.31509 * 120.00380 * 180.02562 * 20 18 16 22 22 Si 1.86805 * 119.99941 * 0.02562 * 20 18 16 23 23 H 1.48500 * 109.47174 * 89.99576 * 22 20 18 24 24 H 1.48495 * 109.47200 * 209.99854 * 22 20 18 25 25 H 1.48506 * 109.46941 * 330.00360 * 22 20 18 26 26 C 1.54269 * 110.03195 * 58.64521 * 12 11 9 27 27 C 1.34760 * 111.64866 * 359.97438 * 11 9 8 28 28 O 1.21237 * 127.16264 * 180.02562 * 27 11 9 29 29 H 1.09006 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46861 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.47185 * 60.00027 * 1 2 3 32 32 H 1.09003 * 109.46622 * 239.99769 * 2 1 3 33 33 H 1.09005 * 109.47202 * 120.00329 * 2 1 3 34 34 H 1.09006 * 109.47081 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47139 * 299.99619 * 5 3 2 36 36 H 1.09006 * 109.47102 * 59.99995 * 5 3 2 37 37 H 0.96998 * 126.68952 * 298.26570 * 8 6 3 38 38 H 1.09000 * 110.02667 * 238.57092 * 14 12 11 39 39 H 1.08999 * 110.03234 * 359.94869 * 14 12 11 40 40 H 1.08993 * 110.49059 * 142.28827 * 15 14 12 41 41 H 1.09005 * 110.48335 * 264.93131 * 15 14 12 42 42 H 0.97000 * 120.00268 * 180.02562 * 21 20 18 43 43 H 1.08996 * 110.48507 * 335.78351 * 26 12 11 44 44 H 1.08993 * 110.48697 * 98.42345 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 1 4.0212 0.9315 0.7210 8 7 3.9811 0.8213 -1.3942 9 6 4.6366 1.7675 -2.0906 10 8 5.1171 1.5846 -3.1919 11 7 4.7004 2.9322 -1.4353 12 6 5.3553 4.1347 -1.9563 13 1 5.2716 4.9474 -1.2347 14 6 6.8369 3.8422 -2.2514 15 6 7.0427 4.0880 -3.7603 16 6 5.9014 5.0619 -4.1456 17 1 6.1594 6.0856 -3.8747 18 6 5.5891 4.9633 -5.6166 19 1 4.6066 4.6530 -5.9404 20 6 6.5575 5.2693 -6.5490 21 7 6.2848 5.1838 -7.8327 22 14 8.2571 5.8054 -5.9889 23 1 9.1288 4.6122 -5.8410 24 1 8.8433 6.7248 -6.9970 25 1 8.1502 6.5051 -4.6834 26 6 4.7124 4.5481 -3.2963 27 6 4.0879 2.8626 -0.2370 28 8 3.9786 3.7497 0.5822 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.9991 3.1541 1.3075 35 1 0.5490 2.1252 1.3969 36 1 2.0700 1.5874 2.1492 37 1 3.8179 -0.0937 -1.6714 38 1 7.4722 4.5135 -1.6736 39 1 7.0689 2.8058 -2.0061 40 1 8.0140 4.5474 -3.9430 41 1 6.9508 3.1542 -4.3149 42 1 6.9663 5.3987 -8.4887 43 1 4.2442 3.6886 -3.7760 44 1 3.9833 5.3431 -3.1404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419986328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:43 Heat of formation + Delta-G solvation = -57.901300 kcal Electronic energy + Delta-G solvation = -25026.321980 eV Core-core repulsion = 21557.917841 eV Total energy + Delta-G solvation = -3468.404139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.46223 -38.62425 -37.89747 -36.70982 -35.49222 -33.53174 -32.03379 -30.39950 -28.65900 -27.95442 -26.92625 -24.66216 -23.85718 -22.74538 -21.29683 -20.56830 -19.41031 -19.17510 -18.02739 -16.89562 -16.63363 -16.36399 -15.51701 -15.25145 -15.23684 -14.87434 -14.51601 -14.22137 -14.04130 -13.82252 -13.37965 -12.87101 -12.80233 -12.60728 -12.46516 -12.24611 -12.02278 -11.82613 -11.56609 -11.42546 -11.15920 -11.02546 -10.96740 -10.54956 -10.34462 -10.10860 -9.94975 -9.79636 -9.73668 -9.58053 -9.42009 -9.10329 -8.92650 -8.44947 -5.97883 -3.95614 1.66941 2.35265 3.12270 3.21004 3.36369 3.43602 3.45474 3.91512 4.24377 4.42443 4.50195 4.66269 4.79255 5.04035 5.06495 5.19343 5.21883 5.24480 5.32777 5.37475 5.42527 5.54716 5.61452 5.63701 5.69485 5.71731 5.78324 5.97014 6.07040 6.10519 6.25668 6.30293 6.38824 6.49541 6.71310 6.82566 6.87913 7.03281 7.16652 7.28239 7.45697 7.63653 7.85798 8.33124 8.62541 9.06043 9.64898 11.15818 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027715 B = 0.004113 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.029890 B = 6806.075336 C = 7136.932137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.089 4.089 4 H 0.082 0.918 5 C -0.156 4.156 6 C 0.097 3.903 7 H 0.122 0.878 8 N -0.732 5.732 9 C 0.693 3.307 10 O -0.510 6.510 11 N -0.565 5.565 12 C 0.139 3.861 13 H 0.101 0.899 14 C -0.126 4.126 15 C -0.124 4.124 16 C 0.019 3.981 17 H 0.033 0.967 18 C -0.502 4.502 19 H 0.073 0.927 20 C 0.070 3.930 21 N -0.904 5.904 22 Si 0.882 3.118 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.265 1.265 26 C -0.113 4.113 27 C 0.523 3.477 28 O -0.474 6.474 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.436 0.564 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.077 0.923 42 H 0.262 0.738 43 H 0.078 0.922 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.074 -10.495 20.111 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.109 4.109 4 H 0.100 0.900 5 C -0.214 4.214 6 C -0.013 4.013 7 H 0.139 0.861 8 N -0.398 5.398 9 C 0.394 3.606 10 O -0.381 6.381 11 N -0.311 5.311 12 C 0.039 3.961 13 H 0.119 0.881 14 C -0.164 4.164 15 C -0.162 4.162 16 C 0.000 4.000 17 H 0.051 0.949 18 C -0.540 4.540 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.543 5.543 22 Si 0.711 3.289 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.190 1.190 26 C -0.151 4.151 27 C 0.310 3.690 28 O -0.345 6.345 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.280 0.720 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.722 -9.968 19.717 23.404 hybrid contribution 0.936 -0.256 0.093 0.975 sum -6.786 -10.224 19.810 23.303 Atomic orbital electron populations 1.21804 0.95189 1.01810 1.02273 1.21549 0.96641 0.95035 1.02229 1.21359 0.90921 0.98084 1.00536 0.89957 1.21969 1.01835 1.02072 0.95500 1.22137 0.97613 0.92000 0.89506 0.86103 1.45630 1.60690 1.14353 1.19139 1.15976 0.79785 0.80545 0.84305 1.91130 1.49305 1.80677 1.16944 1.46734 1.52199 1.13549 1.18586 1.22300 0.93134 0.82883 0.97793 0.88069 1.22447 0.93506 1.00855 0.99629 1.22778 0.99094 1.01990 0.92348 1.20022 0.90170 0.93909 0.95916 0.94887 1.20931 1.00076 1.45141 0.87860 0.90927 1.24970 0.98474 0.94913 0.94735 1.69901 1.34355 1.49631 1.00384 0.86906 0.85153 0.78653 0.78145 1.20452 1.22370 1.19013 1.22670 0.99295 1.00936 0.92204 1.20803 0.77052 0.89881 0.81299 1.90748 1.55908 1.44110 1.43748 0.92587 0.92253 0.92506 0.91742 0.91466 0.90709 0.91721 0.92258 0.71984 0.91858 0.92169 0.93719 0.90404 0.92807 0.90365 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.12 -0.71 5.33 -26.73 -0.14 -0.85 16 3 C -0.09 -0.71 2.17 -90.62 -0.20 -0.91 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.16 -1.20 8.71 37.16 0.32 -0.87 16 6 C 0.10 0.90 3.21 -68.20 -0.22 0.68 16 7 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 8 N -0.73 -7.72 5.86 -59.18 -0.35 -8.07 16 9 C 0.69 10.89 7.47 -88.01 -0.66 10.23 16 10 O -0.51 -10.31 15.44 5.33 0.08 -10.22 16 11 N -0.57 -8.76 2.51 -112.39 -0.28 -9.04 16 12 C 0.14 2.45 3.44 -66.81 -0.23 2.22 16 13 H 0.10 1.64 7.67 -51.93 -0.40 1.25 16 14 C -0.13 -2.30 5.92 -25.62 -0.15 -2.45 16 15 C -0.12 -2.79 5.02 -25.07 -0.13 -2.91 16 16 C 0.02 0.46 2.30 -89.78 -0.21 0.25 16 17 H 0.03 0.79 7.37 -51.93 -0.38 0.41 16 18 C -0.50 -14.53 9.12 -34.44 -0.31 -14.84 16 19 H 0.07 2.29 8.03 -52.48 -0.42 1.87 16 20 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 21 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 22 Si 0.88 22.39 24.46 -169.99 -4.16 18.23 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.27 -6.36 6.48 56.52 0.37 -6.00 16 26 C -0.11 -2.33 5.68 -25.07 -0.14 -2.48 16 27 C 0.52 6.93 7.44 -10.56 -0.08 6.85 16 28 O -0.47 -7.07 15.59 5.59 0.09 -6.98 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 6.57 -51.93 -0.34 -0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 7.01 -51.93 -0.36 0.02 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.74 6.09 -51.93 -0.32 0.43 16 35 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.44 3.53 8.14 -40.82 -0.33 3.20 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.07 7.24 -51.93 -0.38 0.69 16 40 H 0.04 1.00 4.90 -51.93 -0.25 0.75 16 41 H 0.08 1.92 7.80 -51.93 -0.40 1.52 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.08 1.77 6.41 -51.93 -0.33 1.44 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -33.69 336.66 -7.47 -41.16 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.82 Total: 1.17 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.88 Total: -3.67 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.14 Total: -44.76 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.17 Total: -17.20 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.16 Total: 18.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.69 -7.47 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419986328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.743 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds