Wall clock time and date at job start Tue Mar 31 2020 07:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 H 1.08997 * 109.47254 * 304.99906 * 3 2 1 5 5 C 1.52998 * 109.47218 * 65.00197 * 3 2 1 6 6 C 1.53006 * 109.47060 * 185.00048 * 3 2 1 7 7 H 1.09001 * 110.65722 * 298.54496 * 6 3 2 8 8 N 1.47316 * 110.59765 * 61.45256 * 6 3 2 9 9 C 1.34530 * 106.61941 * 118.52775 * 8 6 3 10 10 O 1.21539 * 123.77103 * 179.97438 * 9 8 6 11 11 N 1.33794 * 112.45342 * 359.97438 * 9 8 6 12 12 C 1.46506 * 124.17371 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.01406 * 180.08482 * 12 11 9 14 14 C 1.53874 * 110.03311 * 301.48055 * 12 11 9 15 15 C 1.54261 * 106.60198 * 119.28486 * 14 12 11 16 16 C 1.54894 * 104.19373 * 23.60630 * 15 14 12 17 17 H 1.08998 * 110.75116 * 80.55784 * 16 15 14 18 18 C 1.50702 * 110.75426 * 203.74170 * 16 15 14 19 19 H 1.08007 * 119.99849 * 118.54957 * 18 16 15 20 20 C 1.37873 * 120.00430 * 298.54840 * 18 16 15 21 21 N 1.31509 * 120.00380 * 180.02562 * 20 18 16 22 22 Si 1.86805 * 119.99941 * 0.02562 * 20 18 16 23 23 H 1.48500 * 109.47174 * 89.99576 * 22 20 18 24 24 H 1.48495 * 109.47200 * 209.99854 * 22 20 18 25 25 H 1.48506 * 109.46941 * 330.00360 * 22 20 18 26 26 C 1.54269 * 110.03195 * 58.64521 * 12 11 9 27 27 C 1.34760 * 111.64866 * 359.97438 * 11 9 8 28 28 O 1.21237 * 127.16264 * 180.02562 * 27 11 9 29 29 H 1.09006 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46861 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.47185 * 60.00027 * 1 2 3 32 32 H 1.09003 * 109.46622 * 239.99769 * 2 1 3 33 33 H 1.09005 * 109.47202 * 120.00329 * 2 1 3 34 34 H 1.09006 * 109.47081 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47139 * 299.99619 * 5 3 2 36 36 H 1.09006 * 109.47102 * 59.99995 * 5 3 2 37 37 H 0.96998 * 126.68952 * 298.26570 * 8 6 3 38 38 H 1.09000 * 110.02667 * 238.57092 * 14 12 11 39 39 H 1.08999 * 110.03234 * 359.94869 * 14 12 11 40 40 H 1.08993 * 110.49059 * 142.28827 * 15 14 12 41 41 H 1.09005 * 110.48335 * 264.93131 * 15 14 12 42 42 H 0.97000 * 120.00268 * 180.02562 * 21 20 18 43 43 H 1.08996 * 110.48507 * 335.78351 * 26 12 11 44 44 H 1.08993 * 110.48697 * 98.42345 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4443 -0.1257 7 1 4.0212 0.9315 0.7210 8 7 3.9811 0.8213 -1.3942 9 6 4.6366 1.7675 -2.0906 10 8 5.1171 1.5846 -3.1919 11 7 4.7004 2.9322 -1.4353 12 6 5.3553 4.1347 -1.9563 13 1 5.2716 4.9474 -1.2347 14 6 6.8369 3.8422 -2.2514 15 6 7.0427 4.0880 -3.7603 16 6 5.9014 5.0619 -4.1456 17 1 6.1594 6.0856 -3.8747 18 6 5.5891 4.9633 -5.6166 19 1 4.6066 4.6530 -5.9404 20 6 6.5575 5.2693 -6.5490 21 7 6.2848 5.1838 -7.8327 22 14 8.2571 5.8054 -5.9889 23 1 9.1288 4.6122 -5.8410 24 1 8.8433 6.7248 -6.9970 25 1 8.1502 6.5051 -4.6834 26 6 4.7124 4.5481 -3.2963 27 6 4.0879 2.8626 -0.2370 28 8 3.9786 3.7497 0.5822 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.9991 3.1541 1.3075 35 1 0.5490 2.1252 1.3969 36 1 2.0700 1.5874 2.1492 37 1 3.8179 -0.0937 -1.6714 38 1 7.4722 4.5135 -1.6736 39 1 7.0689 2.8058 -2.0061 40 1 8.0140 4.5474 -3.9430 41 1 6.9508 3.1542 -4.3149 42 1 6.9663 5.3987 -8.4887 43 1 4.2442 3.6886 -3.7760 44 1 3.9833 5.3431 -3.1404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419986328.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:42 Heat of formation + Delta-G solvation = -81.761484 kcal Electronic energy + Delta-G solvation = -25027.356635 eV Core-core repulsion = 21557.917841 eV Total energy + Delta-G solvation = -3469.438794 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.57780 -39.81492 -39.21784 -37.81670 -36.62509 -34.99862 -33.90327 -31.01647 -30.44477 -29.53041 -27.77198 -26.03952 -25.09804 -23.98107 -22.44860 -21.30682 -21.20893 -20.54494 -19.23350 -18.61105 -17.90834 -17.45992 -16.85179 -16.53578 -16.46580 -16.05216 -15.89612 -15.45057 -15.14801 -14.84989 -14.71916 -14.38468 -14.16440 -14.01495 -13.52203 -13.39307 -12.95505 -12.91766 -12.73299 -12.61964 -12.45960 -12.29038 -12.04569 -11.80237 -11.73930 -11.57395 -11.49814 -11.46838 -11.34567 -11.06237 -10.92567 -10.70778 -10.62717 -10.35887 -8.28019 -6.31106 0.60520 1.21814 1.33340 1.36300 1.47209 2.00443 2.21562 2.35410 2.95550 3.07261 3.51041 3.63832 3.72839 3.82792 3.92324 4.06057 4.22551 4.26480 4.40203 4.50977 4.56634 4.61272 4.65388 4.67582 4.69083 4.83770 4.84853 4.88679 4.97231 5.08307 5.09736 5.15198 5.22295 5.24133 5.33415 5.39034 5.46025 5.55649 5.62434 5.77467 5.89634 6.14287 6.32412 6.39966 6.73263 7.19130 7.33078 8.89713 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.027715 B = 0.004113 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.029890 B = 6806.075336 C = 7136.932137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.085 4.085 4 H 0.061 0.939 5 C -0.153 4.153 6 C 0.107 3.893 7 H 0.162 0.838 8 N -0.708 5.708 9 C 0.689 3.311 10 O -0.566 6.566 11 N -0.573 5.573 12 C 0.147 3.853 13 H 0.123 0.877 14 C -0.116 4.116 15 C -0.121 4.121 16 C 0.013 3.987 17 H 0.044 0.956 18 C -0.511 4.511 19 H 0.023 0.977 20 C 0.008 3.992 21 N -0.955 5.955 22 Si 0.948 3.052 23 H -0.270 1.270 24 H -0.294 1.294 25 H -0.235 1.235 26 C -0.108 4.108 27 C 0.520 3.480 28 O -0.488 6.488 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.449 0.551 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.048 0.952 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.357 -11.194 24.017 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.105 4.105 4 H 0.079 0.921 5 C -0.210 4.210 6 C -0.001 4.001 7 H 0.179 0.821 8 N -0.374 5.374 9 C 0.390 3.610 10 O -0.440 6.440 11 N -0.318 5.318 12 C 0.045 3.955 13 H 0.141 0.859 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.006 4.006 17 H 0.062 0.938 18 C -0.549 4.549 19 H 0.041 0.959 20 C -0.188 4.188 21 N -0.596 5.596 22 Si 0.773 3.227 23 H -0.196 1.196 24 H -0.222 1.222 25 H -0.158 1.158 26 C -0.146 4.146 27 C 0.309 3.691 28 O -0.359 6.359 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.296 0.704 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.056 -10.702 23.695 26.940 hybrid contribution 0.530 -0.074 -1.146 1.264 sum -6.527 -10.776 22.549 25.830 Atomic orbital electron populations 1.21816 0.95214 1.02270 1.01922 1.21549 0.96575 0.93492 1.03410 1.21353 0.89526 0.99452 1.00124 0.92056 1.21937 1.02566 1.00767 0.95739 1.22371 0.98599 0.89423 0.89660 0.82128 1.45526 1.58816 1.14129 1.18925 1.16175 0.79797 0.81254 0.83822 1.91107 1.51922 1.81607 1.19387 1.46702 1.52650 1.12942 1.19535 1.22057 0.92514 0.84516 0.96365 0.85916 1.22379 0.94463 1.02053 0.96544 1.22574 0.98275 0.99719 0.95289 1.19996 0.92569 0.95019 0.93048 0.93802 1.21237 0.98138 1.44336 0.91171 0.95854 1.25923 1.03256 0.95048 0.94568 1.70067 1.36081 1.51495 1.01964 0.85842 0.79223 0.78660 0.78974 1.19614 1.22151 1.15835 1.22495 0.98417 1.00007 0.93672 1.21384 0.76258 0.91328 0.80124 1.90750 1.56171 1.45090 1.43908 0.91741 0.91705 0.93830 0.91547 0.89281 0.93055 0.90796 0.90372 0.70368 0.88612 0.91721 0.93291 0.93800 0.92659 0.93283 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 71.98 0.70 -0.78 16 2 C -0.11 -0.99 5.33 30.59 0.16 -0.83 16 3 C -0.08 -1.13 2.17 -10.79 -0.02 -1.15 16 4 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 5 C -0.15 -1.89 8.71 71.98 0.63 -1.27 16 6 C 0.11 1.65 3.21 44.37 0.14 1.80 16 7 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 8 N -0.71 -13.49 5.86 -459.58 -2.69 -16.18 16 9 C 0.69 21.23 7.47 179.44 1.34 22.57 16 10 O -0.57 -23.50 15.44 -3.84 -0.06 -23.56 16 11 N -0.57 -16.97 2.51 -746.74 -1.88 -18.84 16 12 C 0.15 4.93 3.44 45.72 0.16 5.09 16 13 H 0.12 3.62 7.67 -2.39 -0.02 3.60 16 14 C -0.12 -3.98 5.92 31.32 0.19 -3.79 16 15 C -0.12 -5.34 5.02 31.67 0.16 -5.18 16 16 C 0.01 0.62 2.30 -10.25 -0.02 0.59 16 17 H 0.04 2.04 7.37 -2.39 -0.02 2.02 16 18 C -0.51 -30.97 9.12 25.60 0.23 -30.74 16 19 H 0.02 1.58 8.03 -2.91 -0.02 1.56 16 20 C 0.01 0.50 5.46 84.65 0.46 0.96 16 21 N -0.96 -62.70 13.96 21.45 0.30 -62.40 16 22 Si 0.95 46.32 24.46 68.60 1.68 47.99 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.24 -10.28 6.48 99.48 0.64 -9.64 16 26 C -0.11 -4.52 5.68 31.67 0.18 -4.34 16 27 C 0.52 12.54 7.44 87.94 0.65 13.20 16 28 O -0.49 -13.32 15.59 -2.90 -0.05 -13.36 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.55 6.57 -2.39 -0.02 0.53 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.58 7.01 -2.39 -0.02 0.56 16 33 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.05 0.91 6.09 -2.38 -0.01 0.89 16 35 H 0.07 0.79 6.56 -2.39 -0.02 0.77 16 36 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.45 6.26 8.14 -92.71 -0.75 5.51 16 38 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.06 2.17 7.24 -2.39 -0.02 2.15 16 40 H 0.05 2.09 4.90 -2.39 -0.01 2.08 16 41 H 0.04 2.22 7.80 -2.38 -0.02 2.20 16 42 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 43 H 0.05 2.33 6.41 -2.39 -0.02 2.32 16 44 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -78.46 336.66 2.45 -76.01 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.19 Total: 14.22 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 4.95 Total: -3.87 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -4.27 Total: -97.43 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.10 Total: -36.92 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.68 Total: 47.99 kcal Total: -78.46 2.45 -76.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419986328.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.753 kcal (2) G-P(sol) polarization free energy of solvation -78.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds