Wall clock time and date at job start Tue Mar 31 2020 07:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46618 * 2 1 4 4 C 1.50698 * 109.47236 * 240.00080 * 2 1 3 5 5 H 1.07997 * 119.99894 * 241.19080 * 4 2 1 6 6 C 1.37879 * 120.00192 * 61.19429 * 4 2 1 7 7 N 1.31516 * 120.00301 * 194.18637 * 6 4 2 8 8 Si 1.86808 * 119.99778 * 14.18551 * 6 4 2 9 9 H 1.48492 * 109.47081 * 84.54344 * 8 6 4 10 10 H 1.48500 * 109.46900 * 204.54044 * 8 6 4 11 11 H 1.48496 * 109.47115 * 324.53616 * 8 6 4 12 12 C 1.52999 * 109.47288 * 119.99707 * 2 1 3 13 13 N 1.46502 * 109.46999 * 300.00492 * 12 2 1 14 14 C 1.34771 * 124.17361 * 270.03533 * 13 12 2 15 15 O 1.21232 * 127.15833 * 0.02562 * 14 13 12 16 16 C 1.51584 * 105.67834 * 179.74943 * 14 13 12 17 17 N 1.47308 * 103.59575 * 0.33413 * 16 14 13 18 18 C 1.46503 * 126.68930 * 179.97438 * 17 16 14 19 19 C 1.54261 * 110.03465 * 236.87860 * 18 17 16 20 20 C 1.54885 * 104.19711 * 217.10829 * 19 18 17 21 21 C 1.54891 * 102.74959 * 37.94099 * 20 19 18 22 22 C 1.53875 * 110.02942 * 119.71141 * 18 17 16 23 23 C 1.33790 * 124.17699 * 90.00256 * 13 12 2 24 24 O 1.21531 * 123.77403 * 0.03098 * 23 13 12 25 25 H 1.09000 * 109.47813 * 309.48675 * 1 2 3 26 26 H 1.09001 * 109.47281 * 69.48920 * 1 2 3 27 27 H 1.09001 * 109.47211 * 189.48621 * 1 2 3 28 28 H 1.09001 * 109.47250 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47190 * 299.99478 * 3 2 1 30 30 H 1.09002 * 109.47281 * 60.00281 * 3 2 1 31 31 H 0.96994 * 119.99813 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47206 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.46838 * 60.00078 * 12 2 1 34 34 H 1.09004 * 110.68597 * 241.76064 * 16 14 13 35 35 H 1.09006 * 110.50732 * 118.82291 * 16 14 13 36 36 H 1.09003 * 110.05613 * 358.30215 * 18 17 16 37 37 H 1.08999 * 110.48644 * 335.78616 * 19 18 17 38 38 H 1.08997 * 110.48790 * 98.42899 * 19 18 17 39 39 H 1.09003 * 110.75479 * 279.62620 * 20 19 18 40 40 H 1.09002 * 110.91635 * 156.33002 * 20 19 18 41 41 H 1.09007 * 110.48372 * 203.38126 * 21 20 19 42 42 H 1.08994 * 110.59670 * 80.79400 * 21 20 19 43 43 H 1.09002 * 110.03221 * 238.57070 * 22 18 17 44 44 H 1.09000 * 110.03434 * 359.94861 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6373 -1.5995 -1.1315 6 6 1.7197 -0.2251 -2.4826 7 7 1.9096 -0.9764 -3.5453 8 14 1.0264 1.4994 -2.6696 9 1 2.1415 2.4790 -2.7139 10 1 0.2429 1.5840 -3.9283 11 1 0.1436 1.8059 -1.5156 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 2.2092 0.9706 3.0631 15 8 3.2758 1.4516 2.7456 16 6 1.3345 1.3747 4.2333 17 7 0.1810 0.4638 4.1341 18 6 -0.9791 0.4201 5.0277 19 6 -1.1298 -0.9923 5.6294 20 6 -2.6609 -1.2187 5.6883 21 6 -3.1554 -0.5535 4.3799 22 6 -2.2671 0.6991 4.2332 23 6 0.3973 -0.3154 3.0591 24 8 -0.3699 -1.1813 2.6869 25 1 -0.3635 0.6535 0.7931 26 1 -0.3634 0.3601 -0.9625 27 1 -0.3634 -1.0136 0.1694 28 1 3.1299 1.4427 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6893 -0.6351 -4.4261 32 1 3.1300 -0.7208 1.2495 33 1 1.6767 -1.7488 1.2493 34 1 1.0139 2.4118 4.1343 35 1 1.8626 1.2237 5.1748 36 1 -0.8653 1.1553 5.8243 37 1 -0.6590 -1.7340 4.9842 38 1 -0.7000 -1.0283 6.6304 39 1 -3.0912 -0.7247 6.5595 40 1 -2.8969 -2.2829 5.6938 41 1 -4.2040 -0.2693 4.4692 42 1 -3.0136 -1.2233 3.5318 43 1 -2.7782 1.5697 4.6444 44 1 -2.0288 0.8680 3.1830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420080687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:41 Heat of formation + Delta-G solvation = -27.447376 kcal Electronic energy + Delta-G solvation = -25782.035051 eV Core-core repulsion = 22314.951493 eV Total energy + Delta-G solvation = -3467.083558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16892 -38.85421 -37.66320 -36.40888 -35.71544 -33.54108 -31.58091 -29.19112 -28.84157 -26.81335 -26.36427 -26.10389 -24.80632 -22.39006 -21.57103 -20.77034 -19.51822 -18.76011 -17.25472 -16.78637 -16.31494 -16.12176 -15.94477 -15.26639 -15.11648 -14.76651 -14.17321 -14.02704 -13.80464 -13.54512 -13.31167 -13.11109 -12.75611 -12.66280 -12.11871 -12.01848 -11.87077 -11.75678 -11.23629 -11.20878 -11.17191 -10.98017 -10.95249 -10.62830 -10.53140 -10.13335 -10.08587 -9.87455 -9.73692 -9.36406 -9.05644 -8.87995 -8.49545 -8.38426 -6.11078 -4.07628 1.91395 2.32992 3.17027 3.30548 3.36534 3.39091 3.43084 4.18665 4.39064 4.41473 4.45355 4.72944 4.93143 4.99811 5.07263 5.21157 5.28736 5.36096 5.38804 5.54617 5.55710 5.69378 5.77617 5.84833 5.87310 5.96313 6.02531 6.08841 6.16177 6.28576 6.32804 6.45565 6.50991 6.60592 6.69115 6.73703 6.78396 7.07112 7.25127 7.46749 7.57821 7.66948 7.79244 8.42043 8.47787 8.91811 9.53892 11.01855 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020582 B = 0.005399 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.098424 B = 5184.711743 C = 5761.533536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.026 3.974 3 C -0.140 4.140 4 C -0.511 4.511 5 H 0.077 0.923 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.884 3.116 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.251 1.251 12 C 0.139 3.861 13 N -0.568 5.568 14 C 0.517 3.483 15 O -0.471 6.471 16 C 0.060 3.940 17 N -0.631 5.631 18 C 0.181 3.819 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.136 4.136 23 C 0.699 3.301 24 O -0.527 6.527 25 H 0.013 0.987 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.021 0.979 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 4.529 21.058 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.025 3.975 3 C -0.197 4.197 4 C -0.549 4.549 5 H 0.095 0.905 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.177 1.177 12 C 0.020 3.980 13 N -0.312 5.312 14 C 0.304 3.696 15 O -0.342 6.342 16 C -0.066 4.066 17 N -0.371 5.371 18 C 0.079 3.921 19 C -0.175 4.175 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.174 4.174 23 C 0.402 3.598 24 O -0.400 6.400 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.971 4.227 20.479 22.042 hybrid contribution -0.232 1.152 -0.315 1.217 sum -7.203 5.379 20.164 22.077 Atomic orbital electron populations 1.22207 0.97255 1.00265 0.99110 1.18836 0.92991 0.92334 0.93376 1.22315 1.01182 0.98120 0.98053 1.20645 1.33994 1.12299 0.87944 0.90544 1.24915 0.94535 0.97189 0.95768 1.69946 1.48279 1.35827 0.98736 0.87314 0.79391 0.85757 0.75894 1.21333 1.23389 1.17681 1.21990 0.99303 0.96257 0.80446 1.46677 1.20593 1.35073 1.28890 1.20727 0.85587 0.79382 0.83895 1.90802 1.19764 1.55472 1.68119 1.22484 0.87480 0.96973 0.99689 1.47880 1.21998 1.37484 1.29780 1.21556 0.82513 0.98166 0.89839 1.22778 0.97268 0.96775 1.00728 1.22398 0.94673 1.00906 0.97690 1.22293 0.98255 0.96867 0.98361 1.22538 0.94940 0.98471 1.01473 1.15867 0.81752 0.82235 0.79960 1.90951 1.47733 1.33461 1.67849 0.96770 0.93117 0.92696 0.92552 0.94317 0.95990 0.92589 0.89507 0.89175 0.86813 0.86787 0.88563 0.89796 0.91427 0.91679 0.91336 0.91948 0.90489 0.91294 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 6.51 37.16 0.24 -2.79 16 2 C 0.03 0.61 0.57 -155.66 -0.09 0.53 16 3 C -0.14 -3.19 6.70 37.16 0.25 -2.94 16 4 C -0.51 -14.12 8.62 -34.44 -0.30 -14.42 16 5 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 6 C 0.08 2.26 5.32 -17.82 -0.09 2.16 16 7 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 8 Si 0.88 22.37 22.79 -169.99 -3.87 18.50 16 9 H -0.29 -7.20 7.10 56.52 0.40 -6.80 16 10 H -0.31 -7.80 7.11 56.52 0.40 -7.39 16 11 H -0.25 -6.00 4.65 56.52 0.26 -5.74 16 12 C 0.14 2.83 4.66 -4.04 -0.02 2.82 16 13 N -0.57 -9.90 2.16 -120.73 -0.26 -10.16 16 14 C 0.52 8.03 6.66 -10.55 -0.07 7.96 16 15 O -0.47 -8.54 16.86 5.60 0.09 -8.45 16 16 C 0.06 0.63 7.65 -4.32 -0.03 0.59 16 17 N -0.63 -7.68 2.87 -171.11 -0.49 -8.17 16 18 C 0.18 1.74 3.65 -66.81 -0.24 1.50 16 19 C -0.14 -1.32 6.33 -25.08 -0.16 -1.48 16 20 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 21 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 22 C -0.14 -1.41 6.13 -25.61 -0.16 -1.57 16 23 C 0.70 11.48 5.85 -88.02 -0.52 10.96 16 24 O -0.53 -10.01 14.30 5.34 0.08 -9.93 16 25 H 0.01 0.29 6.97 -51.93 -0.36 -0.07 16 26 H 0.05 1.23 4.30 -51.93 -0.22 1.01 16 27 H 0.05 1.29 7.56 -51.93 -0.39 0.90 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.04 0.92 2.26 -51.93 -0.12 0.81 16 30 H 0.02 0.45 6.19 -51.93 -0.32 0.13 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.09 1.75 8.00 -51.93 -0.42 1.33 16 33 H 0.09 1.86 7.86 -51.93 -0.41 1.45 16 34 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.64 8.13 -51.93 -0.42 0.22 16 37 H 0.08 1.07 6.57 -51.93 -0.34 0.72 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.01 7.46 -51.93 -0.39 0.63 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -32.54 329.08 -7.14 -39.68 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.89 Total: -0.71 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.53 Total: 0.71 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.02 Total: -44.75 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -3.87 Total: 18.50 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.54 -7.14 -39.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420080687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.233 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds