Wall clock time and date at job start Tue Mar 31 2020 07:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46618 * 2 1 4 4 C 1.50698 * 109.47236 * 240.00080 * 2 1 3 5 5 H 1.07997 * 119.99894 * 241.19080 * 4 2 1 6 6 C 1.37879 * 120.00192 * 61.19429 * 4 2 1 7 7 N 1.31516 * 120.00301 * 194.18637 * 6 4 2 8 8 Si 1.86808 * 119.99778 * 14.18551 * 6 4 2 9 9 H 1.48492 * 109.47081 * 84.54344 * 8 6 4 10 10 H 1.48500 * 109.46900 * 204.54044 * 8 6 4 11 11 H 1.48496 * 109.47115 * 324.53616 * 8 6 4 12 12 C 1.52999 * 109.47288 * 119.99707 * 2 1 3 13 13 N 1.46502 * 109.46999 * 300.00492 * 12 2 1 14 14 C 1.34771 * 124.17361 * 270.03533 * 13 12 2 15 15 O 1.21232 * 127.15833 * 0.02562 * 14 13 12 16 16 C 1.51584 * 105.67834 * 179.74943 * 14 13 12 17 17 N 1.47308 * 103.59575 * 0.33413 * 16 14 13 18 18 C 1.46503 * 126.68930 * 179.97438 * 17 16 14 19 19 C 1.54261 * 110.03465 * 236.87860 * 18 17 16 20 20 C 1.54885 * 104.19711 * 217.10829 * 19 18 17 21 21 C 1.54891 * 102.74959 * 37.94099 * 20 19 18 22 22 C 1.53875 * 110.02942 * 119.71141 * 18 17 16 23 23 C 1.33790 * 124.17699 * 90.00256 * 13 12 2 24 24 O 1.21531 * 123.77403 * 0.03098 * 23 13 12 25 25 H 1.09000 * 109.47813 * 309.48675 * 1 2 3 26 26 H 1.09001 * 109.47281 * 69.48920 * 1 2 3 27 27 H 1.09001 * 109.47211 * 189.48621 * 1 2 3 28 28 H 1.09001 * 109.47250 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47190 * 299.99478 * 3 2 1 30 30 H 1.09002 * 109.47281 * 60.00281 * 3 2 1 31 31 H 0.96994 * 119.99813 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47206 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.46838 * 60.00078 * 12 2 1 34 34 H 1.09004 * 110.68597 * 241.76064 * 16 14 13 35 35 H 1.09006 * 110.50732 * 118.82291 * 16 14 13 36 36 H 1.09003 * 110.05613 * 358.30215 * 18 17 16 37 37 H 1.08999 * 110.48644 * 335.78616 * 19 18 17 38 38 H 1.08997 * 110.48790 * 98.42899 * 19 18 17 39 39 H 1.09003 * 110.75479 * 279.62620 * 20 19 18 40 40 H 1.09002 * 110.91635 * 156.33002 * 20 19 18 41 41 H 1.09007 * 110.48372 * 203.38126 * 21 20 19 42 42 H 1.08994 * 110.59670 * 80.79400 * 21 20 19 43 43 H 1.09002 * 110.03221 * 238.57070 * 22 18 17 44 44 H 1.09000 * 110.03434 * 359.94861 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6373 -1.5995 -1.1315 6 6 1.7197 -0.2251 -2.4826 7 7 1.9096 -0.9764 -3.5453 8 14 1.0264 1.4994 -2.6696 9 1 2.1415 2.4790 -2.7139 10 1 0.2429 1.5840 -3.9283 11 1 0.1436 1.8059 -1.5156 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 2.2092 0.9706 3.0631 15 8 3.2758 1.4516 2.7456 16 6 1.3345 1.3747 4.2333 17 7 0.1810 0.4638 4.1341 18 6 -0.9791 0.4201 5.0277 19 6 -1.1298 -0.9923 5.6294 20 6 -2.6609 -1.2187 5.6883 21 6 -3.1554 -0.5535 4.3799 22 6 -2.2671 0.6991 4.2332 23 6 0.3973 -0.3154 3.0591 24 8 -0.3699 -1.1813 2.6869 25 1 -0.3635 0.6535 0.7931 26 1 -0.3634 0.3601 -0.9625 27 1 -0.3634 -1.0136 0.1694 28 1 3.1299 1.4427 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6893 -0.6351 -4.4261 32 1 3.1300 -0.7208 1.2495 33 1 1.6767 -1.7488 1.2493 34 1 1.0139 2.4118 4.1343 35 1 1.8626 1.2237 5.1748 36 1 -0.8653 1.1553 5.8243 37 1 -0.6590 -1.7340 4.9842 38 1 -0.7000 -1.0283 6.6304 39 1 -3.0912 -0.7247 6.5595 40 1 -2.8969 -2.2829 5.6938 41 1 -4.2040 -0.2693 4.4692 42 1 -3.0136 -1.2233 3.5318 43 1 -2.7782 1.5697 4.6444 44 1 -2.0288 0.8680 3.1830 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420080687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:40 Heat of formation + Delta-G solvation = -49.190731 kcal Electronic energy + Delta-G solvation = -25782.977913 eV Core-core repulsion = 22314.951493 eV Total energy + Delta-G solvation = -3468.026420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.37517 -39.94581 -38.85346 -37.99094 -36.96762 -34.97448 -33.60183 -30.20062 -29.58413 -28.18422 -27.94504 -27.53137 -26.92106 -23.53775 -22.76994 -21.54935 -20.97663 -20.03478 -18.56848 -18.10303 -18.01028 -17.44034 -17.14385 -16.85908 -16.32616 -15.82745 -15.31986 -15.18551 -15.03551 -14.96030 -14.79449 -14.66889 -14.26424 -14.09823 -13.98397 -13.79613 -12.79530 -12.76276 -12.70336 -12.58114 -12.49675 -12.12120 -12.04903 -11.98440 -11.87402 -11.77228 -11.43344 -11.41092 -11.13916 -11.01178 -10.97669 -10.64315 -10.26919 -9.80753 -8.35954 -6.35797 0.74165 1.20258 1.28278 1.30284 1.40907 2.08877 2.14868 2.27998 2.99590 3.15851 3.61217 3.71177 3.92465 4.03119 4.05051 4.25801 4.28749 4.32533 4.40958 4.51305 4.54349 4.61501 4.63513 4.64147 4.68169 4.74778 4.79207 4.82660 4.86414 4.93993 4.97784 5.08894 5.17279 5.25688 5.31770 5.34162 5.41364 5.55503 5.62293 5.68495 5.72078 6.23393 6.31478 6.49685 6.66677 7.20377 7.28744 8.80678 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020582 B = 0.005399 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.098424 B = 5184.711743 C = 5761.533536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.024 3.976 3 C -0.131 4.131 4 C -0.512 4.512 5 H 0.041 0.959 6 C 0.026 3.974 7 N -0.938 5.938 8 Si 0.938 3.062 9 H -0.279 1.279 10 H -0.308 1.308 11 H -0.227 1.227 12 C 0.151 3.849 13 N -0.579 5.579 14 C 0.508 3.492 15 O -0.502 6.502 16 C 0.075 3.925 17 N -0.617 5.617 18 C 0.176 3.824 19 C -0.137 4.137 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.135 4.135 23 C 0.691 3.309 24 O -0.565 6.565 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.266 0.734 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.044 0.956 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.100 0.900 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 7.620 24.931 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.022 3.978 3 C -0.188 4.188 4 C -0.551 4.551 5 H 0.059 0.941 6 C -0.173 4.173 7 N -0.577 5.577 8 Si 0.768 3.232 9 H -0.207 1.207 10 H -0.237 1.237 11 H -0.152 1.152 12 C 0.029 3.971 13 N -0.323 5.323 14 C 0.297 3.703 15 O -0.375 6.375 16 C -0.050 4.050 17 N -0.356 5.356 18 C 0.076 3.924 19 C -0.176 4.176 20 C -0.150 4.150 21 C -0.162 4.162 22 C -0.174 4.174 23 C 0.393 3.607 24 O -0.440 6.440 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.118 0.882 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.148 7.349 24.424 26.775 hybrid contribution 0.148 0.067 -1.470 1.479 sum -8.000 7.416 22.954 25.414 Atomic orbital electron populations 1.22015 0.96755 0.99738 0.98881 1.18783 0.93146 0.92955 0.92915 1.22175 1.00729 0.97180 0.98693 1.20922 1.32854 1.11339 0.89944 0.94069 1.25684 0.95263 1.00861 0.95447 1.70073 1.50460 1.37818 0.99360 0.86412 0.79286 0.81123 0.76412 1.20652 1.23685 1.15163 1.21471 0.98880 0.95581 0.81128 1.46670 1.21598 1.35805 1.28239 1.21653 0.85553 0.78231 0.84833 1.90792 1.21204 1.56207 1.69278 1.22752 0.85698 0.97884 0.98666 1.48046 1.23013 1.36326 1.28243 1.21988 0.80977 0.99344 0.90081 1.22770 0.97634 0.95865 1.01288 1.22399 0.94202 1.00691 0.97721 1.22284 0.99468 0.96590 0.97873 1.22560 0.95766 0.99388 0.99643 1.16077 0.81064 0.82546 0.80987 1.90936 1.48730 1.35227 1.69112 0.94983 0.94283 0.94195 0.93243 0.95052 0.93642 0.92517 0.89926 0.90686 0.83171 0.82309 0.83518 0.93712 0.88694 0.88583 0.92147 0.90481 0.94621 0.88184 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 6.51 71.98 0.47 -4.94 16 2 C 0.02 1.12 0.57 -52.93 -0.03 1.09 16 3 C -0.13 -5.82 6.70 71.98 0.48 -5.33 16 4 C -0.51 -29.44 8.62 25.60 0.22 -29.22 16 5 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 6 C 0.03 1.52 5.32 84.65 0.45 1.97 16 7 N -0.94 -59.42 13.96 21.45 0.30 -59.12 16 8 Si 0.94 46.31 22.79 68.60 1.56 47.87 16 9 H -0.28 -13.45 7.10 99.48 0.71 -12.75 16 10 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 11 H -0.23 -10.27 4.65 99.48 0.46 -9.80 16 12 C 0.15 6.30 4.66 86.38 0.40 6.70 16 13 N -0.58 -19.65 2.16 -773.13 -1.67 -21.32 16 14 C 0.51 14.43 6.66 87.94 0.59 15.01 16 15 O -0.50 -17.22 16.86 -2.88 -0.05 -17.27 16 16 C 0.07 1.16 7.65 85.76 0.66 1.81 16 17 N -0.62 -12.77 2.87 -813.70 -2.34 -15.11 16 18 C 0.18 2.59 3.65 45.71 0.17 2.76 16 19 C -0.14 -2.23 6.33 31.67 0.20 -2.03 16 20 C -0.11 -1.66 6.91 31.88 0.22 -1.44 16 21 C -0.12 -2.39 6.83 31.67 0.22 -2.18 16 22 C -0.14 -2.40 6.13 31.32 0.19 -2.21 16 23 C 0.69 21.95 5.85 179.44 1.05 23.00 16 24 O -0.56 -21.97 14.30 -3.81 -0.05 -22.02 16 25 H 0.03 1.34 6.97 -2.39 -0.02 1.32 16 26 H 0.04 1.87 4.30 -2.39 -0.01 1.86 16 27 H 0.04 1.93 7.56 -2.39 -0.02 1.92 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.03 1.43 2.26 -2.39 -0.01 1.43 16 30 H 0.04 1.78 6.19 -2.39 -0.01 1.76 16 31 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.08 3.45 8.00 -2.39 -0.02 3.44 16 33 H 0.07 3.30 7.86 -2.39 -0.02 3.28 16 34 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.16 1.24 8.14 -2.38 -0.02 1.23 16 36 H 0.15 0.82 8.13 -2.39 -0.02 0.80 16 37 H 0.04 1.10 6.57 -2.39 -0.02 1.09 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.04 0.99 7.46 -2.39 -0.02 0.97 16 Total: -1.00 -76.36 329.08 3.79 -72.57 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.75 Total: 9.39 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 5.28 Total: 5.00 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -3.71 Total: -95.54 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.10 Total: -39.29 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.56 Total: 47.87 kcal Total: -76.36 3.79 -72.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420080687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.380 kcal (2) G-P(sol) polarization free energy of solvation -76.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds