Wall clock time and date at job start Tue Mar 31 2020 07:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 H 1.09002 * 110.53390 * 302.16377 * 3 2 1 5 5 C 1.51589 * 110.89683 * 179.35062 * 3 2 1 6 6 O 1.21228 * 127.15838 * 61.56897 * 5 3 2 7 7 N 1.34768 * 105.68183 * 241.64810 * 5 3 2 8 8 C 1.46496 * 124.17838 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47235 * 269.72395 * 8 7 5 10 10 C 1.53005 * 109.46964 * 60.00216 * 9 8 7 11 11 C 1.52999 * 109.47439 * 300.00125 * 9 8 7 12 12 C 1.50702 * 109.47260 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99510 * 4.79197 * 12 9 8 14 14 C 1.37875 * 120.00322 * 184.79821 * 12 9 8 15 15 N 1.31512 * 119.99681 * 351.79035 * 14 12 9 16 16 Si 1.86802 * 120.00102 * 171.79389 * 14 12 9 17 17 H 1.48499 * 109.47057 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46828 * 239.99782 * 16 14 12 19 19 H 1.48500 * 109.46938 * 119.99721 * 16 14 12 20 20 C 1.33793 * 111.64467 * 359.65824 * 7 5 3 21 21 O 1.21538 * 123.77169 * 180.23287 * 20 7 5 22 22 N 1.34528 * 112.45860 * 0.22798 * 20 7 5 23 23 C 1.46503 * 126.69334 * 179.97438 * 22 20 7 24 24 C 1.52999 * 117.49829 * 8.64223 * 23 22 20 25 25 C 1.52995 * 60.00138 * 252.51462 * 24 23 22 26 26 H 1.08995 * 109.47077 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46534 * 300.00297 * 1 2 3 28 28 H 1.09001 * 109.46767 * 60.00478 * 1 2 3 29 29 H 1.09006 * 109.46744 * 239.99649 * 2 1 3 30 30 H 1.09001 * 109.47153 * 119.99899 * 2 1 3 31 31 H 1.09001 * 109.46854 * 149.72525 * 8 7 5 32 32 H 1.09002 * 109.46767 * 29.72500 * 8 7 5 33 33 H 1.08996 * 109.47181 * 172.69168 * 10 9 8 34 34 H 1.09006 * 109.47010 * 292.68678 * 10 9 8 35 35 H 1.09002 * 109.47170 * 52.68877 * 10 9 8 36 36 H 1.09000 * 109.46967 * 307.54860 * 11 9 8 37 37 H 1.08998 * 109.46863 * 67.54963 * 11 9 8 38 38 H 1.09003 * 109.47152 * 187.55062 * 11 9 8 39 39 H 0.97002 * 120.00215 * 5.70905 * 15 14 12 40 40 H 1.08999 * 115.55005 * 154.35571 * 23 22 20 41 41 H 1.09004 * 117.49417 * 0.02562 * 24 23 22 42 42 H 1.08995 * 117.49836 * 145.02225 * 24 23 22 43 43 H 1.09002 * 117.50223 * 252.51137 * 25 24 23 44 44 H 1.09001 * 117.50210 * 107.49234 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6552 1.9841 -0.8641 5 6 3.5554 1.4802 0.0161 6 8 4.3079 1.0354 -0.8239 7 7 3.8920 2.1096 1.1592 8 6 5.2710 2.3659 1.5823 9 6 5.7723 1.1918 2.4256 10 6 5.7243 -0.0911 1.5932 11 6 4.8815 1.0329 3.6593 12 6 7.1910 1.4552 2.8602 13 1 7.6593 2.4009 2.6307 14 6 7.8912 0.4888 3.5507 15 7 7.2758 -0.5948 3.9711 16 14 9.7139 0.7186 3.8892 17 1 10.1644 2.0123 3.3162 18 1 10.4770 -0.3922 3.2655 19 1 9.9489 0.7186 5.3555 20 6 2.8112 2.4774 1.8568 21 8 2.8607 3.0641 2.9200 22 7 1.6634 2.1254 1.2497 23 6 0.3040 2.3724 1.7367 24 6 0.1455 3.2766 2.9608 25 6 -0.0825 1.7692 3.0886 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.3051 3.2798 2.1752 32 1 5.9055 2.4790 0.7033 33 1 6.2004 -0.9009 2.1460 34 1 4.6861 -0.3525 1.3881 35 1 6.2521 0.0661 0.6525 36 1 4.8087 1.9876 4.1802 37 1 3.8871 0.7107 3.3504 38 1 5.3142 0.2872 4.3263 39 1 6.3511 -0.7537 3.7251 40 1 -0.4683 2.4238 0.9693 41 1 1.0528 3.6880 3.4033 42 1 -0.7311 3.9233 2.9986 43 1 -1.1092 1.4240 3.2107 44 1 0.6746 1.1885 3.6156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420083616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:33 Heat of formation + Delta-G solvation = -3.835883 kcal Electronic energy + Delta-G solvation = -25971.088412 eV Core-core repulsion = 22505.028725 eV Total energy + Delta-G solvation = -3466.059686 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29204 -38.64718 -37.57916 -36.21629 -35.96322 -34.14541 -32.22909 -30.49737 -27.56193 -26.20428 -25.95363 -24.77444 -23.55849 -22.49207 -22.19947 -21.38891 -19.81349 -18.77268 -17.38391 -16.97410 -16.50641 -16.08445 -15.97492 -15.01531 -14.66843 -14.60615 -14.16268 -13.84282 -13.74298 -13.50290 -12.99593 -12.83459 -12.71583 -12.61300 -12.30369 -11.69726 -11.59466 -11.53563 -11.39932 -11.23926 -10.96188 -10.74330 -10.61889 -10.54121 -10.51472 -10.30198 -10.17597 -10.01871 -9.70722 -9.61586 -8.94427 -8.64851 -8.44421 -8.14675 -6.21598 -4.06014 1.90368 2.26968 3.09660 3.30278 3.46206 3.49193 3.62685 3.79212 4.14869 4.48093 4.54432 4.66486 4.67883 4.83327 4.90021 5.11155 5.17957 5.25830 5.37483 5.47114 5.60393 5.66033 5.76350 5.86331 5.91774 6.01540 6.03032 6.08801 6.18366 6.28376 6.34722 6.59043 6.63348 6.72054 6.87229 6.90611 7.18183 7.22624 7.49954 7.54834 7.70332 7.78532 8.21968 8.41756 8.44821 8.87334 9.65251 11.04194 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.005187 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.672238 B = 5396.852711 C = 5889.623256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.119 4.119 3 C 0.095 3.905 4 H 0.119 0.881 5 C 0.522 3.478 6 O -0.466 6.466 7 N -0.564 5.564 8 C 0.136 3.864 9 C 0.040 3.960 10 C -0.138 4.138 11 C -0.132 4.132 12 C -0.586 4.586 13 H 0.052 0.948 14 C 0.027 3.973 15 N -0.916 5.916 16 Si 1.071 2.929 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.288 1.288 20 C 0.702 3.298 21 O -0.532 6.532 22 N -0.602 5.602 23 C 0.107 3.893 24 C -0.186 4.186 25 C -0.192 4.192 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.008 0.992 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.006 0.994 38 H 0.065 0.935 39 H 0.281 0.719 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.759 3.819 -7.610 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C -0.012 4.012 4 H 0.137 0.863 5 C 0.309 3.691 6 O -0.336 6.336 7 N -0.308 5.308 8 C 0.016 3.984 9 C 0.039 3.961 10 C -0.196 4.196 11 C -0.190 4.190 12 C -0.625 4.625 13 H 0.071 0.929 14 C -0.177 4.177 15 N -0.557 5.557 16 Si 0.900 3.100 17 H -0.215 1.215 18 H -0.214 1.214 19 H -0.215 1.215 20 C 0.405 3.595 21 O -0.406 6.406 22 N -0.339 5.339 23 C 0.004 3.996 24 C -0.223 4.223 25 C -0.231 4.231 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.027 0.973 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.032 3.269 -6.661 16.763 hybrid contribution -1.332 0.598 -0.823 1.676 sum -16.364 3.867 -7.484 18.405 Atomic orbital electron populations 1.21978 0.94431 1.02591 1.02576 1.21652 0.97197 0.92753 1.04187 1.22167 0.93121 0.96652 0.89256 0.86346 1.20666 0.90224 0.76859 0.81397 1.90779 1.58206 1.44306 1.40319 1.46645 1.09672 1.53190 1.21255 1.22120 0.75088 1.01340 0.99803 1.18633 0.95838 0.90349 0.91265 1.22000 0.97102 1.00832 0.99704 1.21988 0.95640 1.01382 1.00036 1.21736 0.96463 1.03312 1.40967 0.92938 1.25663 1.05537 0.93354 0.93193 1.70787 1.15132 1.28578 1.41168 0.83523 0.74666 0.75362 0.76451 1.21534 1.21392 1.21469 1.15914 0.80435 0.79572 0.83577 1.90861 1.85134 1.44515 1.20088 1.47002 1.04329 1.60085 1.22528 1.21286 0.81394 1.06024 0.90862 1.23746 1.05277 0.93553 0.99766 1.23452 1.02626 0.96977 0.99996 0.92037 0.91191 0.92507 0.89500 0.90724 0.89835 0.89944 0.91186 0.97325 0.94006 0.93882 0.97454 0.91642 0.90217 0.84751 0.85192 0.88366 0.88137 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.37 37.16 0.35 -0.91 16 2 C -0.12 -1.31 5.72 -26.73 -0.15 -1.46 16 3 C 0.10 1.19 3.52 -68.20 -0.24 0.95 16 4 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 5 C 0.52 8.93 6.14 -10.55 -0.06 8.87 16 6 O -0.47 -9.04 16.80 5.60 0.09 -8.95 16 7 N -0.56 -10.64 2.16 -120.73 -0.26 -10.90 16 8 C 0.14 2.94 4.67 -4.05 -0.02 2.92 16 9 C 0.04 1.00 0.57 -155.66 -0.09 0.91 16 10 C -0.14 -3.40 6.92 37.16 0.26 -3.15 16 11 C -0.13 -3.30 6.89 37.16 0.26 -3.04 16 12 C -0.59 -16.08 8.00 -34.44 -0.28 -16.36 16 13 H 0.05 1.43 7.76 -52.49 -0.41 1.02 16 14 C 0.03 0.75 5.07 -17.82 -0.09 0.66 16 15 N -0.92 -26.97 12.16 55.43 0.67 -26.29 16 16 Si 1.07 25.16 29.91 -169.99 -5.08 20.08 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.70 12.56 6.77 -88.02 -0.60 11.96 16 21 O -0.53 -10.81 13.05 5.33 0.07 -10.74 16 22 N -0.60 -8.17 3.07 -164.83 -0.51 -8.67 16 23 C 0.11 1.13 4.65 -67.93 -0.32 0.82 16 24 C -0.19 -2.10 9.83 -26.73 -0.26 -2.36 16 25 C -0.19 -2.05 9.85 -26.73 -0.26 -2.32 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.56 4.44 -51.93 -0.23 0.33 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.83 7.86 -51.93 -0.41 1.42 16 32 H 0.08 1.77 8.00 -51.93 -0.42 1.35 16 33 H 0.07 1.88 5.17 -51.93 -0.27 1.61 16 34 H 0.01 0.18 6.81 -51.93 -0.35 -0.17 16 35 H 0.04 1.03 7.87 -51.93 -0.41 0.62 16 36 H 0.04 1.09 7.70 -51.93 -0.40 0.69 16 37 H 0.01 0.15 6.80 -51.93 -0.35 -0.20 16 38 H 0.06 1.77 5.30 -51.93 -0.28 1.50 16 39 H 0.28 8.18 3.59 -40.82 -0.15 8.03 16 40 H 0.14 0.98 7.35 -51.93 -0.38 0.60 16 41 H 0.13 1.95 5.51 -51.93 -0.29 1.66 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -31.68 335.72 -7.98 -39.66 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.51 Total: 3.28 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.51 Total: -2.52 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.09 Total: -45.86 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.16 Total: -19.69 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.68 -7.98 -39.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420083616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.821 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds