Wall clock time and date at job start Tue Mar 31 2020 07:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 H 1.09002 * 110.53390 * 302.16377 * 3 2 1 5 5 C 1.51589 * 110.89683 * 179.35062 * 3 2 1 6 6 O 1.21228 * 127.15838 * 61.56897 * 5 3 2 7 7 N 1.34768 * 105.68183 * 241.64810 * 5 3 2 8 8 C 1.46496 * 124.17838 * 179.97438 * 7 5 3 9 9 C 1.52997 * 109.47235 * 269.72395 * 8 7 5 10 10 C 1.53005 * 109.46964 * 60.00216 * 9 8 7 11 11 C 1.52999 * 109.47439 * 300.00125 * 9 8 7 12 12 C 1.50702 * 109.47260 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99510 * 4.79197 * 12 9 8 14 14 C 1.37875 * 120.00322 * 184.79821 * 12 9 8 15 15 N 1.31512 * 119.99681 * 351.79035 * 14 12 9 16 16 Si 1.86802 * 120.00102 * 171.79389 * 14 12 9 17 17 H 1.48499 * 109.47057 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46828 * 239.99782 * 16 14 12 19 19 H 1.48500 * 109.46938 * 119.99721 * 16 14 12 20 20 C 1.33793 * 111.64467 * 359.65824 * 7 5 3 21 21 O 1.21538 * 123.77169 * 180.23287 * 20 7 5 22 22 N 1.34528 * 112.45860 * 0.22798 * 20 7 5 23 23 C 1.46503 * 126.69334 * 179.97438 * 22 20 7 24 24 C 1.52999 * 117.49829 * 8.64223 * 23 22 20 25 25 C 1.52995 * 60.00138 * 252.51462 * 24 23 22 26 26 H 1.08995 * 109.47077 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46534 * 300.00297 * 1 2 3 28 28 H 1.09001 * 109.46767 * 60.00478 * 1 2 3 29 29 H 1.09006 * 109.46744 * 239.99649 * 2 1 3 30 30 H 1.09001 * 109.47153 * 119.99899 * 2 1 3 31 31 H 1.09001 * 109.46854 * 149.72525 * 8 7 5 32 32 H 1.09002 * 109.46767 * 29.72500 * 8 7 5 33 33 H 1.08996 * 109.47181 * 172.69168 * 10 9 8 34 34 H 1.09006 * 109.47010 * 292.68678 * 10 9 8 35 35 H 1.09002 * 109.47170 * 52.68877 * 10 9 8 36 36 H 1.09000 * 109.46967 * 307.54860 * 11 9 8 37 37 H 1.08998 * 109.46863 * 67.54963 * 11 9 8 38 38 H 1.09003 * 109.47152 * 187.55062 * 11 9 8 39 39 H 0.97002 * 120.00215 * 5.70905 * 15 14 12 40 40 H 1.08999 * 115.55005 * 154.35571 * 23 22 20 41 41 H 1.09004 * 117.49417 * 0.02562 * 24 23 22 42 42 H 1.08995 * 117.49836 * 145.02225 * 24 23 22 43 43 H 1.09002 * 117.50223 * 252.51137 * 25 24 23 44 44 H 1.09001 * 117.50210 * 107.49234 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6552 1.9841 -0.8641 5 6 3.5554 1.4802 0.0161 6 8 4.3079 1.0354 -0.8239 7 7 3.8920 2.1096 1.1592 8 6 5.2710 2.3659 1.5823 9 6 5.7723 1.1918 2.4256 10 6 5.7243 -0.0911 1.5932 11 6 4.8815 1.0329 3.6593 12 6 7.1910 1.4552 2.8602 13 1 7.6593 2.4009 2.6307 14 6 7.8912 0.4888 3.5507 15 7 7.2758 -0.5948 3.9711 16 14 9.7139 0.7186 3.8892 17 1 10.1644 2.0123 3.3162 18 1 10.4770 -0.3922 3.2655 19 1 9.9489 0.7186 5.3555 20 6 2.8112 2.4774 1.8568 21 8 2.8607 3.0641 2.9200 22 7 1.6634 2.1254 1.2497 23 6 0.3040 2.3724 1.7367 24 6 0.1455 3.2766 2.9608 25 6 -0.0825 1.7692 3.0886 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.3051 3.2798 2.1752 32 1 5.9055 2.4790 0.7033 33 1 6.2004 -0.9009 2.1460 34 1 4.6861 -0.3525 1.3881 35 1 6.2521 0.0661 0.6525 36 1 4.8087 1.9876 4.1802 37 1 3.8871 0.7107 3.3504 38 1 5.3142 0.2872 4.3263 39 1 6.3511 -0.7537 3.7251 40 1 -0.4683 2.4238 0.9693 41 1 1.0528 3.6880 3.4033 42 1 -0.7311 3.9233 2.9986 43 1 -1.1092 1.4240 3.2107 44 1 0.6746 1.1885 3.6156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420083616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:33 Heat of formation + Delta-G solvation = -22.383294 kcal Electronic energy + Delta-G solvation = -25971.892688 eV Core-core repulsion = 22505.028725 eV Total energy + Delta-G solvation = -3466.863963 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.62644 -39.96896 -39.04452 -37.81619 -37.23992 -35.45235 -33.55076 -32.23184 -28.82916 -28.04368 -27.82313 -26.69659 -24.77005 -23.39477 -23.27609 -22.48134 -21.32897 -20.45080 -19.19313 -18.31535 -17.95172 -17.45168 -17.12271 -16.46021 -15.89209 -15.70575 -15.61081 -15.26687 -15.14666 -14.89393 -14.77227 -14.66248 -14.17255 -13.67789 -13.47430 -13.30853 -13.20575 -12.73023 -12.67411 -12.54221 -12.46277 -12.42631 -12.32395 -12.12322 -11.89919 -11.79702 -11.73060 -11.65790 -11.22998 -10.98137 -10.72927 -10.50037 -10.27946 -9.70526 -8.44380 -6.30287 0.56524 1.03242 1.54258 1.62254 1.78609 1.86655 1.96276 2.58026 2.85411 2.96768 3.20759 3.50329 3.75608 3.85836 3.98642 4.00471 4.07995 4.13448 4.26230 4.30720 4.41051 4.42664 4.46284 4.63769 4.67802 4.77435 4.80311 4.82174 4.84850 4.99295 5.05825 5.09106 5.13198 5.16597 5.18387 5.31320 5.42299 5.46664 5.56926 5.68334 6.07362 6.16896 6.24275 6.36334 6.65142 7.04983 7.48465 8.81692 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.005187 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.672238 B = 5396.852711 C = 5889.623256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.107 3.893 4 H 0.164 0.836 5 C 0.512 3.488 6 O -0.494 6.494 7 N -0.575 5.575 8 C 0.147 3.853 9 C 0.033 3.967 10 C -0.118 4.118 11 C -0.109 4.109 12 C -0.600 4.600 13 H 0.049 0.951 14 C -0.019 4.019 15 N -0.939 5.939 16 Si 1.115 2.885 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.284 1.284 20 C 0.691 3.309 21 O -0.566 6.566 22 N -0.589 5.589 23 C 0.108 3.892 24 C -0.195 4.195 25 C -0.188 4.188 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.019 0.981 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.014 0.986 38 H 0.041 0.959 39 H 0.274 0.726 40 H 0.185 0.815 41 H 0.088 0.912 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.281 4.160 -9.312 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.001 3.999 4 H 0.181 0.819 5 C 0.301 3.699 6 O -0.366 6.366 7 N -0.319 5.319 8 C 0.026 3.974 9 C 0.032 3.968 10 C -0.176 4.176 11 C -0.167 4.167 12 C -0.638 4.638 13 H 0.067 0.933 14 C -0.219 4.219 15 N -0.580 5.580 16 Si 0.938 3.062 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.210 1.210 20 C 0.394 3.606 21 O -0.442 6.442 22 N -0.326 5.326 23 C 0.007 3.993 24 C -0.232 4.232 25 C -0.227 4.227 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.033 0.967 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.202 0.798 41 H 0.106 0.894 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.618 3.606 -8.386 19.843 hybrid contribution -0.597 0.496 -0.285 0.827 sum -18.215 4.103 -8.671 20.587 Atomic orbital electron populations 1.21964 0.91338 1.03645 1.03948 1.21695 0.99734 0.90965 1.03148 1.22389 0.89171 0.98319 0.89980 0.81875 1.21525 0.92523 0.75653 0.80208 1.90758 1.59630 1.45258 1.40970 1.46650 1.08906 1.53950 1.22359 1.21646 0.77200 0.99470 0.99052 1.18652 0.94927 0.91651 0.91605 1.21761 0.97314 0.99845 0.98716 1.21718 0.95795 0.99630 0.99544 1.22064 0.97848 1.03144 1.40759 0.93289 1.26975 1.09101 0.92873 0.92903 1.70876 1.15036 1.29607 1.42485 0.82959 0.70400 0.76207 0.76656 1.19773 1.20695 1.20968 1.16154 0.81358 0.79672 0.83368 1.90858 1.85716 1.46091 1.21543 1.47199 1.04269 1.58829 1.22282 1.21919 0.80316 1.05095 0.91942 1.23689 1.04825 0.94313 1.00389 1.23445 1.03428 0.96117 0.99712 0.91322 0.90945 0.89847 0.88818 0.93631 0.90701 0.90064 0.93562 0.96199 0.94662 0.95231 0.96749 0.94062 0.91111 0.79800 0.89354 0.85077 0.84516 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.37 71.98 0.67 -1.02 16 2 C -0.12 -2.23 5.72 30.60 0.18 -2.05 16 3 C 0.11 2.37 3.52 44.37 0.16 2.53 16 4 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 5 C 0.51 17.11 6.14 87.94 0.54 17.65 16 6 O -0.49 -18.98 16.80 -2.87 -0.05 -19.03 16 7 N -0.57 -21.87 2.16 -773.13 -1.67 -23.54 16 8 C 0.15 6.57 4.67 86.38 0.40 6.97 16 9 C 0.03 1.68 0.57 -52.93 -0.03 1.65 16 10 C -0.12 -5.98 6.92 71.98 0.50 -5.48 16 11 C -0.11 -5.65 6.89 71.98 0.50 -5.15 16 12 C -0.60 -33.73 8.00 25.60 0.20 -33.53 16 13 H 0.05 2.73 7.76 -2.91 -0.02 2.70 16 14 C -0.02 -1.11 5.07 84.65 0.43 -0.68 16 15 N -0.94 -56.71 12.16 21.45 0.26 -56.45 16 16 Si 1.11 51.04 29.91 68.60 2.05 53.09 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 C 0.69 24.78 6.77 179.44 1.22 25.99 16 21 O -0.57 -23.77 13.05 -3.83 -0.05 -23.82 16 22 N -0.59 -14.77 3.07 -793.82 -2.44 -17.21 16 23 C 0.11 1.90 4.65 44.99 0.21 2.11 16 24 C -0.19 -4.02 9.83 30.59 0.30 -3.72 16 25 C -0.19 -3.61 9.85 30.59 0.30 -3.31 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.79 4.44 -2.39 -0.01 0.78 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 3.42 7.86 -2.39 -0.02 3.40 16 32 H 0.08 3.58 8.00 -2.39 -0.02 3.57 16 33 H 0.05 2.55 5.17 -2.39 -0.01 2.54 16 34 H 0.02 0.91 6.81 -2.38 -0.02 0.89 16 35 H 0.03 1.77 7.87 -2.39 -0.02 1.75 16 36 H 0.03 1.56 7.70 -2.39 -0.02 1.54 16 37 H 0.01 0.67 6.80 -2.39 -0.02 0.66 16 38 H 0.04 2.33 5.30 -2.39 -0.01 2.31 16 39 H 0.27 16.51 3.59 -92.71 -0.33 16.18 16 40 H 0.19 1.49 7.35 -2.39 -0.02 1.47 16 41 H 0.09 2.69 5.51 -2.38 -0.01 2.67 16 42 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -73.06 335.72 5.11 -67.95 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.44 Total: 17.08 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 5.57 Total: 1.94 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -3.85 Total: -97.21 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.10 Total: -42.85 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -73.06 5.11 -67.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420083616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.565 kcal (2) G-P(sol) polarization free energy of solvation -73.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds