Wall clock time and date at job start Tue Mar 31 2020 07:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47150 * 2 1 4 4 H 1.09000 * 109.29984 * 304.58544 * 3 2 1 5 5 C 1.52916 * 109.30156 * 184.99654 * 3 2 1 6 6 C 1.53349 * 108.67627 * 189.13892 * 5 3 2 7 7 H 1.09000 * 109.67610 * 187.30448 * 6 5 3 8 8 C 1.50702 * 109.67474 * 307.79995 * 6 5 3 9 9 O 1.21282 * 119.99826 * 95.68372 * 8 6 5 10 10 N 1.34775 * 120.00213 * 275.68445 * 8 6 5 11 11 C 1.46496 * 120.00090 * 184.62963 * 10 8 6 12 12 C 1.53003 * 109.47062 * 184.72258 * 11 10 8 13 13 C 1.50696 * 115.54994 * 297.33784 * 12 11 10 14 14 H 1.07997 * 120.00411 * 92.38063 * 13 12 11 15 15 C 1.37887 * 119.99633 * 272.38468 * 13 12 11 16 16 N 1.31508 * 119.99713 * 180.42613 * 15 13 12 17 17 Si 1.86797 * 120.00011 * 0.42642 * 15 13 12 18 18 H 1.48503 * 109.47277 * 267.06281 * 17 15 13 19 19 H 1.48498 * 109.46995 * 147.06279 * 17 15 13 20 20 H 1.48500 * 109.47394 * 27.06144 * 17 15 13 21 21 C 1.53002 * 117.51791 * 83.03637 * 12 11 10 22 22 C 1.53000 * 60.00177 * 107.48047 * 21 12 11 23 23 C 1.53072 * 108.42257 * 67.53270 * 6 5 3 24 24 C 1.50177 * 109.88643 * 311.08301 * 23 6 5 25 25 O 1.21284 * 118.24435 * 197.62350 * 24 23 6 26 26 N 1.33351 * 123.50638 * 17.62250 * 24 23 6 27 27 H 1.08997 * 109.46720 * 60.00372 * 1 2 3 28 28 H 1.08995 * 109.47137 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47289 * 300.00180 * 1 2 3 30 30 H 1.08994 * 109.47444 * 239.99810 * 2 1 3 31 31 H 1.09006 * 109.46793 * 119.99880 * 2 1 3 32 32 H 1.09003 * 109.60107 * 69.38528 * 5 3 2 33 33 H 1.08997 * 109.60513 * 308.89700 * 5 3 2 34 34 H 0.96995 * 119.99658 * 4.63156 * 10 8 6 35 35 H 1.08991 * 109.47331 * 64.71966 * 11 10 8 36 36 H 1.08999 * 109.46963 * 304.71570 * 11 10 8 37 37 H 0.97000 * 119.99836 * 180.02562 * 16 15 13 38 38 H 1.09000 * 117.49973 * 214.97149 * 21 12 11 39 39 H 1.09002 * 117.50202 * 359.97438 * 21 12 11 40 40 H 1.08997 * 117.49952 * 252.51078 * 22 21 12 41 41 H 1.08994 * 117.49645 * 107.48436 * 22 21 12 42 42 H 1.08996 * 109.40051 * 71.23178 * 23 6 5 43 43 H 1.09004 * 109.40066 * 190.97351 * 23 6 5 44 44 H 0.97004 * 117.94292 * 177.75270 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6096 1.9768 -0.8469 5 6 3.5640 1.4398 -0.1257 6 6 4.0783 2.8659 0.1051 7 1 5.1465 2.9097 -0.1075 8 6 3.3419 3.8229 -0.7965 9 8 2.3772 4.4282 -0.3796 10 7 3.7554 4.0062 -2.0661 11 6 3.1038 5.0099 -2.9111 12 6 3.6777 4.9347 -4.3274 13 6 5.1477 5.2427 -4.4502 14 1 5.8727 4.4435 -4.4035 15 6 5.5671 6.5449 -4.6222 16 7 6.8495 6.8127 -4.7378 17 14 4.3140 7.9284 -4.6911 18 1 3.9419 8.1894 -6.1048 19 1 4.9004 9.1573 -4.0986 20 1 3.1034 7.5384 -3.9245 21 6 3.0956 3.8801 -5.2708 22 6 2.7679 5.3596 -5.4818 23 6 3.8275 3.2397 1.5681 24 6 2.4091 2.9176 1.9418 25 8 1.9460 3.4345 2.9364 26 7 1.6315 2.0937 1.2383 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.8480 1.1056 -1.1236 33 1 3.9914 0.7714 0.6218 34 1 4.4845 3.4734 -2.4204 35 1 3.2823 6.0030 -2.4990 36 1 2.0314 4.8172 -2.9429 37 1 7.1446 7.7288 -4.8585 38 1 3.7760 3.4092 -5.9804 39 1 2.3039 3.2394 -4.8825 40 1 1.7604 5.6925 -5.2323 41 1 3.2327 5.8620 -6.3301 42 1 4.5075 2.6766 2.2074 43 1 4.0043 4.3066 1.7046 44 1 0.7378 1.9169 1.5716 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431143911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:18 Heat of formation + Delta-G solvation = -65.415419 kcal Electronic energy + Delta-G solvation = -24782.622084 eV Core-core repulsion = 21313.892109 eV Total energy + Delta-G solvation = -3468.729976 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91460 -38.84124 -37.24801 -36.79718 -33.90297 -33.51004 -32.20019 -32.03900 -29.17991 -27.21294 -25.67178 -24.71530 -23.07979 -21.83294 -21.74581 -20.57221 -19.50418 -18.60825 -17.34691 -16.64180 -16.35864 -16.20420 -15.46392 -15.21741 -15.11431 -14.73393 -14.31033 -13.96746 -13.87569 -13.63016 -13.44295 -13.31145 -12.80524 -12.66796 -12.48112 -12.18233 -11.97262 -11.90508 -11.58463 -11.35493 -11.21738 -11.16410 -10.94598 -10.86078 -10.57840 -10.24255 -9.74684 -9.63923 -9.41856 -9.25111 -8.99063 -8.73316 -8.63004 -8.36596 -6.22728 -4.27996 2.83370 2.95935 3.23580 3.34882 3.35240 3.39694 3.59927 4.34103 4.35601 4.40830 4.48455 4.67735 4.80286 4.86634 4.95339 5.04094 5.09385 5.20517 5.30393 5.42541 5.43816 5.55909 5.60289 5.66147 5.66469 5.75431 5.82347 5.89519 5.94795 6.00649 6.01304 6.18480 6.35763 6.44577 6.63875 6.86181 6.91206 6.99999 7.05200 7.45580 7.61065 8.07050 8.33284 8.36629 8.65975 8.76627 9.40591 10.88351 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019920 B = 0.004462 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.283867 B = 6273.103858 C = 6815.948333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C 0.138 3.862 4 H 0.077 0.923 5 C -0.120 4.120 6 C -0.116 4.116 7 H 0.109 0.891 8 C 0.506 3.494 9 O -0.547 6.547 10 N -0.698 5.698 11 C 0.157 3.843 12 C -0.015 4.015 13 C -0.492 4.492 14 H 0.079 0.921 15 C 0.082 3.918 16 N -0.894 5.894 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.293 1.293 20 H -0.257 1.257 21 C -0.177 4.177 22 C -0.193 4.193 23 C -0.116 4.116 24 C 0.540 3.460 25 O -0.567 6.567 26 N -0.708 5.708 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.405 0.595 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -14.444 6.920 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.172 4.172 3 C 0.032 3.968 4 H 0.095 0.905 5 C -0.158 4.158 6 C -0.138 4.138 7 H 0.128 0.872 8 C 0.290 3.710 9 O -0.425 6.425 10 N -0.347 5.347 11 C 0.033 3.967 12 C -0.017 4.017 13 C -0.530 4.530 14 H 0.096 0.904 15 C -0.122 4.122 16 N -0.530 5.530 17 Si 0.706 3.294 18 H -0.205 1.205 19 H -0.220 1.220 20 H -0.181 1.181 21 C -0.215 4.215 22 C -0.231 4.231 23 C -0.156 4.156 24 C 0.328 3.672 25 O -0.447 6.447 26 N -0.360 5.360 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.240 0.760 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.354 -13.511 7.597 17.156 hybrid contribution -0.478 0.643 -0.434 0.911 sum -7.832 -12.868 7.162 16.680 Atomic orbital electron populations 1.21799 0.95447 1.01986 1.02128 1.21920 0.96608 0.95540 1.03167 1.21013 0.95023 0.93191 0.87543 0.90507 1.21900 0.94355 0.95219 1.04309 1.21499 1.02346 0.95133 0.94811 0.87240 1.20354 0.84745 0.83131 0.82739 1.90716 1.27460 1.49455 1.74858 1.45873 1.37626 1.39590 1.11660 1.21121 0.94113 0.90966 0.90502 1.19619 0.95208 1.00123 0.86721 1.20163 0.87446 0.94055 1.51296 0.90351 1.24960 0.94979 0.98663 0.93582 1.69875 1.14211 1.20311 1.48616 0.86870 0.82433 0.81454 0.78685 1.20455 1.22003 1.18100 1.22831 1.02634 0.91084 1.04922 1.22935 0.99391 0.98143 1.02627 1.21483 0.94053 1.05046 0.95067 1.19808 0.88287 0.77012 0.82117 1.90718 1.74456 1.51531 1.27955 1.45428 1.17827 1.47503 1.25253 0.92231 0.92266 0.92776 0.90246 0.91182 0.88956 0.89695 0.75974 0.92061 0.93615 0.92415 0.89413 0.90978 0.90777 0.89187 0.87753 0.87673 0.76916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.75 37.16 0.36 -0.79 16 2 C -0.13 -0.99 5.57 -26.73 -0.15 -1.14 16 3 C 0.14 1.39 2.38 -68.38 -0.16 1.22 16 4 H 0.08 0.94 7.27 -51.93 -0.38 0.56 16 5 C -0.12 -1.05 4.93 -26.59 -0.13 -1.18 16 6 C -0.12 -1.34 3.07 -91.55 -0.28 -1.62 16 7 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 8 C 0.51 8.12 5.63 -10.99 -0.06 8.06 16 9 O -0.55 -10.86 14.59 5.56 0.08 -10.78 16 10 N -0.70 -11.77 5.46 -60.30 -0.33 -12.10 16 11 C 0.16 3.12 5.19 -4.04 -0.02 3.10 16 12 C -0.02 -0.32 0.86 -155.66 -0.13 -0.46 16 13 C -0.49 -12.31 9.07 -34.44 -0.31 -12.62 16 14 H 0.08 2.10 8.06 -52.49 -0.42 1.68 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 17 Si 0.88 20.94 24.85 -169.99 -4.23 16.72 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.26 -5.90 5.71 56.52 0.32 -5.58 16 21 C -0.18 -3.21 9.95 -26.73 -0.27 -3.48 16 22 C -0.19 -3.82 7.48 -26.73 -0.20 -4.02 16 23 C -0.12 -1.46 5.21 -28.10 -0.15 -1.61 16 24 C 0.54 8.22 6.38 -11.87 -0.08 8.14 16 25 O -0.57 -10.91 17.78 5.55 0.10 -10.81 16 26 N -0.71 -8.82 4.91 -54.86 -0.27 -9.09 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.41 6.62 -51.93 -0.34 0.07 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.41 6.27 8.25 -40.82 -0.34 5.93 16 35 H 0.06 1.38 6.80 -51.93 -0.35 1.03 16 36 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.09 1.88 7.14 -51.93 -0.37 1.51 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.10 1.49 8.10 -51.93 -0.42 1.07 16 44 H 0.39 4.69 6.97 -40.82 -0.28 4.41 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -32.75 347.56 -7.50 -40.25 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.19 Total: 9.76 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.68 Total: -4.30 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.17 Total: -46.07 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.18 Total: -21.59 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.23 Total: 16.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.75 -7.50 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431143911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.168 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds