Wall clock time and date at job start Tue Mar 31 2020 07:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47150 * 2 1 4 4 H 1.09000 * 109.29984 * 304.58544 * 3 2 1 5 5 C 1.52916 * 109.30156 * 184.99654 * 3 2 1 6 6 C 1.53349 * 108.67627 * 189.13892 * 5 3 2 7 7 H 1.09000 * 109.67610 * 187.30448 * 6 5 3 8 8 C 1.50702 * 109.67474 * 307.79995 * 6 5 3 9 9 O 1.21282 * 119.99826 * 95.68372 * 8 6 5 10 10 N 1.34775 * 120.00213 * 275.68445 * 8 6 5 11 11 C 1.46496 * 120.00090 * 184.62963 * 10 8 6 12 12 C 1.53003 * 109.47062 * 184.72258 * 11 10 8 13 13 C 1.50696 * 115.54994 * 297.33784 * 12 11 10 14 14 H 1.07997 * 120.00411 * 92.38063 * 13 12 11 15 15 C 1.37887 * 119.99633 * 272.38468 * 13 12 11 16 16 N 1.31508 * 119.99713 * 180.42613 * 15 13 12 17 17 Si 1.86797 * 120.00011 * 0.42642 * 15 13 12 18 18 H 1.48503 * 109.47277 * 267.06281 * 17 15 13 19 19 H 1.48498 * 109.46995 * 147.06279 * 17 15 13 20 20 H 1.48500 * 109.47394 * 27.06144 * 17 15 13 21 21 C 1.53002 * 117.51791 * 83.03637 * 12 11 10 22 22 C 1.53000 * 60.00177 * 107.48047 * 21 12 11 23 23 C 1.53072 * 108.42257 * 67.53270 * 6 5 3 24 24 C 1.50177 * 109.88643 * 311.08301 * 23 6 5 25 25 O 1.21284 * 118.24435 * 197.62350 * 24 23 6 26 26 N 1.33351 * 123.50638 * 17.62250 * 24 23 6 27 27 H 1.08997 * 109.46720 * 60.00372 * 1 2 3 28 28 H 1.08995 * 109.47137 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47289 * 300.00180 * 1 2 3 30 30 H 1.08994 * 109.47444 * 239.99810 * 2 1 3 31 31 H 1.09006 * 109.46793 * 119.99880 * 2 1 3 32 32 H 1.09003 * 109.60107 * 69.38528 * 5 3 2 33 33 H 1.08997 * 109.60513 * 308.89700 * 5 3 2 34 34 H 0.96995 * 119.99658 * 4.63156 * 10 8 6 35 35 H 1.08991 * 109.47331 * 64.71966 * 11 10 8 36 36 H 1.08999 * 109.46963 * 304.71570 * 11 10 8 37 37 H 0.97000 * 119.99836 * 180.02562 * 16 15 13 38 38 H 1.09000 * 117.49973 * 214.97149 * 21 12 11 39 39 H 1.09002 * 117.50202 * 359.97438 * 21 12 11 40 40 H 1.08997 * 117.49952 * 252.51078 * 22 21 12 41 41 H 1.08994 * 117.49645 * 107.48436 * 22 21 12 42 42 H 1.08996 * 109.40051 * 71.23178 * 23 6 5 43 43 H 1.09004 * 109.40066 * 190.97351 * 23 6 5 44 44 H 0.97004 * 117.94292 * 177.75270 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6096 1.9768 -0.8469 5 6 3.5640 1.4398 -0.1257 6 6 4.0783 2.8659 0.1051 7 1 5.1465 2.9097 -0.1075 8 6 3.3419 3.8229 -0.7965 9 8 2.3772 4.4282 -0.3796 10 7 3.7554 4.0062 -2.0661 11 6 3.1038 5.0099 -2.9111 12 6 3.6777 4.9347 -4.3274 13 6 5.1477 5.2427 -4.4502 14 1 5.8727 4.4435 -4.4035 15 6 5.5671 6.5449 -4.6222 16 7 6.8495 6.8127 -4.7378 17 14 4.3140 7.9284 -4.6911 18 1 3.9419 8.1894 -6.1048 19 1 4.9004 9.1573 -4.0986 20 1 3.1034 7.5384 -3.9245 21 6 3.0956 3.8801 -5.2708 22 6 2.7679 5.3596 -5.4818 23 6 3.8275 3.2397 1.5681 24 6 2.4091 2.9176 1.9418 25 8 1.9460 3.4345 2.9364 26 7 1.6315 2.0937 1.2383 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 3.8480 1.1056 -1.1236 33 1 3.9914 0.7714 0.6218 34 1 4.4845 3.4734 -2.4204 35 1 3.2823 6.0030 -2.4990 36 1 2.0314 4.8172 -2.9429 37 1 7.1446 7.7288 -4.8585 38 1 3.7760 3.4092 -5.9804 39 1 2.3039 3.2394 -4.8825 40 1 1.7604 5.6925 -5.2323 41 1 3.2327 5.8620 -6.3301 42 1 4.5075 2.6766 2.2074 43 1 4.0043 4.3066 1.7046 44 1 0.7378 1.9169 1.5716 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431143911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:17 Heat of formation + Delta-G solvation = -89.835250 kcal Electronic energy + Delta-G solvation = -24783.681008 eV Core-core repulsion = 21313.892109 eV Total energy + Delta-G solvation = -3469.788899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.99845 -40.17000 -38.75600 -37.87914 -35.02567 -34.76089 -34.19788 -32.94832 -30.00421 -28.71044 -27.42002 -25.77521 -24.07773 -23.33181 -22.53812 -21.72613 -21.13233 -19.88233 -18.50095 -18.20165 -17.57264 -17.29180 -16.96383 -16.59715 -16.38367 -16.07657 -15.41178 -15.27339 -14.83576 -14.73959 -14.63322 -14.52305 -14.34532 -14.08742 -13.71509 -13.44682 -13.10568 -12.95883 -12.86905 -12.66879 -12.32370 -12.19946 -12.11718 -11.97317 -11.83293 -11.71868 -11.55872 -10.98722 -10.87846 -10.73923 -10.65690 -10.28238 -10.01960 -9.85377 -8.29699 -6.34832 1.31673 1.39584 1.48136 1.66617 1.74151 2.28422 2.35739 2.42897 3.06525 3.24278 3.55154 3.60417 3.61353 3.77979 4.02564 4.06267 4.21409 4.23806 4.37768 4.42231 4.46692 4.54371 4.55520 4.60784 4.76208 4.78895 4.84998 4.87254 4.88911 4.96322 5.09661 5.11171 5.13727 5.27449 5.29799 5.41017 5.49849 5.60875 5.71426 5.86789 6.29890 6.42810 6.71877 6.78219 7.26292 7.35410 7.38026 8.84476 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019920 B = 0.004462 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.283867 B = 6273.103858 C = 6815.948333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.125 4.125 3 C 0.132 3.868 4 H 0.054 0.946 5 C -0.115 4.115 6 C -0.107 4.107 7 H 0.137 0.863 8 C 0.504 3.496 9 O -0.588 6.588 10 N -0.696 5.696 11 C 0.167 3.833 12 C -0.038 4.038 13 C -0.474 4.474 14 H 0.054 0.946 15 C 0.031 3.969 16 N -0.941 5.941 17 Si 0.922 3.078 18 H -0.271 1.271 19 H -0.305 1.305 20 H -0.245 1.245 21 C -0.146 4.146 22 C -0.199 4.199 23 C -0.116 4.116 24 C 0.530 3.470 25 O -0.620 6.620 26 N -0.701 5.701 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.413 0.587 35 H 0.029 0.971 36 H 0.052 0.948 37 H 0.264 0.736 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.142 0.858 43 H 0.082 0.918 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 -17.122 6.601 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.163 4.163 3 C 0.028 3.972 4 H 0.072 0.928 5 C -0.153 4.153 6 C -0.129 4.129 7 H 0.155 0.845 8 C 0.291 3.709 9 O -0.469 6.469 10 N -0.346 5.346 11 C 0.042 3.958 12 C -0.039 4.039 13 C -0.511 4.511 14 H 0.072 0.928 15 C -0.167 4.167 16 N -0.581 5.581 17 Si 0.749 3.251 18 H -0.196 1.196 19 H -0.233 1.233 20 H -0.168 1.168 21 C -0.183 4.183 22 C -0.237 4.237 23 C -0.156 4.156 24 C 0.319 3.681 25 O -0.504 6.504 26 N -0.351 5.351 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.250 0.750 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.160 0.840 43 H 0.101 0.899 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.939 -16.245 7.233 19.474 hybrid contribution -0.333 1.407 -0.354 1.488 sum -8.272 -14.839 6.879 18.328 Atomic orbital electron populations 1.21825 0.95863 1.02650 1.01299 1.21880 0.96206 0.93535 1.04657 1.21216 0.96315 0.94357 0.85359 0.92799 1.22028 0.92963 0.93515 1.06768 1.21551 1.03268 0.95481 0.92557 0.84471 1.21188 0.84179 0.83005 0.82528 1.90704 1.29506 1.51244 1.75467 1.45816 1.37749 1.39068 1.11927 1.20783 0.94629 0.90346 0.90003 1.19463 0.93124 1.03439 0.87840 1.20352 0.89425 0.92844 1.48507 0.92774 1.25600 0.95975 1.00919 0.94226 1.69989 1.15946 1.20492 1.51627 0.86151 0.81102 0.78867 0.79011 1.19610 1.23277 1.16821 1.22859 1.02365 0.90429 1.02651 1.22993 0.99776 0.99682 1.01249 1.21537 0.93159 1.04314 0.96563 1.20346 0.89466 0.76700 0.81609 1.90685 1.75692 1.53685 1.30376 1.45515 1.17546 1.46541 1.25463 0.93133 0.90842 0.93608 0.88252 0.90035 0.86650 0.86604 0.75025 0.95286 0.92975 0.92736 0.89303 0.87933 0.88929 0.90478 0.83994 0.89945 0.76987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.75 71.98 0.70 -1.32 16 2 C -0.12 -1.41 5.57 30.59 0.17 -1.24 16 3 C 0.13 2.32 2.38 45.10 0.11 2.43 16 4 H 0.05 1.22 7.27 -2.39 -0.02 1.21 16 5 C -0.12 -1.53 4.93 30.68 0.15 -1.38 16 6 C -0.11 -2.16 3.07 -11.40 -0.03 -2.20 16 7 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 8 C 0.50 15.51 5.63 87.66 0.49 16.00 16 9 O -0.59 -23.35 14.59 -3.04 -0.04 -23.40 16 10 N -0.70 -22.33 5.46 -463.07 -2.53 -24.85 16 11 C 0.17 6.46 5.19 86.38 0.45 6.91 16 12 C -0.04 -1.50 0.86 -52.93 -0.05 -1.55 16 13 C -0.47 -23.54 9.07 25.60 0.23 -23.31 16 14 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 15 C 0.03 1.69 5.47 84.66 0.46 2.15 16 16 N -0.94 -55.18 13.96 21.45 0.30 -54.88 16 17 Si 0.92 43.32 24.85 68.60 1.71 45.02 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.31 -14.82 7.11 99.48 0.71 -14.12 16 20 H -0.24 -10.90 5.71 99.48 0.57 -10.34 16 21 C -0.15 -4.81 9.95 30.59 0.30 -4.50 16 22 C -0.20 -7.40 7.48 30.60 0.23 -7.17 16 23 C -0.12 -2.72 5.21 29.71 0.15 -2.57 16 24 C 0.53 15.85 6.38 87.71 0.56 16.41 16 25 O -0.62 -24.42 17.78 -3.04 -0.05 -24.48 16 26 N -0.70 -16.71 4.91 -446.65 -2.20 -18.90 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.04 0.65 6.62 -2.38 -0.02 0.63 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.41 11.87 8.25 -92.71 -0.76 11.11 16 35 H 0.03 1.30 6.80 -2.39 -0.02 1.28 16 36 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 37 H 0.26 14.82 8.31 -92.71 -0.77 14.04 16 38 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.08 3.07 7.14 -2.39 -0.02 3.06 16 42 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.08 2.34 8.10 -2.38 -0.02 2.32 16 44 H 0.39 9.25 6.97 -92.70 -0.65 8.60 16 Total: -1.00 -74.32 347.56 0.58 -73.74 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.54 Total: 29.08 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 3.94 Total: -1.33 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -4.42 Total: -98.64 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.10 Total: -47.87 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.71 Total: 45.02 kcal Total: -74.32 0.58 -73.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431143911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.098 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds