Wall clock time and date at job start Tue Mar 31 2020 07:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46605 * 2 1 4 4 H 1.08994 * 109.30446 * 54.58447 * 3 2 1 5 5 C 1.52925 * 109.30012 * 173.96431 * 3 2 1 6 6 C 1.53350 * 108.68647 * 171.04684 * 5 3 2 7 7 H 1.08997 * 109.68951 * 52.20918 * 6 5 3 8 8 C 1.50694 * 109.66390 * 172.74279 * 6 5 3 9 9 O 1.21286 * 119.99982 * 33.07473 * 8 6 5 10 10 N 1.34776 * 120.00434 * 213.06467 * 8 6 5 11 11 C 1.46491 * 120.00489 * 185.37406 * 10 8 6 12 12 C 1.52998 * 109.47468 * 185.47353 * 11 10 8 13 13 C 1.50700 * 115.54561 * 64.77398 * 12 11 10 14 14 H 1.08002 * 120.00056 * 268.89542 * 13 12 11 15 15 C 1.37876 * 120.00037 * 88.90164 * 13 12 11 16 16 N 1.31520 * 120.00087 * 179.91642 * 15 13 12 17 17 Si 1.86801 * 119.99989 * 359.91936 * 15 13 12 18 18 H 1.48500 * 109.47290 * 88.03334 * 17 15 13 19 19 H 1.48498 * 109.46981 * 208.03209 * 17 15 13 20 20 H 1.48494 * 109.46919 * 328.02790 * 17 15 13 21 21 C 1.53001 * 117.50151 * 279.11038 * 12 11 10 22 22 C 1.53001 * 117.50198 * 210.44661 * 12 11 10 23 23 C 1.53066 * 108.41513 * 292.46845 * 6 5 3 24 24 C 1.50175 * 109.89182 * 48.91461 * 23 6 5 25 25 O 1.21279 * 118.24867 * 162.41888 * 24 23 6 26 26 N 1.33357 * 123.50883 * 342.39611 * 24 23 6 27 27 H 1.09002 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46823 * 299.99659 * 1 2 3 29 29 H 1.08998 * 109.47052 * 60.00357 * 1 2 3 30 30 H 1.08993 * 109.47167 * 239.99771 * 2 1 3 31 31 H 1.08998 * 109.47052 * 119.99643 * 2 1 3 32 32 H 1.08997 * 109.60331 * 290.82067 * 5 3 2 33 33 H 1.09004 * 109.60012 * 51.13990 * 5 3 2 34 34 H 0.96999 * 119.99363 * 5.37763 * 10 8 6 35 35 H 1.08999 * 109.47270 * 305.47544 * 11 10 8 36 36 H 1.08999 * 109.46955 * 65.47649 * 11 10 8 37 37 H 0.96998 * 120.00079 * 179.97438 * 16 15 13 38 38 H 1.08999 * 117.49265 * 359.97438 * 21 12 11 39 39 H 1.08991 * 117.50252 * 145.01567 * 21 12 11 40 40 H 1.09004 * 117.49582 * 214.98324 * 22 12 11 41 41 H 1.08991 * 117.49754 * 359.97389 * 22 12 11 42 42 H 1.08998 * 109.40130 * 288.79178 * 23 6 5 43 43 H 1.08994 * 109.40121 * 169.04407 * 23 6 5 44 44 H 0.97004 * 117.94667 * 182.24184 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9809 0.8383 5 6 3.5617 1.4407 0.1518 6 6 4.0796 2.8663 -0.0742 7 1 3.5360 3.5604 0.5668 8 6 5.5513 2.9275 0.2439 9 8 6.2581 1.9650 0.0316 10 7 6.0823 4.0518 0.7640 11 6 7.5300 4.1540 0.9634 12 6 7.8541 5.4628 1.6865 13 6 7.3188 5.5795 3.0904 14 1 6.3462 6.0163 3.2629 15 6 8.0707 5.1288 4.1545 16 7 7.6043 5.2322 5.3799 17 14 9.7520 4.3715 3.8559 18 1 10.7823 5.4409 3.8477 19 1 10.0561 3.3996 4.9367 20 1 9.7541 3.6718 2.5461 21 6 7.9133 6.7391 0.8447 22 6 9.2034 6.1195 1.3879 23 6 3.8537 3.2359 -1.5423 24 6 2.4420 2.9123 -1.9393 25 8 1.9962 3.4255 -2.9436 26 7 1.6525 2.0905 -1.2468 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8287 1.1092 1.1552 33 1 4.0018 0.7684 -0.5847 34 1 5.5058 4.7933 1.0063 35 1 7.8743 3.3122 1.5641 36 1 8.0319 4.1395 -0.0040 37 1 8.1331 4.9147 6.1285 38 1 7.7218 6.6461 -0.2243 39 1 7.5656 7.6631 1.3064 40 1 9.7038 6.6362 2.2070 41 1 9.8603 5.6189 0.6768 42 1 4.5443 2.6708 -2.1682 43 1 4.0329 4.3022 -1.6789 44 1 0.7646 1.9125 -1.5947 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431143912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:21 Heat of formation + Delta-G solvation = -69.166123 kcal Electronic energy + Delta-G solvation = -24087.477478 eV Core-core repulsion = 20618.584860 eV Total energy + Delta-G solvation = -3468.892618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81844 -39.16232 -37.35845 -36.96749 -33.97550 -33.48666 -32.26099 -32.16773 -29.28158 -27.22108 -25.74585 -24.88015 -23.06307 -22.01708 -21.78624 -19.88956 -19.48963 -19.08304 -17.53871 -16.91460 -16.52483 -16.36481 -15.47866 -15.25059 -15.04740 -14.83114 -14.33874 -14.08395 -13.92519 -13.79801 -13.67680 -13.29889 -12.84688 -12.80802 -12.53191 -12.22282 -12.03959 -11.70920 -11.59362 -11.29898 -11.22890 -11.15818 -11.01236 -10.84727 -10.52363 -10.24261 -10.19552 -9.74390 -9.37344 -9.27941 -9.23374 -8.70374 -8.62784 -8.39062 -6.20537 -4.25508 2.49586 2.89675 3.10607 3.24842 3.35469 3.39211 3.52292 4.28355 4.35449 4.42391 4.44098 4.66276 4.76818 4.79829 4.83856 4.96796 5.07899 5.12406 5.26556 5.30526 5.39725 5.54284 5.55795 5.62989 5.63984 5.73600 5.81760 5.87406 5.96445 6.00512 6.04403 6.15521 6.37188 6.44130 6.59128 6.65140 6.93320 7.01253 7.04641 7.15139 7.62478 8.03677 8.05547 8.35621 8.63098 8.79131 9.42463 10.90738 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.003784 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.917756 B = 7398.304445 C = 8048.000020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.138 3.862 4 H 0.080 0.920 5 C -0.114 4.114 6 C -0.110 4.110 7 H 0.099 0.901 8 C 0.513 3.487 9 O -0.552 6.552 10 N -0.698 5.698 11 C 0.154 3.846 12 C -0.016 4.016 13 C -0.491 4.491 14 H 0.078 0.922 15 C 0.080 3.920 16 N -0.895 5.895 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.294 1.294 20 H -0.259 1.259 21 C -0.179 4.179 22 C -0.194 4.194 23 C -0.123 4.123 24 C 0.527 3.473 25 O -0.560 6.560 26 N -0.714 5.714 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.404 0.596 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.896 -7.454 -9.733 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.034 3.966 4 H 0.098 0.902 5 C -0.152 4.152 6 C -0.132 4.132 7 H 0.117 0.883 8 C 0.298 3.702 9 O -0.431 6.431 10 N -0.346 5.346 11 C 0.031 3.969 12 C -0.017 4.017 13 C -0.528 4.528 14 H 0.096 0.904 15 C -0.123 4.123 16 N -0.531 5.531 17 Si 0.709 3.291 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.183 1.183 21 C -0.216 4.216 22 C -0.232 4.232 23 C -0.163 4.163 24 C 0.314 3.686 25 O -0.439 6.439 26 N -0.368 5.368 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.239 0.761 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -10.323 -7.840 -10.107 16.437 hybrid contribution 0.441 -0.100 0.201 0.495 sum -9.882 -7.940 -9.906 16.088 Atomic orbital electron populations 1.21815 0.95410 1.02202 1.01911 1.21921 0.96385 0.95460 1.03666 1.21101 0.95594 0.93643 0.86300 0.90189 1.21798 0.92807 0.95683 1.04884 1.21386 0.94878 0.99532 0.97365 0.88290 1.20224 0.89088 0.83011 0.77896 1.90673 1.62417 1.35676 1.54327 1.45902 1.09644 1.17107 1.61980 1.21167 0.79053 0.99102 0.97588 1.19629 0.96817 0.88906 0.96364 1.20169 1.04960 1.41455 0.86214 0.90381 1.24972 0.98019 0.94493 0.94811 1.69880 1.38285 1.46359 0.98618 0.86843 0.84544 0.79378 0.78361 1.20349 1.22133 1.18321 1.22866 1.02171 0.99008 0.97558 1.22958 0.91317 1.05971 1.02984 1.21580 0.93927 1.04986 0.95777 1.20038 0.87929 0.77784 0.82814 1.90761 1.74602 1.52009 1.26482 1.45690 1.18353 1.47424 1.25290 0.92195 0.92197 0.92852 0.91033 0.89955 0.89013 0.89694 0.76107 0.91406 0.93933 0.92438 0.90846 0.89350 0.89098 0.90701 0.87482 0.87455 0.76630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.76 37.16 0.36 -0.52 16 2 C -0.14 -0.89 5.57 -26.73 -0.15 -1.04 16 3 C 0.14 1.11 3.07 -68.37 -0.21 0.90 16 4 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.11 -1.16 4.12 -26.59 -0.11 -1.27 16 6 C -0.11 -1.28 2.60 -91.56 -0.24 -1.51 16 7 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 8 C 0.51 8.22 6.83 -10.99 -0.08 8.15 16 9 O -0.55 -10.75 16.37 5.55 0.09 -10.66 16 10 N -0.70 -11.91 5.45 -60.30 -0.33 -12.24 16 11 C 0.15 3.08 5.24 -4.05 -0.02 3.06 16 12 C -0.02 -0.34 0.84 -155.66 -0.13 -0.47 16 13 C -0.49 -12.51 9.31 -34.44 -0.32 -12.83 16 14 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 16 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 17 Si 0.88 21.03 24.69 -169.99 -4.20 16.84 16 18 H -0.28 -6.48 7.04 56.52 0.40 -6.08 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.26 -5.95 6.03 56.52 0.34 -5.61 16 21 C -0.18 -3.29 9.96 -26.69 -0.27 -3.56 16 22 C -0.19 -3.88 7.51 -26.69 -0.20 -4.08 16 23 C -0.12 -1.40 5.34 -28.10 -0.15 -1.55 16 24 C 0.53 6.46 7.71 -11.87 -0.09 6.36 16 25 O -0.56 -8.96 17.78 5.56 0.10 -8.87 16 26 N -0.71 -6.72 5.12 -54.86 -0.28 -7.00 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.29 6.67 -51.93 -0.35 -0.05 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.93 8.06 -51.93 -0.42 0.52 16 34 H 0.40 6.32 8.43 -40.82 -0.34 5.98 16 35 H 0.07 1.53 6.95 -51.93 -0.36 1.17 16 36 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.09 1.92 6.94 -51.93 -0.36 1.56 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.11 1.26 8.09 -51.93 -0.42 0.84 16 43 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.40 3.37 7.04 -40.82 -0.29 3.08 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -31.95 353.05 -7.45 -39.40 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.23 Total: 8.63 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.70 Total: -6.27 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.16 Total: -44.39 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.19 Total: -19.52 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.20 Total: 16.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.95 -7.45 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431143912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.766 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds