Wall clock time and date at job start Tue Mar 31 2020 07:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46605 * 2 1 4 4 H 1.08994 * 109.30446 * 54.58447 * 3 2 1 5 5 C 1.52925 * 109.30012 * 173.96431 * 3 2 1 6 6 C 1.53350 * 108.68647 * 171.04684 * 5 3 2 7 7 H 1.08997 * 109.68951 * 52.20918 * 6 5 3 8 8 C 1.50694 * 109.66390 * 172.74279 * 6 5 3 9 9 O 1.21286 * 119.99982 * 33.07473 * 8 6 5 10 10 N 1.34776 * 120.00434 * 213.06467 * 8 6 5 11 11 C 1.46491 * 120.00489 * 185.37406 * 10 8 6 12 12 C 1.52998 * 109.47468 * 185.47353 * 11 10 8 13 13 C 1.50700 * 115.54561 * 64.77398 * 12 11 10 14 14 H 1.08002 * 120.00056 * 268.89542 * 13 12 11 15 15 C 1.37876 * 120.00037 * 88.90164 * 13 12 11 16 16 N 1.31520 * 120.00087 * 179.91642 * 15 13 12 17 17 Si 1.86801 * 119.99989 * 359.91936 * 15 13 12 18 18 H 1.48500 * 109.47290 * 88.03334 * 17 15 13 19 19 H 1.48498 * 109.46981 * 208.03209 * 17 15 13 20 20 H 1.48494 * 109.46919 * 328.02790 * 17 15 13 21 21 C 1.53001 * 117.50151 * 279.11038 * 12 11 10 22 22 C 1.53001 * 117.50198 * 210.44661 * 12 11 10 23 23 C 1.53066 * 108.41513 * 292.46845 * 6 5 3 24 24 C 1.50175 * 109.89182 * 48.91461 * 23 6 5 25 25 O 1.21279 * 118.24867 * 162.41888 * 24 23 6 26 26 N 1.33357 * 123.50883 * 342.39611 * 24 23 6 27 27 H 1.09002 * 109.46765 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46823 * 299.99659 * 1 2 3 29 29 H 1.08998 * 109.47052 * 60.00357 * 1 2 3 30 30 H 1.08993 * 109.47167 * 239.99771 * 2 1 3 31 31 H 1.08998 * 109.47052 * 119.99643 * 2 1 3 32 32 H 1.08997 * 109.60331 * 290.82067 * 5 3 2 33 33 H 1.09004 * 109.60012 * 51.13990 * 5 3 2 34 34 H 0.96999 * 119.99363 * 5.37763 * 10 8 6 35 35 H 1.08999 * 109.47270 * 305.47544 * 11 10 8 36 36 H 1.08999 * 109.46955 * 65.47649 * 11 10 8 37 37 H 0.96998 * 120.00079 * 179.97438 * 16 15 13 38 38 H 1.08999 * 117.49265 * 359.97438 * 21 12 11 39 39 H 1.08991 * 117.50252 * 145.01567 * 21 12 11 40 40 H 1.09004 * 117.49582 * 214.98324 * 22 12 11 41 41 H 1.08991 * 117.49754 * 359.97389 * 22 12 11 42 42 H 1.08998 * 109.40130 * 288.79178 * 23 6 5 43 43 H 1.08994 * 109.40121 * 169.04407 * 23 6 5 44 44 H 0.97004 * 117.94667 * 182.24184 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9809 0.8383 5 6 3.5617 1.4407 0.1518 6 6 4.0796 2.8663 -0.0742 7 1 3.5360 3.5604 0.5668 8 6 5.5513 2.9275 0.2439 9 8 6.2581 1.9650 0.0316 10 7 6.0823 4.0518 0.7640 11 6 7.5300 4.1540 0.9634 12 6 7.8541 5.4628 1.6865 13 6 7.3188 5.5795 3.0904 14 1 6.3462 6.0163 3.2629 15 6 8.0707 5.1288 4.1545 16 7 7.6043 5.2322 5.3799 17 14 9.7520 4.3715 3.8559 18 1 10.7823 5.4409 3.8477 19 1 10.0561 3.3996 4.9367 20 1 9.7541 3.6718 2.5461 21 6 7.9133 6.7391 0.8447 22 6 9.2034 6.1195 1.3879 23 6 3.8537 3.2359 -1.5423 24 6 2.4420 2.9123 -1.9393 25 8 1.9962 3.4255 -2.9436 26 7 1.6525 2.0905 -1.2468 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8287 1.1092 1.1552 33 1 4.0018 0.7684 -0.5847 34 1 5.5058 4.7933 1.0063 35 1 7.8743 3.3122 1.5641 36 1 8.0319 4.1395 -0.0040 37 1 8.1331 4.9147 6.1285 38 1 7.7218 6.6461 -0.2243 39 1 7.5656 7.6631 1.3064 40 1 9.7038 6.6362 2.2070 41 1 9.8603 5.6189 0.6768 42 1 4.5443 2.6708 -2.1682 43 1 4.0329 4.3022 -1.6789 44 1 0.7646 1.9125 -1.5947 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431143912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:20 Heat of formation + Delta-G solvation = -92.194514 kcal Electronic energy + Delta-G solvation = -24088.476064 eV Core-core repulsion = 20618.584860 eV Total energy + Delta-G solvation = -3469.891204 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80888 -40.44759 -38.79701 -38.01965 -35.07517 -34.75910 -34.18655 -33.03272 -30.05966 -28.71563 -27.45750 -25.96091 -24.04613 -23.34567 -22.68097 -21.27483 -20.82750 -20.23873 -18.61518 -18.29012 -17.87709 -17.40763 -16.95458 -16.62639 -16.36345 -15.96079 -15.43077 -15.35268 -14.92539 -14.75888 -14.71188 -14.58439 -14.37752 -14.15067 -13.79547 -13.63727 -13.09292 -12.98616 -12.66247 -12.43612 -12.32778 -12.18094 -12.06591 -11.98283 -11.83985 -11.75315 -11.58366 -11.32416 -10.97472 -10.72744 -10.61909 -10.28432 -10.11253 -9.87856 -8.29120 -6.35136 1.34297 1.40507 1.49607 1.51364 1.65605 2.22129 2.28678 2.36907 3.06515 3.21780 3.44709 3.59676 3.63625 3.71755 4.01964 4.04479 4.10245 4.20791 4.33577 4.37959 4.42412 4.50044 4.53609 4.55748 4.65663 4.76044 4.83302 4.87424 4.88813 4.95254 5.11446 5.14474 5.17876 5.27778 5.32534 5.43505 5.49944 5.58644 5.71076 5.80672 6.28134 6.29276 6.69300 6.75059 7.14706 7.31481 7.35784 8.85435 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.003784 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.917756 B = 7398.304445 C = 8048.000020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.143 3.857 4 H 0.097 0.903 5 C -0.113 4.113 6 C -0.099 4.099 7 H 0.118 0.882 8 C 0.514 3.486 9 O -0.587 6.587 10 N -0.699 5.699 11 C 0.163 3.837 12 C -0.039 4.039 13 C -0.477 4.477 14 H 0.047 0.953 15 C 0.027 3.973 16 N -0.944 5.944 17 Si 0.929 3.071 18 H -0.267 1.267 19 H -0.304 1.304 20 H -0.244 1.244 21 C -0.151 4.151 22 C -0.197 4.197 23 C -0.117 4.117 24 C 0.529 3.471 25 O -0.601 6.601 26 N -0.702 5.702 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.411 0.589 35 H 0.037 0.963 36 H 0.058 0.942 37 H 0.264 0.736 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 -7.710 -11.176 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.039 3.961 4 H 0.114 0.886 5 C -0.151 4.151 6 C -0.121 4.121 7 H 0.136 0.864 8 C 0.301 3.699 9 O -0.468 6.468 10 N -0.348 5.348 11 C 0.039 3.961 12 C -0.040 4.040 13 C -0.515 4.515 14 H 0.065 0.935 15 C -0.171 4.171 16 N -0.584 5.584 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.232 1.232 20 H -0.167 1.167 21 C -0.188 4.188 22 C -0.235 4.235 23 C -0.157 4.157 24 C 0.317 3.683 25 O -0.483 6.483 26 N -0.353 5.353 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.247 0.753 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.132 0.868 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.719 -8.101 -11.552 17.719 hybrid contribution 0.494 -0.012 0.661 0.825 sum -10.226 -8.113 -10.891 17.000 Atomic orbital electron populations 1.21814 0.94488 1.02738 1.02210 1.21894 0.97101 0.94156 1.03886 1.21188 0.94084 0.94863 0.85956 0.88557 1.21805 0.94269 0.94453 1.04585 1.21365 0.91747 1.01069 0.97885 0.86403 1.20892 0.90595 0.81878 0.76567 1.90658 1.63741 1.36767 1.55597 1.45906 1.08765 1.17884 1.62217 1.20878 0.80838 0.96926 0.97490 1.19470 0.98651 0.91013 0.94841 1.20364 1.03457 1.39137 0.88527 0.93469 1.25684 1.01313 0.95484 0.94643 1.70010 1.39873 1.48897 0.99585 0.86049 0.81165 0.78780 0.78456 1.19230 1.23199 1.16748 1.22896 1.00120 0.97019 0.98795 1.23025 0.91457 1.05779 1.03227 1.21518 0.93502 1.05417 0.95241 1.20079 0.88141 0.77733 0.82388 1.90749 1.75356 1.53889 1.28337 1.45655 1.18292 1.46178 1.25225 0.91620 0.91738 0.92712 0.91437 0.89203 0.89100 0.90574 0.75274 0.94492 0.92342 0.92716 0.87653 0.89665 0.90514 0.88320 0.87896 0.86751 0.75819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.76 71.99 0.70 -0.68 16 2 C -0.13 -1.44 5.57 30.60 0.17 -1.27 16 3 C 0.14 1.96 3.07 45.11 0.14 2.10 16 4 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 5 C -0.11 -2.12 4.12 30.69 0.13 -1.99 16 6 C -0.10 -2.13 2.60 -11.40 -0.03 -2.16 16 7 H 0.12 2.12 8.10 -2.39 -0.02 2.10 16 8 C 0.51 15.83 6.83 87.66 0.60 16.43 16 9 O -0.59 -22.42 16.37 -3.05 -0.05 -22.47 16 10 N -0.70 -22.88 5.45 -463.09 -2.52 -25.41 16 11 C 0.16 6.25 5.24 86.38 0.45 6.71 16 12 C -0.04 -1.57 0.84 -52.93 -0.04 -1.61 16 13 C -0.48 -24.41 9.31 25.60 0.24 -24.18 16 14 H 0.05 2.65 8.06 -2.91 -0.02 2.62 16 15 C 0.03 1.47 5.47 84.65 0.46 1.93 16 16 N -0.94 -56.17 13.96 21.45 0.30 -55.87 16 17 Si 0.93 43.29 24.69 68.60 1.69 44.98 16 18 H -0.27 -11.88 7.04 99.48 0.70 -11.17 16 19 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 20 H -0.24 -10.68 6.03 99.48 0.60 -10.08 16 21 C -0.15 -5.11 9.96 30.62 0.30 -4.80 16 22 C -0.20 -7.32 7.51 30.62 0.23 -7.09 16 23 C -0.12 -2.48 5.34 29.71 0.16 -2.32 16 24 C 0.53 12.18 7.71 87.71 0.68 12.85 16 25 O -0.60 -18.72 17.78 -3.03 -0.05 -18.77 16 26 N -0.70 -11.80 5.12 -446.65 -2.29 -14.09 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.47 6.67 -2.39 -0.02 0.46 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.59 8.06 -2.39 -0.02 1.57 16 34 H 0.41 12.26 8.43 -92.71 -0.78 11.48 16 35 H 0.04 1.64 6.95 -2.39 -0.02 1.62 16 36 H 0.06 2.06 8.09 -2.39 -0.02 2.04 16 37 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.08 3.08 6.94 -2.38 -0.02 3.06 16 41 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.10 2.31 8.09 -2.39 -0.02 2.29 16 43 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.40 6.03 7.04 -92.70 -0.65 5.38 16 Total: -1.00 -69.90 353.05 0.72 -69.17 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -0.54 Total: 28.53 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.19 Total: -6.07 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -4.51 Total: -95.37 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -0.10 Total: -41.25 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.69 Total: 44.98 kcal Total: -69.90 0.72 -69.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431143912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.020 kcal (2) G-P(sol) polarization free energy of solvation -69.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds