Wall clock time and date at job start Tue Mar 31 2020 07:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 H 1.09004 * 109.29619 * 55.41765 * 3 2 1 5 5 C 1.52921 * 109.29881 * 175.00071 * 3 2 1 6 6 C 1.53353 * 108.66911 * 170.86155 * 5 3 2 7 7 H 1.09005 * 109.67152 * 172.69744 * 6 5 3 8 8 C 1.50698 * 109.67339 * 52.20369 * 6 5 3 9 9 O 1.21283 * 119.99902 * 263.80205 * 8 6 5 10 10 N 1.34777 * 120.00343 * 83.80932 * 8 6 5 11 11 C 1.46493 * 120.00033 * 184.85773 * 10 8 6 12 12 C 1.53003 * 109.47049 * 183.71472 * 11 10 8 13 13 C 1.50701 * 115.55216 * 299.90269 * 12 11 10 14 14 H 1.07996 * 120.00086 * 116.99611 * 13 12 11 15 15 C 1.37873 * 119.99867 * 296.99427 * 13 12 11 16 16 N 1.31511 * 120.00022 * 173.95985 * 15 13 12 17 17 Si 1.86803 * 120.00114 * 353.96491 * 15 13 12 18 18 H 1.48498 * 109.47331 * 94.94857 * 17 15 13 19 19 H 1.48500 * 109.47075 * 334.95081 * 17 15 13 20 20 H 1.48499 * 109.47084 * 214.95388 * 17 15 13 21 21 C 1.53000 * 117.49536 * 85.57229 * 12 11 10 22 22 C 1.53000 * 117.49599 * 154.22964 * 12 11 10 23 23 C 1.53072 * 108.42313 * 292.46715 * 6 5 3 24 24 C 1.50170 * 109.89908 * 48.88704 * 23 6 5 25 25 O 1.21278 * 118.24954 * 162.41099 * 24 23 6 26 26 N 1.33363 * 123.50548 * 342.45484 * 24 23 6 27 27 H 1.09008 * 109.46627 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47014 * 299.99587 * 1 2 3 29 29 H 1.09000 * 109.46917 * 60.00015 * 1 2 3 30 30 H 1.09001 * 109.47353 * 240.00016 * 2 1 3 31 31 H 1.08992 * 109.47489 * 120.00194 * 2 1 3 32 32 H 1.08992 * 109.60722 * 51.10833 * 5 3 2 33 33 H 1.09000 * 109.60214 * 290.60999 * 5 3 2 34 34 H 0.97002 * 119.99577 * 4.86020 * 10 8 6 35 35 H 1.08999 * 109.46931 * 63.72087 * 11 10 8 36 36 H 1.08994 * 109.47424 * 303.71762 * 11 10 8 37 37 H 0.97002 * 120.00277 * 179.97438 * 16 15 13 38 38 H 1.09007 * 117.49699 * 215.00351 * 21 12 11 39 39 H 1.08995 * 117.50239 * 0.02562 * 21 12 11 40 40 H 1.08997 * 117.50353 * 359.97438 * 22 12 11 41 41 H 1.08997 * 117.49829 * 145.00236 * 22 12 11 42 42 H 1.09002 * 109.39568 * 169.03082 * 23 6 5 43 43 H 1.08995 * 109.40062 * 288.76866 * 23 6 5 44 44 H 0.96994 * 117.94287 * 182.19877 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6095 1.9768 0.8470 5 6 3.5640 1.4398 0.1258 6 6 4.0782 2.8660 -0.1050 7 1 5.1464 2.9098 0.1076 8 6 3.3418 3.8229 0.7966 9 8 2.3826 4.4351 0.3770 10 7 3.7491 3.9985 2.0693 11 6 2.9719 4.8461 2.9768 12 6 3.6948 4.9512 4.3211 13 6 3.9143 3.6477 5.0448 14 1 4.9183 3.2971 5.2333 15 6 2.8335 2.9027 5.4662 16 7 3.0204 1.7112 5.9906 17 14 1.1035 3.5856 5.2922 18 1 0.5014 3.0922 4.0276 19 1 1.1571 5.0694 5.2689 20 1 0.2767 3.1381 6.4418 21 6 4.7736 6.0271 4.4608 22 6 3.4281 6.1950 5.1712 23 6 3.8275 3.2398 -1.5681 24 6 2.4094 2.9170 -1.9422 25 8 1.9466 3.4332 -2.9373 26 7 1.6315 2.0937 -1.2383 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.9915 0.7715 -0.6217 33 1 3.8480 1.1057 1.1237 34 1 4.5570 3.5637 2.3843 35 1 1.9855 4.4075 3.1281 36 1 2.8648 5.8403 2.5431 37 1 2.2600 1.1872 6.2874 38 1 5.6421 5.7921 5.0761 39 1 4.9680 6.6604 3.5952 40 1 2.7380 6.9386 4.7727 41 1 3.4115 6.0705 6.2540 42 1 4.0042 4.3067 -1.7045 43 1 4.5075 2.6768 -2.2073 44 1 0.7379 1.9169 -1.5715 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431143913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:24 Heat of formation + Delta-G solvation = -89.436823 kcal Electronic energy + Delta-G solvation = -25168.218370 eV Core-core repulsion = 21698.446748 eV Total energy + Delta-G solvation = -3469.771622 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.02216 -40.19398 -38.73010 -37.91286 -35.02447 -34.77567 -34.26243 -32.99690 -30.03706 -28.82440 -27.38811 -25.81232 -24.11873 -23.21913 -22.60908 -21.77071 -21.13935 -19.92691 -18.57643 -18.23725 -17.58787 -17.31090 -17.07259 -16.55093 -16.40363 -16.07123 -15.46329 -15.25017 -14.95835 -14.80057 -14.73376 -14.43879 -14.36860 -14.06560 -13.83886 -13.52228 -13.04885 -12.93702 -12.89741 -12.66089 -12.40310 -12.20508 -12.15365 -12.08351 -11.90464 -11.78130 -11.47196 -11.05556 -10.85495 -10.74395 -10.68837 -10.31213 -10.07049 -9.87415 -8.30594 -6.32356 1.27791 1.36991 1.46010 1.64888 1.72349 2.27384 2.32998 2.38872 2.99850 3.34241 3.51664 3.56880 3.59828 3.74124 3.99392 4.04875 4.12568 4.18927 4.30549 4.38516 4.46486 4.48778 4.53931 4.60531 4.70909 4.76165 4.80734 4.84108 4.91540 4.91728 5.03760 5.05008 5.06743 5.18559 5.25548 5.30639 5.50373 5.59647 5.70297 5.81034 6.32370 6.40955 6.69625 6.78287 7.23720 7.34663 7.36174 8.83086 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.005872 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.340833 B = 4766.950988 C = 5680.363991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.127 4.127 3 C 0.133 3.867 4 H 0.037 0.963 5 C -0.117 4.117 6 C -0.104 4.104 7 H 0.148 0.852 8 C 0.501 3.499 9 O -0.589 6.589 10 N -0.695 5.695 11 C 0.162 3.838 12 C -0.040 4.040 13 C -0.471 4.471 14 H 0.053 0.947 15 C 0.047 3.953 16 N -0.931 5.931 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.235 1.235 20 H -0.299 1.299 21 C -0.152 4.152 22 C -0.189 4.189 23 C -0.111 4.111 24 C 0.528 3.472 25 O -0.617 6.617 26 N -0.701 5.701 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.415 0.585 35 H 0.026 0.974 36 H 0.054 0.946 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.146 0.854 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 -3.108 -11.118 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.165 4.165 3 C 0.028 3.972 4 H 0.055 0.945 5 C -0.155 4.155 6 C -0.125 4.125 7 H 0.166 0.834 8 C 0.289 3.711 9 O -0.470 6.470 10 N -0.345 5.345 11 C 0.038 3.962 12 C -0.042 4.042 13 C -0.508 4.508 14 H 0.071 0.929 15 C -0.153 4.153 16 N -0.570 5.570 17 Si 0.735 3.265 18 H -0.217 1.217 19 H -0.158 1.158 20 H -0.226 1.226 21 C -0.189 4.189 22 C -0.228 4.228 23 C -0.151 4.151 24 C 0.318 3.682 25 O -0.501 6.501 26 N -0.351 5.351 27 H 0.095 0.905 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.252 0.748 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.164 0.836 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.903 -2.530 -11.684 12.302 hybrid contribution -1.510 0.016 0.691 1.660 sum 1.393 -2.514 -10.993 11.362 Atomic orbital electron populations 1.21821 0.95911 1.02788 1.01048 1.21879 0.96290 0.93828 1.04487 1.21096 0.96762 0.94166 0.85184 0.94513 1.21998 0.92578 0.94729 1.06189 1.21541 1.03687 0.94395 0.92912 0.83395 1.21259 0.84472 0.82708 0.82691 1.90697 1.30447 1.50199 1.75649 1.45834 1.29116 1.49430 1.10145 1.20777 0.93177 0.93077 0.89204 1.19491 1.01217 0.90350 0.93097 1.20314 0.93262 1.02240 1.34999 0.92876 1.25360 1.01303 0.94302 0.94348 1.69975 1.32089 1.11538 1.43375 0.86392 0.82013 0.81861 0.76237 1.21734 1.15785 1.22602 1.22844 0.92228 1.01595 1.02275 1.23074 0.99940 1.00997 0.98756 1.21542 0.92661 1.04867 0.95982 1.20484 0.89722 0.76485 0.81542 1.90679 1.75756 1.53525 1.30137 1.45518 1.17672 1.46777 1.25109 0.90510 0.94372 0.92760 0.88985 0.89511 0.85934 0.88200 0.74818 0.95553 0.92811 0.92648 0.89287 0.88433 0.89613 0.90031 0.88833 0.83592 0.77102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.75 71.98 0.70 -2.51 16 2 C -0.13 -2.43 5.57 30.60 0.17 -2.26 16 3 C 0.13 3.28 2.39 45.11 0.11 3.39 16 4 H 0.04 1.22 7.28 -2.38 -0.02 1.21 16 5 C -0.12 -2.22 4.93 30.69 0.15 -2.07 16 6 C -0.10 -2.21 3.07 -11.40 -0.03 -2.24 16 7 H 0.15 1.99 8.14 -2.38 -0.02 1.97 16 8 C 0.50 16.17 5.62 87.66 0.49 16.66 16 9 O -0.59 -24.14 14.64 -3.04 -0.04 -24.18 16 10 N -0.70 -23.46 5.44 -463.08 -2.52 -25.98 16 11 C 0.16 6.43 5.14 86.38 0.44 6.87 16 12 C -0.04 -1.63 0.91 -52.93 -0.05 -1.68 16 13 C -0.47 -22.99 8.93 25.60 0.23 -22.77 16 14 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 15 C 0.05 2.44 5.46 84.65 0.46 2.90 16 16 N -0.93 -52.39 13.96 21.45 0.30 -52.09 16 17 Si 0.91 42.60 24.83 68.60 1.70 44.31 16 18 H -0.29 -14.03 7.06 99.48 0.70 -13.33 16 19 H -0.24 -10.29 5.85 99.48 0.58 -9.71 16 20 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 21 C -0.15 -5.16 9.95 30.62 0.30 -4.85 16 22 C -0.19 -7.06 8.28 30.62 0.25 -6.80 16 23 C -0.11 -2.49 5.20 29.71 0.15 -2.34 16 24 C 0.53 16.34 6.39 87.71 0.56 16.90 16 25 O -0.62 -24.33 17.78 -3.02 -0.05 -24.38 16 26 N -0.70 -19.33 4.92 -446.64 -2.20 -21.52 16 27 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 1.06 6.62 -2.39 -0.02 1.05 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.12 1.49 8.10 -2.39 -0.02 1.47 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.41 12.71 8.17 -92.71 -0.76 11.96 16 35 H 0.03 1.19 4.80 -2.39 -0.01 1.18 16 36 H 0.05 2.08 8.09 -2.39 -0.02 2.06 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.09 2.98 8.14 -2.38 -0.02 2.96 16 39 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 43 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.39 10.71 6.96 -92.71 -0.65 10.06 16 Total: -1.00 -71.30 347.25 0.61 -70.69 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.52 Total: 33.97 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 3.95 Total: -0.80 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -4.42 Total: -99.60 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -0.10 Total: -48.57 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.70 Total: 44.31 kcal Total: -71.30 0.61 -70.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431143913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.751 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds