Wall clock time and date at job start Tue Mar 31 2020 07:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46823 * 2 1 4 4 H 1.08998 * 109.29574 * 304.57900 * 3 2 1 5 5 C 1.52925 * 109.29668 * 184.99759 * 3 2 1 6 6 C 1.53347 * 108.66916 * 188.93275 * 5 3 2 7 7 H 1.08997 * 109.67643 * 307.80006 * 6 5 3 8 8 C 1.50699 * 109.67063 * 187.26512 * 6 5 3 9 9 O 1.21284 * 119.99883 * 325.32326 * 8 6 5 10 10 N 1.34775 * 120.00024 * 145.32431 * 8 6 5 11 11 C 1.46500 * 120.00084 * 185.22519 * 10 8 6 12 12 C 1.53002 * 109.47068 * 183.37759 * 11 10 8 13 13 C 1.50700 * 115.55100 * 293.77817 * 12 11 10 14 14 H 1.07999 * 119.99448 * 94.00078 * 13 12 11 15 15 C 1.37877 * 120.00013 * 274.00296 * 13 12 11 16 16 N 1.31512 * 120.00429 * 8.27758 * 15 13 12 17 17 Si 1.86799 * 119.99725 * 188.27445 * 15 13 12 18 18 H 1.48500 * 109.47451 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47126 * 119.99928 * 17 15 13 20 20 H 1.48499 * 109.47396 * 239.99928 * 17 15 13 21 21 C 1.52995 * 117.49742 * 148.11282 * 12 11 10 22 22 C 1.53003 * 117.49858 * 79.45438 * 12 11 10 23 23 C 1.53070 * 108.42576 * 67.53524 * 6 5 3 24 24 C 1.50187 * 109.88866 * 311.09398 * 23 6 5 25 25 O 1.21279 * 118.24185 * 197.55967 * 24 23 6 26 26 N 1.33350 * 123.50503 * 17.58786 * 24 23 6 27 27 H 1.09005 * 109.46786 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47221 * 299.99975 * 1 2 3 29 29 H 1.08994 * 109.47124 * 60.00268 * 1 2 3 30 30 H 1.08993 * 109.47555 * 239.99656 * 2 1 3 31 31 H 1.09005 * 109.46522 * 119.99321 * 2 1 3 32 32 H 1.08998 * 109.60289 * 308.68536 * 5 3 2 33 33 H 1.08995 * 109.60147 * 69.01422 * 5 3 2 34 34 H 0.96996 * 119.99982 * 5.22504 * 10 8 6 35 35 H 1.08997 * 109.47162 * 303.38004 * 11 10 8 36 36 H 1.09006 * 109.47231 * 63.37918 * 11 10 8 37 37 H 0.96997 * 120.00389 * 185.00764 * 16 15 13 38 38 H 1.09000 * 117.50419 * 359.97438 * 21 12 11 39 39 H 1.09004 * 117.50238 * 145.02171 * 21 12 11 40 40 H 1.08994 * 117.49427 * 214.97774 * 22 12 11 41 41 H 1.09001 * 117.49516 * 359.97438 * 22 12 11 42 42 H 1.08998 * 109.40237 * 71.22182 * 23 6 5 43 43 H 1.09002 * 109.40257 * 191.05469 * 23 6 5 44 44 H 0.97005 * 117.93848 * 177.77584 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6095 1.9767 -0.8470 5 6 3.5640 1.4398 -0.1257 6 6 4.0778 2.8669 0.0999 7 1 3.5449 3.5566 -0.5546 8 6 5.5547 2.9267 -0.1934 9 8 6.2630 1.9764 0.0639 10 7 6.0885 4.0362 -0.7416 11 6 7.5003 4.0537 -1.1323 12 6 7.8702 5.4468 -1.6455 13 6 7.1987 5.8667 -2.9276 14 1 6.2850 6.4415 -2.8954 15 6 7.7507 5.5168 -4.1417 16 7 8.7672 4.6835 -4.1862 17 14 7.0548 6.2264 -5.7233 18 1 5.9224 7.1322 -5.4033 19 1 8.1137 6.9898 -6.4314 20 1 6.5755 5.1220 -6.5926 21 6 9.3020 5.9304 -1.4068 22 6 8.1464 6.5331 -0.6040 23 6 3.8269 3.2460 1.5616 24 6 2.4086 2.9244 1.9367 25 8 1.9459 3.4437 2.9301 26 7 1.6312 2.0980 1.2360 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.9916 0.7744 0.6242 33 1 3.8482 1.0994 -1.1214 34 1 5.5379 4.8231 -0.8774 35 1 8.1192 3.8082 -0.2693 36 1 7.6684 3.3197 -1.9205 37 1 9.2020 4.4936 -5.0322 38 1 9.9803 5.2564 -0.8838 39 1 9.7581 6.5527 -2.1768 40 1 7.8426 7.5514 -0.8463 41 1 8.0641 6.2553 0.4468 42 1 4.5070 2.6853 2.2029 43 1 4.0019 4.3137 1.6940 44 1 0.7376 1.9222 1.5699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431143914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:29 Heat of formation + Delta-G solvation = -74.035517 kcal Electronic energy + Delta-G solvation = -24021.582578 eV Core-core repulsion = 20552.478807 eV Total energy + Delta-G solvation = -3469.103771 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.77589 -39.03951 -37.22719 -36.69610 -33.92399 -33.32033 -32.23048 -32.02328 -29.25733 -26.93676 -25.62770 -24.86352 -22.99655 -21.99185 -21.23284 -19.78544 -19.49100 -19.13331 -17.50757 -16.81318 -16.49115 -16.14354 -15.39920 -15.04451 -14.89906 -14.70120 -14.31058 -14.08198 -13.97259 -13.73262 -13.45504 -13.33827 -12.91951 -12.64451 -12.20566 -11.80510 -11.69536 -11.64433 -11.56068 -11.28179 -11.14338 -11.12165 -10.96896 -10.91803 -10.56264 -10.32118 -10.15032 -9.72101 -9.28919 -9.25214 -8.99162 -8.52723 -8.33899 -8.16532 -6.15313 -4.23099 2.52730 2.98732 3.14219 3.20724 3.30564 3.32534 3.65345 4.31011 4.31255 4.45178 4.50780 4.71884 4.78037 4.83275 4.98185 5.12701 5.14023 5.24513 5.29948 5.34785 5.45928 5.58217 5.60744 5.63489 5.77172 5.83362 5.88425 5.97973 6.07399 6.28748 6.41194 6.51655 6.61391 6.65355 6.81732 7.04031 7.17499 7.19627 7.37012 7.41942 7.75370 8.07709 8.19738 8.27786 8.74867 8.79699 9.44646 10.93364 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.003800 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.850680 B = 7365.793017 C = 8082.279215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.139 3.861 4 H 0.079 0.921 5 C -0.113 4.113 6 C -0.111 4.111 7 H 0.097 0.903 8 C 0.511 3.489 9 O -0.554 6.554 10 N -0.700 5.700 11 C 0.161 3.839 12 C 0.027 3.973 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.074 3.926 16 N -0.872 5.872 17 Si 0.887 3.113 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.149 4.149 22 C -0.210 4.210 23 C -0.123 4.123 24 C 0.527 3.473 25 O -0.560 6.560 26 N -0.715 5.715 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.401 0.599 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 -6.637 6.153 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.034 3.966 4 H 0.097 0.903 5 C -0.151 4.151 6 C -0.132 4.132 7 H 0.116 0.884 8 C 0.295 3.705 9 O -0.433 6.433 10 N -0.347 5.347 11 C 0.039 3.961 12 C 0.026 3.974 13 C -0.537 4.537 14 H 0.079 0.921 15 C -0.130 4.130 16 N -0.508 5.508 17 Si 0.714 3.286 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.211 1.211 21 C -0.187 4.187 22 C -0.247 4.247 23 C -0.163 4.163 24 C 0.314 3.686 25 O -0.439 6.439 26 N -0.368 5.368 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.235 0.765 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.471 -7.136 6.586 15.806 hybrid contribution -0.727 0.675 -1.081 1.467 sum -13.197 -6.461 5.505 15.691 Atomic orbital electron populations 1.21811 0.95454 1.02191 1.01881 1.21922 0.96344 0.95501 1.03669 1.21101 0.95464 0.93492 0.86547 0.90294 1.21781 0.92683 0.95755 1.04863 1.21408 0.95093 0.99346 0.97397 0.88443 1.20190 0.88968 0.83239 0.78095 1.90669 1.62341 1.36785 1.53477 1.46053 1.13506 1.14673 1.60517 1.21048 0.78607 0.99300 0.97189 1.19046 0.95861 0.88725 0.93784 1.20391 1.10053 1.34745 0.88546 0.92125 1.24962 0.95311 0.93860 0.98842 1.70025 1.22456 1.32000 1.26318 0.86634 0.79194 0.79044 0.83703 1.19692 1.20912 1.21061 1.22494 0.91776 1.03117 1.01284 1.23026 1.06990 0.99304 0.95386 1.21601 0.93681 1.04945 0.96117 1.20072 0.88163 0.77787 0.82563 1.90758 1.74114 1.51894 1.27122 1.45697 1.17984 1.47093 1.26042 0.92194 0.92847 0.92241 0.89984 0.91006 0.89685 0.89089 0.76500 0.94278 0.90898 0.92900 0.91648 0.89855 0.90301 0.91599 0.87419 0.87492 0.76669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 9.75 37.16 0.36 -0.53 16 2 C -0.14 -0.91 5.58 -26.73 -0.15 -1.06 16 3 C 0.14 1.14 3.08 -68.37 -0.21 0.93 16 4 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 5 C -0.11 -1.18 4.14 -26.59 -0.11 -1.29 16 6 C -0.11 -1.33 2.59 -91.56 -0.24 -1.57 16 7 H 0.10 1.04 8.12 -51.93 -0.42 0.61 16 8 C 0.51 8.51 6.81 -10.99 -0.07 8.43 16 9 O -0.55 -11.18 16.43 5.55 0.09 -11.09 16 10 N -0.70 -12.53 5.48 -60.29 -0.33 -12.86 16 11 C 0.16 3.49 5.51 -4.04 -0.02 3.47 16 12 C 0.03 0.60 1.37 -155.66 -0.21 0.39 16 13 C -0.50 -12.38 8.66 -34.44 -0.30 -12.68 16 14 H 0.06 1.48 7.83 -52.49 -0.41 1.07 16 15 C 0.07 1.91 5.37 -17.82 -0.10 1.81 16 16 N -0.87 -23.48 12.94 55.43 0.72 -22.77 16 17 Si 0.89 19.89 29.55 -169.99 -5.02 14.86 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.15 -3.30 9.43 -26.70 -0.25 -3.55 16 22 C -0.21 -4.22 9.96 -26.69 -0.27 -4.49 16 23 C -0.12 -1.47 5.34 -28.10 -0.15 -1.62 16 24 C 0.53 6.63 7.71 -11.87 -0.09 6.54 16 25 O -0.56 -9.14 17.78 5.56 0.10 -9.05 16 26 N -0.71 -6.89 5.12 -54.85 -0.28 -7.17 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 6.63 -51.93 -0.34 -0.05 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 6.55 8.38 -40.82 -0.34 6.21 16 35 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.07 1.82 8.14 -51.93 -0.42 1.39 16 37 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.11 1.33 8.09 -51.93 -0.42 0.91 16 43 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.40 3.44 6.98 -40.82 -0.28 3.16 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -30.47 362.13 -8.35 -38.82 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.27 Total: 9.00 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.81 Total: -5.21 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.11 Total: -42.80 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.19 Total: -20.14 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.47 -8.35 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431143914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.215 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds