Wall clock time and date at job start Tue Mar 31 2020 07:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46823 * 2 1 4 4 H 1.08998 * 109.29574 * 304.57900 * 3 2 1 5 5 C 1.52925 * 109.29668 * 184.99759 * 3 2 1 6 6 C 1.53347 * 108.66916 * 188.93275 * 5 3 2 7 7 H 1.08997 * 109.67643 * 307.80006 * 6 5 3 8 8 C 1.50699 * 109.67063 * 187.26512 * 6 5 3 9 9 O 1.21284 * 119.99883 * 325.32326 * 8 6 5 10 10 N 1.34775 * 120.00024 * 145.32431 * 8 6 5 11 11 C 1.46500 * 120.00084 * 185.22519 * 10 8 6 12 12 C 1.53002 * 109.47068 * 183.37759 * 11 10 8 13 13 C 1.50700 * 115.55100 * 293.77817 * 12 11 10 14 14 H 1.07999 * 119.99448 * 94.00078 * 13 12 11 15 15 C 1.37877 * 120.00013 * 274.00296 * 13 12 11 16 16 N 1.31512 * 120.00429 * 8.27758 * 15 13 12 17 17 Si 1.86799 * 119.99725 * 188.27445 * 15 13 12 18 18 H 1.48500 * 109.47451 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47126 * 119.99928 * 17 15 13 20 20 H 1.48499 * 109.47396 * 239.99928 * 17 15 13 21 21 C 1.52995 * 117.49742 * 148.11282 * 12 11 10 22 22 C 1.53003 * 117.49858 * 79.45438 * 12 11 10 23 23 C 1.53070 * 108.42576 * 67.53524 * 6 5 3 24 24 C 1.50187 * 109.88866 * 311.09398 * 23 6 5 25 25 O 1.21279 * 118.24185 * 197.55967 * 24 23 6 26 26 N 1.33350 * 123.50503 * 17.58786 * 24 23 6 27 27 H 1.09005 * 109.46786 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47221 * 299.99975 * 1 2 3 29 29 H 1.08994 * 109.47124 * 60.00268 * 1 2 3 30 30 H 1.08993 * 109.47555 * 239.99656 * 2 1 3 31 31 H 1.09005 * 109.46522 * 119.99321 * 2 1 3 32 32 H 1.08998 * 109.60289 * 308.68536 * 5 3 2 33 33 H 1.08995 * 109.60147 * 69.01422 * 5 3 2 34 34 H 0.96996 * 119.99982 * 5.22504 * 10 8 6 35 35 H 1.08997 * 109.47162 * 303.38004 * 11 10 8 36 36 H 1.09006 * 109.47231 * 63.37918 * 11 10 8 37 37 H 0.96997 * 120.00389 * 185.00764 * 16 15 13 38 38 H 1.09000 * 117.50419 * 359.97438 * 21 12 11 39 39 H 1.09004 * 117.50238 * 145.02171 * 21 12 11 40 40 H 1.08994 * 117.49427 * 214.97774 * 22 12 11 41 41 H 1.09001 * 117.49516 * 359.97438 * 22 12 11 42 42 H 1.08998 * 109.40237 * 71.22182 * 23 6 5 43 43 H 1.09002 * 109.40257 * 191.05469 * 23 6 5 44 44 H 0.97005 * 117.93848 * 177.77584 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6095 1.9767 -0.8470 5 6 3.5640 1.4398 -0.1257 6 6 4.0778 2.8669 0.0999 7 1 3.5449 3.5566 -0.5546 8 6 5.5547 2.9267 -0.1934 9 8 6.2630 1.9764 0.0639 10 7 6.0885 4.0362 -0.7416 11 6 7.5003 4.0537 -1.1323 12 6 7.8702 5.4468 -1.6455 13 6 7.1987 5.8667 -2.9276 14 1 6.2850 6.4415 -2.8954 15 6 7.7507 5.5168 -4.1417 16 7 8.7672 4.6835 -4.1862 17 14 7.0548 6.2264 -5.7233 18 1 5.9224 7.1322 -5.4033 19 1 8.1137 6.9898 -6.4314 20 1 6.5755 5.1220 -6.5926 21 6 9.3020 5.9304 -1.4068 22 6 8.1464 6.5331 -0.6040 23 6 3.8269 3.2460 1.5616 24 6 2.4086 2.9244 1.9367 25 8 1.9459 3.4437 2.9301 26 7 1.6312 2.0980 1.2360 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.9916 0.7744 0.6242 33 1 3.8482 1.0994 -1.1214 34 1 5.5379 4.8231 -0.8774 35 1 8.1192 3.8082 -0.2693 36 1 7.6684 3.3197 -1.9205 37 1 9.2020 4.4936 -5.0322 38 1 9.9803 5.2564 -0.8838 39 1 9.7581 6.5527 -2.1768 40 1 7.8426 7.5514 -0.8463 41 1 8.0641 6.2553 0.4468 42 1 4.5070 2.6853 2.2029 43 1 4.0019 4.3137 1.6940 44 1 0.7376 1.9222 1.5699 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431143914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:28 Heat of formation + Delta-G solvation = -94.115041 kcal Electronic energy + Delta-G solvation = -24022.453292 eV Core-core repulsion = 20552.478807 eV Total energy + Delta-G solvation = -3469.974485 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.79562 -40.39269 -38.55920 -37.99158 -35.03444 -34.72083 -33.94381 -33.02004 -30.05689 -28.48531 -27.37368 -25.95826 -24.01713 -22.96205 -22.66497 -21.33925 -20.86855 -20.23489 -18.50195 -18.21613 -17.76735 -17.38079 -16.69842 -16.55799 -16.28486 -16.01891 -15.60673 -15.23526 -14.86465 -14.78963 -14.69553 -14.35640 -14.28666 -13.80668 -13.54611 -13.42711 -13.00098 -12.97454 -12.78198 -12.43315 -12.32677 -12.30741 -12.07331 -12.03052 -11.83008 -11.75410 -11.50322 -11.30290 -10.78838 -10.66162 -10.43147 -10.10878 -10.01681 -9.82269 -8.09928 -6.21836 1.42991 1.47913 1.52159 1.56476 1.68147 2.24959 2.33353 2.45510 3.20016 3.40814 3.49782 3.62658 3.66272 3.72616 4.04024 4.09880 4.20892 4.26190 4.36254 4.50696 4.56412 4.56929 4.65545 4.66899 4.75144 4.76794 4.85903 4.94914 5.00632 5.06595 5.15330 5.18170 5.27913 5.28538 5.43975 5.58617 5.61062 5.68798 5.79938 5.81514 6.28247 6.38130 6.77162 6.86785 7.15198 7.37178 7.48466 8.98721 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.003800 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.850680 B = 7365.793017 C = 8082.279215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.133 4.133 3 C 0.144 3.856 4 H 0.099 0.901 5 C -0.112 4.112 6 C -0.098 4.098 7 H 0.120 0.880 8 C 0.512 3.488 9 O -0.590 6.590 10 N -0.697 5.697 11 C 0.178 3.822 12 C 0.007 3.993 13 C -0.502 4.502 14 H 0.065 0.935 15 C 0.027 3.973 16 N -0.906 5.906 17 Si 0.946 3.054 18 H -0.262 1.262 19 H -0.287 1.287 20 H -0.287 1.287 21 C -0.162 4.162 22 C -0.178 4.178 23 C -0.118 4.118 24 C 0.529 3.471 25 O -0.601 6.601 26 N -0.701 5.701 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.411 0.589 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.258 0.742 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.269 -6.231 6.043 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.040 3.960 4 H 0.117 0.883 5 C -0.150 4.150 6 C -0.119 4.119 7 H 0.138 0.862 8 C 0.298 3.702 9 O -0.472 6.472 10 N -0.346 5.346 11 C 0.054 3.946 12 C 0.006 3.994 13 C -0.540 4.540 14 H 0.083 0.917 15 C -0.174 4.174 16 N -0.544 5.544 17 Si 0.772 3.228 18 H -0.185 1.185 19 H -0.213 1.213 20 H -0.214 1.214 21 C -0.200 4.200 22 C -0.215 4.215 23 C -0.159 4.159 24 C 0.317 3.683 25 O -0.483 6.483 26 N -0.353 5.353 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.247 0.753 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -14.688 -6.732 6.459 17.400 hybrid contribution -0.026 0.500 -1.036 1.151 sum -14.714 -6.232 5.423 16.875 Atomic orbital electron populations 1.21810 0.94454 1.02743 1.02223 1.21897 0.97122 0.94165 1.03881 1.21199 0.93772 0.94766 0.86278 0.88341 1.21794 0.94304 0.94342 1.04601 1.21379 0.91486 1.01114 0.97962 0.86160 1.20944 0.90677 0.81955 0.76581 1.90655 1.63798 1.37959 1.54745 1.45951 1.12182 1.15705 1.60748 1.20575 0.80813 0.97688 0.95559 1.19078 0.96059 0.89846 0.94384 1.20700 1.10027 1.33865 0.89396 0.91702 1.25649 0.95716 0.94283 1.01706 1.70146 1.23985 1.33520 1.26708 0.85703 0.78607 0.78233 0.80238 1.18548 1.21294 1.21367 1.22439 0.92133 1.03664 1.01766 1.23008 1.03940 0.98721 0.95801 1.21541 0.93394 1.05317 0.95616 1.20058 0.88256 0.77801 0.82174 1.90747 1.74827 1.53791 1.28971 1.45658 1.17948 1.45790 1.25953 0.91629 0.92766 0.91623 0.89125 0.91562 0.90785 0.88986 0.75342 0.94772 0.94936 0.93260 0.91239 0.91831 0.89557 0.89439 0.88114 0.86840 0.75790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.75 71.98 0.70 -0.65 16 2 C -0.13 -1.44 5.58 30.60 0.17 -1.27 16 3 C 0.14 1.97 3.08 45.11 0.14 2.11 16 4 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 5 C -0.11 -2.15 4.14 30.69 0.13 -2.02 16 6 C -0.10 -2.18 2.59 -11.40 -0.03 -2.21 16 7 H 0.12 2.18 8.12 -2.39 -0.02 2.16 16 8 C 0.51 16.67 6.81 87.66 0.60 17.26 16 9 O -0.59 -23.96 16.43 -3.04 -0.05 -24.01 16 10 N -0.70 -24.40 5.48 -463.06 -2.54 -26.94 16 11 C 0.18 7.76 5.51 86.38 0.48 8.24 16 12 C 0.01 0.32 1.37 -52.93 -0.07 0.24 16 13 C -0.50 -24.53 8.66 25.60 0.22 -24.31 16 14 H 0.06 3.05 7.83 -2.91 -0.02 3.03 16 15 C 0.03 1.39 5.37 84.65 0.45 1.85 16 16 N -0.91 -49.64 12.94 21.45 0.28 -49.36 16 17 Si 0.95 40.58 29.55 68.60 2.03 42.61 16 18 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 19 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 21 C -0.16 -7.17 9.43 30.62 0.29 -6.88 16 22 C -0.18 -6.83 9.96 30.62 0.30 -6.52 16 23 C -0.12 -2.65 5.34 29.71 0.16 -2.49 16 24 C 0.53 12.49 7.71 87.72 0.68 13.17 16 25 O -0.60 -19.06 17.78 -3.03 -0.05 -19.11 16 26 N -0.70 -11.94 5.12 -446.63 -2.29 -14.23 16 27 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.05 0.47 6.63 -2.39 -0.02 0.45 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 1.61 8.06 -2.39 -0.02 1.59 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.41 12.72 8.38 -92.71 -0.78 11.94 16 35 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 36 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.26 13.66 8.32 -92.71 -0.77 12.89 16 38 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 40 H 0.09 3.20 8.14 -2.39 -0.02 3.19 16 41 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.10 2.43 8.09 -2.39 -0.02 2.41 16 43 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.40 6.08 6.98 -92.70 -0.65 5.43 16 Total: -1.00 -65.98 362.13 1.17 -64.81 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.42 Total: 29.73 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 4.22 Total: -3.48 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -4.55 Total: -90.54 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.10 Total: -43.13 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -65.98 1.17 -64.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431143914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.305 kcal (2) G-P(sol) polarization free energy of solvation -65.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds