Wall clock time and date at job start Tue Mar 31 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 119.99782 * 2 1 4 4 C 1.53000 * 109.46858 * 125.00220 * 3 2 1 5 5 C 1.50702 * 109.47245 * 299.99907 * 4 3 2 6 6 O 1.21283 * 120.00262 * 240.00295 * 5 4 3 7 7 N 1.34777 * 119.99928 * 59.72201 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.50694 * 109.47550 * 180.02562 * 8 7 5 10 10 O 1.21297 * 119.99707 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00262 * 180.02562 * 9 8 7 12 12 C 1.37096 * 119.99935 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00186 * 0.02562 * 12 11 9 14 14 C 1.38957 * 119.99926 * 179.97438 * 12 11 9 15 15 N 1.31403 * 119.99982 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00036 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46942 * 89.99866 * 16 14 12 18 18 H 1.48493 * 109.47274 * 210.00382 * 16 14 12 19 19 H 1.48504 * 109.47027 * 330.00265 * 16 14 12 20 20 C 1.52996 * 109.47253 * 59.99719 * 4 3 2 21 21 C 1.53000 * 109.47253 * 179.97438 * 20 4 3 22 22 C 1.52996 * 109.47166 * 300.00041 * 21 20 4 23 23 C 1.53002 * 109.47255 * 60.00105 * 22 21 20 24 24 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 25 25 H 1.08008 * 120.00327 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00138 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00306 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47139 * 5.00786 * 3 2 1 29 29 H 1.08994 * 109.47046 * 245.00077 * 3 2 1 30 30 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 31 31 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 32 32 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 33 33 H 0.96996 * 120.00282 * 0.02562 * 11 9 8 34 34 H 0.97003 * 120.00258 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47551 * 299.99874 * 20 4 3 36 36 H 1.09003 * 109.46851 * 60.00175 * 20 4 3 37 37 H 1.09004 * 109.47131 * 180.02562 * 21 20 4 38 38 H 1.09003 * 109.47049 * 60.00296 * 21 20 4 39 39 H 1.09003 * 109.47345 * 300.00074 * 22 21 20 40 40 H 1.09000 * 109.47665 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47738 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.46969 * 59.99739 * 23 22 21 43 43 H 1.08994 * 109.47089 * 300.00072 * 24 4 3 44 44 H 1.09004 * 109.47066 * 59.99996 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 6 2.2639 1.1983 2.4693 6 8 2.3205 2.0756 3.3049 7 7 1.5068 0.1053 2.6901 8 6 0.7523 -0.0231 3.9393 9 6 -0.0050 -1.3258 3.9373 10 8 0.0777 -2.0739 2.9860 11 7 -0.7742 -1.6599 4.9924 12 6 -1.4628 -2.8454 4.9906 13 1 -1.3885 -3.5118 4.1440 14 6 -2.2554 -3.1900 6.0787 15 7 -2.3454 -2.3795 7.1090 16 14 -3.1931 -4.8057 6.0767 17 1 -2.3463 -5.8702 6.6724 18 1 -4.4365 -4.6574 6.8749 19 1 -3.5419 -5.1738 4.6809 20 6 4.0245 0.1730 1.0559 21 6 4.9964 0.2013 2.2372 22 6 5.7614 1.5263 2.2365 23 6 4.7719 2.6865 2.3623 24 6 3.8004 2.6579 1.1813 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6212 1.4027 -0.9313 30 1 1.4614 -0.5964 2.0220 31 1 1.4416 -0.0052 4.7835 32 1 0.0499 0.8059 4.0264 33 1 -0.8407 -1.0616 5.7529 34 1 -2.8984 -2.6202 7.8687 35 1 3.4795 -0.7710 1.0559 36 1 4.5823 0.2705 0.1245 37 1 5.7016 -0.6250 2.1473 38 1 4.4389 0.1040 3.1688 39 1 6.3188 1.6236 1.3049 40 1 6.4535 1.5467 3.0783 41 1 5.3168 3.6305 2.3615 42 1 4.2145 2.5892 3.2940 43 1 4.3582 2.7550 0.2500 44 1 3.0958 3.4847 1.2707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451748355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:00 Heat of formation + Delta-G solvation = -78.533731 kcal Electronic energy + Delta-G solvation = -24791.268934 eV Core-core repulsion = 21321.970106 eV Total energy + Delta-G solvation = -3469.298828 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84631 -38.39908 -37.03726 -35.42821 -34.24600 -33.45741 -31.37736 -31.29726 -30.71151 -27.65019 -26.10022 -24.64952 -22.96907 -22.44209 -20.78839 -19.82960 -19.39331 -19.07364 -18.01349 -16.54529 -16.02463 -15.50116 -15.38869 -15.11982 -14.76075 -14.33975 -14.25018 -14.08955 -13.82700 -13.64893 -13.43286 -13.29499 -12.63165 -12.32035 -12.16436 -12.01680 -11.97239 -11.84880 -11.62801 -11.48005 -11.13255 -11.07400 -11.03941 -10.62695 -10.46245 -10.31419 -10.17056 -9.99788 -9.62743 -9.30441 -9.15463 -8.60659 -8.58858 -8.09185 -6.50993 -3.92866 2.36029 2.94694 3.11656 3.21626 3.26337 3.49304 3.75841 4.11691 4.50105 4.65716 4.68754 4.92347 4.99500 5.01810 5.17620 5.18668 5.21397 5.28696 5.40146 5.45809 5.50569 5.58432 5.62701 5.80380 5.83291 5.89032 5.97666 5.99196 5.99747 6.09995 6.11598 6.14886 6.21209 6.26044 6.30915 6.56017 6.74834 6.83909 6.86735 7.46171 7.92466 7.95750 8.46029 8.59337 9.05270 9.40573 9.88544 10.66009 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.003754 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.423114 B = 7456.316055 C = 7903.423418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.183 4.183 3 C -0.079 4.079 4 C -0.070 4.070 5 C 0.524 3.476 6 O -0.548 6.548 7 N -0.703 5.703 8 C 0.106 3.894 9 C 0.430 3.570 10 O -0.595 6.595 11 N -0.550 5.550 12 C -0.304 4.304 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.932 3.068 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.135 4.135 24 C -0.090 4.090 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.412 0.588 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.590 7.939 -11.591 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.201 4.201 3 C -0.117 4.117 4 C -0.073 4.073 5 C 0.310 3.690 6 O -0.427 6.427 7 N -0.360 5.360 8 C -0.022 4.022 9 C 0.216 3.784 10 O -0.482 6.482 11 N -0.185 5.185 12 C -0.434 4.434 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.536 5.536 16 Si 0.759 3.241 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.146 4.146 21 C -0.162 4.162 22 C -0.154 4.154 23 C -0.172 4.172 24 C -0.128 4.128 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.132 0.868 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.254 0.746 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.229 0.771 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.535 8.008 -11.426 18.103 hybrid contribution -0.671 -0.826 0.381 1.130 sum 10.864 7.182 -11.046 17.077 Atomic orbital electron populations 1.23953 0.95915 1.02234 0.97642 1.22876 0.96282 0.98167 1.02730 1.20782 0.97520 0.96228 0.97159 1.20839 0.95383 0.98067 0.93011 1.20330 0.79021 0.81472 0.88153 1.90587 1.64369 1.40712 1.47058 1.46090 1.46690 1.22505 1.20689 1.20942 0.95872 0.97750 0.87654 1.19755 0.85028 0.88449 0.85213 1.90482 1.68321 1.53560 1.35830 1.41798 1.40013 1.19906 1.16808 1.19718 1.22938 0.96417 1.04299 0.87715 1.25312 0.97812 0.99542 0.95033 1.69612 1.39911 1.36974 1.07053 0.85829 0.78655 0.81082 0.78560 1.20289 1.20811 1.19334 1.21657 0.96533 0.97139 0.99273 1.21579 0.98262 0.97639 0.98708 1.21530 0.97758 0.94914 1.01240 1.21796 0.97037 0.97406 1.00933 1.21329 0.97782 0.95030 0.98632 0.88925 0.87718 0.86781 0.91084 0.90072 0.74611 0.90158 0.90112 0.77104 0.91620 0.91117 0.90848 0.91769 0.91825 0.92437 0.92320 0.92563 0.88823 0.91732 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 13.90 29.02 0.40 -1.72 16 2 C -0.18 -2.22 5.80 -36.02 -0.21 -2.43 16 3 C -0.08 -0.86 4.72 -27.88 -0.13 -0.99 16 4 C -0.07 -0.84 0.50 -155.66 -0.08 -0.92 16 5 C 0.52 8.27 4.93 -10.98 -0.05 8.22 16 6 O -0.55 -10.03 13.66 5.55 0.08 -9.95 16 7 N -0.70 -11.93 4.75 -61.47 -0.29 -12.22 16 8 C 0.11 1.99 6.15 -5.20 -0.03 1.96 16 9 C 0.43 9.85 7.85 -10.99 -0.09 9.76 16 10 O -0.60 -14.95 15.24 5.54 0.08 -14.86 16 11 N -0.55 -13.65 5.29 -10.96 -0.06 -13.71 16 12 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 13 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 15 N -0.90 -23.94 13.05 55.50 0.72 -23.22 16 16 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 C -0.11 -1.18 4.38 -26.73 -0.12 -1.30 16 21 C -0.12 -1.42 5.70 -26.73 -0.15 -1.57 16 22 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 23 C -0.13 -1.58 5.63 -26.75 -0.15 -1.73 16 24 C -0.09 -1.00 4.37 -26.76 -0.12 -1.12 16 25 H 0.09 1.16 7.84 -52.48 -0.41 0.74 16 26 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.11 1.36 6.68 -52.49 -0.35 1.01 16 28 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.41 6.97 3.85 -40.82 -0.16 6.82 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.40 9.50 7.90 -40.82 -0.32 9.17 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.07 0.81 5.98 -51.93 -0.31 0.50 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.88 7.22 -51.93 -0.37 0.51 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.38 5.51 -51.93 -0.29 1.10 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -29.67 345.58 -7.18 -36.85 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -6.78 Total: 17.44 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.12 Total: -1.02 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.37 Total: -49.14 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.16 Total: -24.82 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.67 -7.18 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451748355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.685 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds