Wall clock time and date at job start Tue Mar 31 2020 06:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 119.99782 * 2 1 4 4 C 1.53000 * 109.46858 * 125.00220 * 3 2 1 5 5 C 1.50702 * 109.47245 * 299.99907 * 4 3 2 6 6 O 1.21283 * 120.00262 * 240.00295 * 5 4 3 7 7 N 1.34777 * 119.99928 * 59.72201 * 5 4 3 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.50694 * 109.47550 * 180.02562 * 8 7 5 10 10 O 1.21297 * 119.99707 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00262 * 180.02562 * 9 8 7 12 12 C 1.37096 * 119.99935 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00186 * 0.02562 * 12 11 9 14 14 C 1.38957 * 119.99926 * 179.97438 * 12 11 9 15 15 N 1.31403 * 119.99982 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00036 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46942 * 89.99866 * 16 14 12 18 18 H 1.48493 * 109.47274 * 210.00382 * 16 14 12 19 19 H 1.48504 * 109.47027 * 330.00265 * 16 14 12 20 20 C 1.52996 * 109.47253 * 59.99719 * 4 3 2 21 21 C 1.53000 * 109.47253 * 179.97438 * 20 4 3 22 22 C 1.52996 * 109.47166 * 300.00041 * 21 20 4 23 23 C 1.53002 * 109.47255 * 60.00105 * 22 21 20 24 24 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 25 25 H 1.08008 * 120.00327 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00138 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00306 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47139 * 5.00786 * 3 2 1 29 29 H 1.08994 * 109.47046 * 245.00077 * 3 2 1 30 30 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 31 31 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 32 32 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 33 33 H 0.96996 * 120.00282 * 0.02562 * 11 9 8 34 34 H 0.97003 * 120.00258 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.47551 * 299.99874 * 20 4 3 36 36 H 1.09003 * 109.46851 * 60.00175 * 20 4 3 37 37 H 1.09004 * 109.47131 * 180.02562 * 21 20 4 38 38 H 1.09003 * 109.47049 * 60.00296 * 21 20 4 39 39 H 1.09003 * 109.47345 * 300.00074 * 22 21 20 40 40 H 1.09000 * 109.47665 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47738 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.46969 * 59.99739 * 23 22 21 43 43 H 1.08994 * 109.47089 * 300.00072 * 24 4 3 44 44 H 1.09004 * 109.47066 * 59.99996 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 6 2.2639 1.1983 2.4693 6 8 2.3205 2.0756 3.3049 7 7 1.5068 0.1053 2.6901 8 6 0.7523 -0.0231 3.9393 9 6 -0.0050 -1.3258 3.9373 10 8 0.0777 -2.0739 2.9860 11 7 -0.7742 -1.6599 4.9924 12 6 -1.4628 -2.8454 4.9906 13 1 -1.3885 -3.5118 4.1440 14 6 -2.2554 -3.1900 6.0787 15 7 -2.3454 -2.3795 7.1090 16 14 -3.1931 -4.8057 6.0767 17 1 -2.3463 -5.8702 6.6724 18 1 -4.4365 -4.6574 6.8749 19 1 -3.5419 -5.1738 4.6809 20 6 4.0245 0.1730 1.0559 21 6 4.9964 0.2013 2.2372 22 6 5.7614 1.5263 2.2365 23 6 4.7719 2.6865 2.3623 24 6 3.8004 2.6579 1.1813 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1317 0.0897 29 1 2.6212 1.4027 -0.9313 30 1 1.4614 -0.5964 2.0220 31 1 1.4416 -0.0052 4.7835 32 1 0.0499 0.8059 4.0264 33 1 -0.8407 -1.0616 5.7529 34 1 -2.8984 -2.6202 7.8687 35 1 3.4795 -0.7710 1.0559 36 1 4.5823 0.2705 0.1245 37 1 5.7016 -0.6250 2.1473 38 1 4.4389 0.1040 3.1688 39 1 6.3188 1.6236 1.3049 40 1 6.4535 1.5467 3.0783 41 1 5.3168 3.6305 2.3615 42 1 4.2145 2.5892 3.2940 43 1 4.3582 2.7550 0.2500 44 1 3.0958 3.4847 1.2707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451748355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:00 Heat of formation + Delta-G solvation = -97.027120 kcal Electronic energy + Delta-G solvation = -24792.070867 eV Core-core repulsion = 21321.970106 eV Total energy + Delta-G solvation = -3470.100762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.98778 -40.20766 -38.24645 -36.58450 -36.03134 -34.90590 -33.36718 -32.27245 -31.62490 -29.27071 -26.98294 -26.53428 -23.97606 -23.51683 -21.79388 -21.37802 -20.58788 -20.40413 -19.94827 -17.90853 -17.34015 -16.94911 -16.78618 -16.43706 -16.37157 -15.89629 -15.53701 -15.36466 -15.07407 -14.75732 -14.50889 -14.50693 -13.94827 -13.74045 -13.55441 -13.38685 -13.18635 -12.93751 -12.91664 -12.86751 -12.46250 -12.37781 -12.13642 -12.02715 -11.92971 -11.58688 -11.56534 -11.05583 -10.88335 -10.56400 -10.48135 -10.24030 -10.10080 -9.92840 -8.51530 -6.01624 1.33255 1.35510 1.41683 1.54363 1.70382 1.91148 2.11552 2.33968 3.13092 3.15608 3.57162 3.67831 3.78492 4.02251 4.10333 4.17871 4.26620 4.30050 4.37169 4.40217 4.41339 4.52277 4.57600 4.65486 4.74382 4.79286 4.95791 4.97934 5.07258 5.10844 5.15895 5.28124 5.29465 5.34425 5.38131 5.40505 5.46312 5.71236 5.74633 5.85527 5.91649 6.46645 6.63122 7.02950 7.27838 7.44486 7.93807 8.65584 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024020 B = 0.003754 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.423114 B = 7456.316055 C = 7903.423418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.172 4.172 3 C -0.075 4.075 4 C -0.063 4.063 5 C 0.520 3.480 6 O -0.575 6.575 7 N -0.706 5.706 8 C 0.117 3.883 9 C 0.435 3.565 10 O -0.617 6.617 11 N -0.561 5.561 12 C -0.336 4.336 13 H 0.087 0.913 14 C -0.011 4.011 15 N -0.918 5.918 16 Si 0.996 3.004 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.269 1.269 20 C -0.107 4.107 21 C -0.127 4.127 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.088 4.088 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.412 0.588 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.397 0.603 34 H 0.279 0.721 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.941 8.175 -13.165 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C -0.112 4.112 4 C -0.066 4.066 5 C 0.309 3.691 6 O -0.456 6.456 7 N -0.363 5.363 8 C -0.012 4.012 9 C 0.222 3.778 10 O -0.505 6.505 11 N -0.196 5.196 12 C -0.465 4.465 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.558 5.558 16 Si 0.820 3.180 17 H -0.196 1.196 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.145 4.145 21 C -0.164 4.164 22 C -0.150 4.150 23 C -0.174 4.174 24 C -0.126 4.126 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.255 0.745 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.231 0.769 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.899 8.262 -13.003 20.093 hybrid contribution -1.032 -0.853 0.882 1.604 sum 11.867 7.409 -12.121 18.510 Atomic orbital electron populations 1.23912 0.96582 1.01677 0.99688 1.23049 0.95939 0.99194 1.00815 1.20825 0.97364 0.95030 0.98026 1.20904 0.95444 0.99420 0.90876 1.21165 0.78368 0.80298 0.89312 1.90587 1.65078 1.41497 1.48403 1.46169 1.46988 1.23234 1.19894 1.20748 0.95874 0.95375 0.89166 1.20364 0.84081 0.89248 0.84142 1.90459 1.68813 1.54709 1.36479 1.41849 1.40654 1.19693 1.17446 1.19739 1.24767 0.97411 1.04567 0.89501 1.26124 0.98046 1.02677 0.94267 1.69682 1.40294 1.38369 1.07449 0.84876 0.77594 0.77054 0.78518 1.19561 1.19687 1.19369 1.21708 0.96226 0.96037 1.00481 1.21600 0.98496 0.98939 0.97392 1.21512 0.97338 0.93501 1.02601 1.21757 0.97314 0.98739 0.99542 1.21373 0.97568 0.93789 0.99846 0.88474 0.89518 0.86477 0.91377 0.86536 0.74537 0.89582 0.89464 0.76912 0.91113 0.91980 0.87467 0.90412 0.95254 0.89809 0.92365 0.91274 0.92515 0.88284 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.81 13.90 67.78 0.94 -3.86 16 2 C -0.17 -3.96 5.80 25.65 0.15 -3.81 16 3 C -0.08 -1.42 4.72 29.85 0.14 -1.28 16 4 C -0.06 -1.39 0.50 -52.93 -0.03 -1.41 16 5 C 0.52 16.25 4.93 87.66 0.43 16.68 16 6 O -0.58 -21.27 13.66 -3.04 -0.04 -21.31 16 7 N -0.71 -24.09 4.75 -466.79 -2.22 -26.31 16 8 C 0.12 4.48 6.15 85.63 0.53 5.01 16 9 C 0.43 20.41 7.85 87.66 0.69 21.10 16 10 O -0.62 -31.74 15.24 -3.08 -0.05 -31.79 16 11 N -0.56 -28.59 5.29 -306.98 -1.62 -30.21 16 12 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16 13 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 14 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 15 N -0.92 -49.25 13.05 21.66 0.28 -48.96 16 16 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 20 C -0.11 -2.03 4.38 30.59 0.13 -1.90 16 21 C -0.13 -2.67 5.70 30.59 0.17 -2.50 16 22 C -0.11 -2.05 5.92 30.59 0.18 -1.87 16 23 C -0.14 -2.96 5.63 30.58 0.17 -2.79 16 24 C -0.09 -1.71 4.37 30.58 0.13 -1.58 16 25 H 0.10 2.43 7.84 -2.91 -0.02 2.40 16 26 H 0.09 2.58 8.06 -2.91 -0.02 2.55 16 27 H 0.12 2.63 6.68 -2.91 -0.02 2.61 16 28 H 0.07 1.36 7.79 -2.39 -0.02 1.34 16 29 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.41 14.02 3.85 -92.71 -0.36 13.66 16 31 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 32 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 34 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.06 1.30 5.98 -2.39 -0.01 1.29 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.03 0.81 7.22 -2.39 -0.02 0.79 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.68 5.51 -2.39 -0.01 1.66 16 43 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 1.23 8.10 -2.38 -0.02 1.21 16 Total: -1.00 -65.00 345.58 3.23 -61.77 By element: Atomic # 1 Polarization: 49.00 SS G_CDS: -0.08 Total: 48.92 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 4.93 Total: 3.93 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -3.56 Total: -105.49 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -0.09 Total: -53.10 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -65.00 3.23 -61.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451748355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.258 kcal (2) G-P(sol) polarization free energy of solvation -64.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds