Wall clock time and date at job start Tue Mar 31 2020 06:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 C 1.50706 * 109.47228 * 179.97438 * 3 2 1 5 5 C 1.35311 * 126.66450 * 90.28743 * 4 3 2 6 6 C 1.42271 * 103.92043 * 180.09264 * 5 4 3 7 7 C 1.48334 * 126.93784 * 179.91390 * 6 5 4 8 8 O 1.21503 * 120.00080 * 359.70105 * 7 6 5 9 9 N 1.34777 * 120.00028 * 179.70657 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27546 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 C 1.53010 * 109.47146 * 299.99645 * 11 10 9 13 13 C 1.53000 * 109.47166 * 59.99736 * 11 10 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 11 10 9 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 11 10 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 11 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47172 * 90.00092 * 19 17 15 21 21 H 1.48503 * 109.46928 * 209.99961 * 19 17 15 22 22 H 1.48499 * 109.46876 * 329.99803 * 19 17 15 23 23 N 1.30978 * 106.12479 * 359.64516 * 6 5 4 24 24 O 1.20908 * 111.43902 * 0.22643 * 23 6 5 25 25 H 1.09005 * 109.47060 * 59.99850 * 1 2 3 26 26 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47289 * 300.00098 * 1 2 3 28 28 H 1.08997 * 109.47289 * 239.99902 * 2 1 3 29 29 H 1.09005 * 109.47060 * 120.00150 * 2 1 3 30 30 H 1.09005 * 109.46855 * 60.00017 * 3 2 1 31 31 H 1.08992 * 109.46878 * 300.00190 * 3 2 1 32 32 H 1.07999 * 128.03814 * 359.96473 * 5 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 35 35 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 36 36 H 1.09003 * 109.46863 * 59.99870 * 12 11 10 37 37 H 1.09001 * 109.47172 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.46753 * 300.00454 * 12 11 10 39 39 H 1.08990 * 109.47258 * 60.00092 * 13 11 10 40 40 H 1.09001 * 109.46739 * 180.02562 * 13 11 10 41 41 H 1.08999 * 109.47407 * 299.99599 * 13 11 10 42 42 H 1.08990 * 109.47021 * 299.99845 * 14 11 10 43 43 H 1.09002 * 109.46620 * 60.00037 * 14 11 10 44 44 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3555 1.4477 -1.0844 6 6 5.6674 1.4428 -0.5338 7 6 6.9481 1.4437 -1.2821 8 8 6.9419 1.4436 -2.4971 9 7 8.1188 1.4444 -0.6142 10 6 9.3837 1.4514 -1.3532 11 6 10.5517 1.4578 -0.3650 12 6 10.4683 2.7067 0.5150 13 6 10.4820 0.2082 0.5150 14 6 11.8728 1.4645 -1.1368 15 6 13.0232 1.4714 -0.1634 16 1 12.8313 1.4707 0.8994 17 6 14.3207 1.4776 -0.6296 18 7 14.5544 1.4780 -1.9239 19 14 15.7468 1.4855 0.5770 20 1 16.1317 0.0876 0.8975 21 1 16.9043 2.1910 -0.0294 22 1 15.3380 2.1843 1.8219 23 7 5.5158 1.4432 0.7672 24 8 4.3469 1.4430 1.0759 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8899 32 1 4.0710 1.4523 -2.1262 33 1 8.1237 1.4448 0.3558 34 1 9.4431 0.5617 -1.9802 35 1 9.4334 2.3416 -1.9802 36 1 9.5271 2.7016 1.0649 37 1 11.3002 2.7110 1.2194 38 1 10.5179 3.5969 -0.1120 39 1 10.5414 -0.6814 -0.1118 40 1 11.3139 0.2130 1.2193 41 1 9.5409 0.2030 1.0649 42 1 11.9319 0.5747 -1.7634 43 1 11.9226 2.3546 -1.7640 44 1 15.4672 1.4820 -2.2519 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451781010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:13 Heat of formation + Delta-G solvation = -26.857497 kcal Electronic energy + Delta-G solvation = -23181.466003 eV Core-core repulsion = 19714.408025 eV Total energy + Delta-G solvation = -3467.057979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.20000 -40.99516 -38.76185 -36.60518 -35.45882 -34.97838 -33.95708 -32.60222 -29.22283 -28.16627 -28.04150 -27.92315 -25.83796 -24.45334 -23.76569 -22.53620 -21.25296 -19.91322 -18.89683 -18.58893 -18.36696 -17.96523 -16.96458 -16.53580 -16.45246 -15.98433 -15.70015 -15.22661 -15.01893 -14.78871 -14.58237 -14.39364 -14.13250 -13.98200 -13.88024 -13.32795 -12.91256 -12.75657 -12.67008 -12.53441 -12.46031 -12.38897 -12.27318 -12.14965 -12.02567 -11.65358 -11.62649 -11.59946 -11.50081 -11.03245 -10.90457 -10.52536 -10.45769 -10.28674 -8.15284 -6.23015 -0.01310 0.62160 1.41827 1.42143 1.52587 1.75558 1.96723 2.01719 2.43338 2.82675 3.19003 3.44322 3.85078 3.87861 3.99854 4.06279 4.12131 4.14637 4.15728 4.29330 4.60750 4.63335 4.63399 4.69382 4.81350 4.83519 4.87772 4.93601 4.98459 5.00300 5.05777 5.21309 5.31099 5.34257 5.37739 5.44521 5.46135 5.51230 5.52809 5.74572 5.87381 6.20939 6.30233 6.83878 6.91245 6.99364 7.44458 8.97035 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043612 B = 0.002481 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.869136 B =11285.056397 C =11587.168882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.036 4.036 4 C -0.010 4.010 5 C -0.192 4.192 6 C -0.045 4.045 7 C 0.591 3.409 8 O -0.560 6.560 9 N -0.695 5.695 10 C 0.138 3.862 11 C -0.065 4.065 12 C -0.123 4.123 13 C -0.123 4.123 14 C 0.042 3.958 15 C -0.515 4.515 16 H 0.071 0.929 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.261 1.261 23 N -0.346 5.346 24 O 0.130 5.870 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.192 0.808 33 H 0.413 0.587 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.060 0.940 42 H -0.010 1.010 43 H -0.010 1.010 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.165 -0.706 7.227 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.074 4.074 4 C -0.074 4.074 5 C -0.215 4.215 6 C -0.203 4.203 7 C 0.376 3.624 8 O -0.438 6.438 9 N -0.347 5.347 10 C 0.015 3.985 11 C -0.065 4.065 12 C -0.180 4.180 13 C -0.181 4.181 14 C 0.004 3.996 15 C -0.553 4.553 16 H 0.089 0.911 17 C -0.202 4.202 18 N -0.577 5.577 19 Si 0.785 3.215 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.185 1.185 23 N -0.045 5.045 24 O 0.052 5.948 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.209 0.791 33 H 0.251 0.749 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.008 0.992 43 H 0.008 0.992 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -28.060 -0.702 7.238 28.987 hybrid contribution 1.205 -0.054 -0.442 1.284 sum -26.856 -0.756 6.797 27.713 Atomic orbital electron populations 1.21750 0.93727 1.02424 1.02878 1.21560 0.97255 0.94628 1.02695 1.20530 0.80131 0.99623 1.07083 1.25110 0.97447 1.00800 0.84003 1.22654 0.88709 1.07376 1.02758 1.23394 0.96693 1.09493 0.90687 1.17234 0.82456 0.76550 0.86210 1.90775 1.87380 1.51686 1.13966 1.45931 1.04928 1.72567 1.11293 1.21421 0.81513 1.01204 0.94354 1.20728 0.93449 0.96959 0.95382 1.21709 1.01177 0.95984 0.99170 1.21707 1.01206 0.95963 0.99176 1.18955 0.91354 0.94716 0.94576 1.21569 0.91041 1.48930 0.93750 0.91074 1.25946 1.02126 0.95454 0.96682 1.70113 1.20821 1.52430 1.14385 0.85529 0.78562 0.78214 0.79232 1.20158 1.21471 1.18503 1.74181 0.98330 1.16684 1.15301 1.84749 1.10706 1.65210 1.34108 0.91702 0.92425 0.91610 0.91884 0.91838 0.87091 0.86153 0.79101 0.74894 0.92454 0.92447 0.92104 0.92225 0.93975 0.93989 0.92189 0.92108 0.99178 0.99164 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 71.98 0.71 0.04 16 2 C -0.12 -0.85 5.92 30.59 0.18 -0.66 16 3 C -0.04 -0.23 5.78 29.85 0.17 -0.05 16 4 C -0.01 -0.16 6.73 25.01 0.17 0.01 16 5 C -0.19 -3.87 10.92 22.60 0.25 -3.62 16 6 C -0.05 -1.21 7.19 42.96 0.31 -0.90 16 7 C 0.59 19.53 7.85 86.93 0.68 20.21 16 8 O -0.56 -21.93 16.95 -3.73 -0.06 -22.00 16 9 N -0.70 -22.18 4.96 -465.50 -2.31 -24.49 16 10 C 0.14 5.15 4.56 86.38 0.39 5.54 16 11 C -0.06 -2.54 0.54 -52.18 -0.03 -2.57 16 12 C -0.12 -4.40 8.05 71.99 0.58 -3.82 16 13 C -0.12 -4.40 8.05 71.98 0.58 -3.82 16 14 C 0.04 2.13 4.04 29.85 0.12 2.25 16 15 C -0.51 -27.84 7.65 25.60 0.20 -27.65 16 16 H 0.07 3.62 5.68 -2.91 -0.02 3.61 16 17 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 18 N -0.94 -57.02 13.29 21.45 0.28 -56.74 16 19 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 N -0.35 -8.61 11.84 -49.52 -0.59 -9.20 16 24 O 0.13 2.55 11.18 71.91 0.80 3.36 16 25 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 26 H 0.06 0.29 8.14 -2.39 -0.02 0.28 16 27 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.41 11.75 5.92 -92.71 -0.55 11.20 16 34 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 37 H 0.06 2.25 6.62 -2.39 -0.02 2.23 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 2.25 6.62 -2.39 -0.02 2.24 16 41 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -69.05 362.49 5.38 -63.67 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.44 Total: 14.28 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.78 Total: -14.87 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -2.61 Total: -90.43 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.74 Total: -18.64 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.05 5.38 -63.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451781010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.815 kcal (2) G-P(sol) polarization free energy of solvation -69.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds