Wall clock time and date at job start Tue Mar 31 2020 07:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47418 * 2 1 4 4 C 1.53002 * 109.47042 * 239.99970 * 2 1 3 5 5 O 1.45201 * 109.47157 * 120.00116 * 2 1 3 6 6 C 1.34225 * 117.00484 * 59.99948 * 5 2 1 7 7 O 1.20829 * 119.99769 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00241 * 180.02562 * 6 5 2 9 9 C 1.53514 * 114.16850 * 179.97438 * 8 6 5 10 10 N 1.47482 * 87.93303 * 139.67122 * 9 8 6 11 11 C 1.46900 * 110.99836 * 221.29750 * 10 9 8 12 12 C 1.52997 * 109.47171 * 169.99677 * 11 10 9 13 13 H 1.09000 * 109.47140 * 305.00052 * 12 11 10 14 14 C 1.47206 * 109.47080 * 64.99999 * 12 11 10 15 15 N 9.12909 * 113.32769 * 140.36608 * 2 1 3 16 16 C 1.53002 * 109.47415 * 185.00028 * 12 11 10 17 17 C 1.50699 * 109.47425 * 175.00239 * 16 12 11 18 18 H 1.08002 * 119.99621 * 359.97438 * 17 16 12 19 19 C 1.37872 * 120.00042 * 180.02562 * 17 16 12 20 20 N 1.31510 * 120.00120 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99904 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47562 * 119.99672 * 21 19 17 24 24 H 1.48501 * 109.47008 * 239.99944 * 21 19 17 25 25 C 1.47480 * 87.83122 * 332.98653 * 10 9 8 26 26 H 1.09006 * 109.46914 * 300.00129 * 1 2 3 27 27 H 1.08998 * 109.47687 * 59.99804 * 1 2 3 28 28 H 1.09000 * 109.47687 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47635 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47143 * 300.00142 * 3 2 1 31 31 H 1.08999 * 109.47372 * 59.99696 * 3 2 1 32 32 H 1.09001 * 109.46896 * 299.99515 * 4 2 1 33 33 H 1.08993 * 109.47250 * 60.00058 * 4 2 1 34 34 H 1.09006 * 109.47253 * 180.02562 * 4 2 1 35 35 H 1.09001 * 113.25953 * 47.04951 * 8 6 5 36 36 H 1.08996 * 113.48097 * 24.90180 * 9 8 6 37 37 H 1.09008 * 113.53220 * 254.44351 * 9 8 6 38 38 H 1.09001 * 109.47612 * 49.99507 * 11 10 9 39 39 H 1.08998 * 109.47323 * 289.99800 * 11 10 9 40 40 H 1.09006 * 109.46551 * 294.99831 * 16 12 11 41 41 H 1.09000 * 109.47059 * 54.99917 * 16 12 11 42 42 H 0.97003 * 120.00093 * 180.02562 * 20 19 17 43 43 H 1.09005 * 113.47140 * 141.78280 * 25 10 9 44 44 H 1.08998 * 113.47767 * 272.24184 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3379 7 8 0.9559 -2.5025 0.5083 8 6 2.1173 -2.7433 2.5442 9 6 1.6269 -4.1975 2.5839 10 7 2.9630 -4.5785 3.0786 11 6 3.4259 -5.8190 2.4423 12 6 4.8993 -6.0486 2.7844 13 1 5.4796 -5.1711 2.4992 14 6 5.0368 -6.2786 4.2319 15 7 5.1449 -6.4559 5.3472 16 6 5.4153 -7.2710 2.0226 17 6 6.8950 -7.4250 2.2630 18 1 7.4154 -6.7212 2.8956 19 6 7.5846 -8.4638 1.6745 20 7 6.9510 -9.3206 0.9038 21 14 9.4186 -8.6551 1.9732 22 1 9.8898 -7.5701 2.8710 23 1 9.6824 -9.9720 2.6067 24 1 10.1419 -8.5748 0.6787 25 6 3.4976 -3.3948 2.3799 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2491 35 1 1.9842 -2.2020 3.4809 36 1 1.3958 -4.6049 1.5997 37 1 0.8306 -4.3686 3.3084 38 1 3.3124 -5.7372 1.3613 39 1 2.8331 -6.6577 2.8073 40 1 4.8956 -8.1631 2.3723 41 1 5.2323 -7.1384 0.9562 42 1 7.4361 -10.0517 0.4901 43 1 4.2871 -2.8846 2.9319 44 1 3.7658 -3.5880 1.3412 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453034878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:22 Heat of formation + Delta-G solvation = -37.548221 kcal Electronic energy + Delta-G solvation = -23593.177081 eV Core-core repulsion = 20125.655517 eV Total energy + Delta-G solvation = -3467.521563 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42689 -39.89142 -37.13290 -36.28183 -34.33831 -33.84030 -32.31986 -29.68205 -27.72039 -27.68453 -26.56906 -26.02362 -24.15138 -22.09050 -21.72243 -20.30729 -19.54271 -17.72865 -16.93476 -16.72186 -16.44970 -16.24047 -15.60543 -15.18378 -14.68610 -14.56522 -14.19880 -13.86717 -13.77260 -13.14133 -12.91953 -12.83664 -12.70619 -12.48396 -12.39280 -12.22877 -12.20133 -12.02131 -11.87566 -11.73711 -11.44093 -11.34773 -11.12073 -10.98137 -10.92794 -10.66322 -10.64457 -10.50452 -10.23011 -10.14171 -9.56184 -9.22938 -8.96678 -8.47497 -6.11293 -4.14595 1.98670 2.41132 3.27485 3.35850 3.40401 3.70821 3.78708 3.87914 4.09013 4.38573 4.39569 4.45140 4.48175 4.60641 4.77986 4.84992 4.98697 5.13101 5.16584 5.23363 5.26938 5.37670 5.39610 5.42303 5.51191 5.53350 5.55758 5.58606 5.64747 5.69517 5.84944 5.91434 5.94221 6.00068 6.13394 6.31371 6.41198 6.46824 6.95389 7.39598 7.49990 7.63362 7.83907 8.20837 8.55201 8.90294 9.51145 10.99629 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.003048 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.826879 B = 9183.078679 C = 9762.206291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.347 6.347 6 C 0.477 3.523 7 O -0.501 6.501 8 C -0.121 4.121 9 C 0.020 3.980 10 N -0.470 5.470 11 C 0.026 3.974 12 C 0.012 3.988 13 H 0.099 0.901 14 C 0.254 3.746 15 N -0.476 5.476 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.282 1.282 25 C 0.017 3.983 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.037 0.963 42 H 0.262 0.738 43 H 0.100 0.900 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.313 20.145 -4.419 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.265 6.265 6 C 0.320 3.680 7 O -0.389 6.389 8 C -0.141 4.141 9 C -0.109 4.109 10 N -0.192 5.192 11 C -0.103 4.103 12 C -0.009 4.009 13 H 0.117 0.883 14 C -0.063 4.063 15 N -0.153 5.153 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.112 4.112 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.198 19.449 -2.403 23.627 hybrid contribution 0.853 -0.106 -1.355 1.605 sum -12.345 19.343 -3.758 23.252 Atomic orbital electron populations 1.22487 0.94081 1.04749 1.02660 1.22198 0.94339 0.92350 0.83205 1.21852 1.02404 0.92585 1.02960 1.22498 1.01951 1.03162 0.96511 1.86574 1.69651 1.25297 1.44942 1.23391 0.76992 0.80453 0.87175 1.90580 1.35184 1.69946 1.43152 1.22746 0.99975 0.95296 0.96063 1.23789 0.94703 0.90773 1.01638 1.69090 1.03398 1.01666 1.45072 1.22842 0.96155 0.93234 0.98051 1.19156 0.94683 1.03717 0.83390 0.88306 1.28769 0.91476 0.91530 0.94518 1.80922 1.10133 1.10596 1.13635 1.19189 0.96425 0.89976 0.95189 1.21167 0.93190 1.12147 1.29908 0.92425 1.24955 0.98522 0.95606 0.94904 1.69946 1.36058 1.15380 1.31596 0.86534 0.85302 0.78204 0.78043 1.19644 1.20940 1.20850 1.23788 0.95185 0.92327 0.99859 0.92057 0.91091 0.89766 0.91320 0.90417 0.91508 0.89733 0.91091 0.91762 0.84829 0.89409 0.88784 0.91763 0.89526 0.95476 0.94449 0.92824 0.88201 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 8.37 37.15 0.31 -1.20 16 2 C 0.11 1.01 1.13 -90.63 -0.10 0.91 16 3 C -0.14 -0.92 8.85 37.15 0.33 -0.59 16 4 C -0.18 -1.64 8.37 37.16 0.31 -1.32 16 5 O -0.35 -3.63 9.89 -39.25 -0.39 -4.02 16 6 C 0.48 5.24 6.83 36.00 0.25 5.48 16 7 O -0.50 -6.34 11.45 -18.75 -0.21 -6.55 16 8 C -0.12 -1.21 4.59 -91.24 -0.42 -1.63 16 9 C 0.02 0.22 7.06 -7.55 -0.05 0.16 16 10 N -0.47 -6.15 6.12 -244.66 -1.50 -7.65 16 11 C 0.03 0.39 4.19 -3.83 -0.02 0.37 16 12 C 0.01 0.23 2.26 -93.40 -0.21 0.02 16 13 H 0.10 1.69 7.55 -51.93 -0.39 1.30 16 14 C 0.25 5.32 13.66 -20.81 -0.28 5.03 16 15 N -0.48 -10.83 18.53 42.10 0.78 -10.05 16 16 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 17 C -0.53 -13.97 8.60 -34.44 -0.30 -14.26 16 18 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.02 0.19 6.50 -7.56 -0.05 0.15 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.86 5.89 -51.93 -0.31 0.55 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.92 5.89 -51.93 -0.31 0.62 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.00 7.08 -51.93 -0.37 0.63 16 37 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.06 0.87 7.56 -51.93 -0.39 0.48 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.08 0.90 7.66 -51.93 -0.40 0.50 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -31.08 363.78 -7.77 -38.85 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -7.19 Total: -2.90 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.45 Total: -4.68 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.02 Total: -42.43 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.60 Total: -10.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.08 -7.77 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453034878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.301 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds