Wall clock time and date at job start Tue Mar 31 2020 07:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47418 * 2 1 4 4 C 1.53002 * 109.47042 * 239.99970 * 2 1 3 5 5 O 1.45201 * 109.47157 * 120.00116 * 2 1 3 6 6 C 1.34225 * 117.00484 * 59.99948 * 5 2 1 7 7 O 1.20829 * 119.99769 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00241 * 180.02562 * 6 5 2 9 9 C 1.53514 * 114.16850 * 179.97438 * 8 6 5 10 10 N 1.47482 * 87.93303 * 139.67122 * 9 8 6 11 11 C 1.46900 * 110.99836 * 221.29750 * 10 9 8 12 12 C 1.52997 * 109.47171 * 169.99677 * 11 10 9 13 13 H 1.09000 * 109.47140 * 305.00052 * 12 11 10 14 14 C 1.47206 * 109.47080 * 64.99999 * 12 11 10 15 15 N 9.12909 * 113.32769 * 140.36608 * 2 1 3 16 16 C 1.53002 * 109.47415 * 185.00028 * 12 11 10 17 17 C 1.50699 * 109.47425 * 175.00239 * 16 12 11 18 18 H 1.08002 * 119.99621 * 359.97438 * 17 16 12 19 19 C 1.37872 * 120.00042 * 180.02562 * 17 16 12 20 20 N 1.31510 * 120.00120 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99904 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47562 * 119.99672 * 21 19 17 24 24 H 1.48501 * 109.47008 * 239.99944 * 21 19 17 25 25 C 1.47480 * 87.83122 * 332.98653 * 10 9 8 26 26 H 1.09006 * 109.46914 * 300.00129 * 1 2 3 27 27 H 1.08998 * 109.47687 * 59.99804 * 1 2 3 28 28 H 1.09000 * 109.47687 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47635 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47143 * 300.00142 * 3 2 1 31 31 H 1.08999 * 109.47372 * 59.99696 * 3 2 1 32 32 H 1.09001 * 109.46896 * 299.99515 * 4 2 1 33 33 H 1.08993 * 109.47250 * 60.00058 * 4 2 1 34 34 H 1.09006 * 109.47253 * 180.02562 * 4 2 1 35 35 H 1.09001 * 113.25953 * 47.04951 * 8 6 5 36 36 H 1.08996 * 113.48097 * 24.90180 * 9 8 6 37 37 H 1.09008 * 113.53220 * 254.44351 * 9 8 6 38 38 H 1.09001 * 109.47612 * 49.99507 * 11 10 9 39 39 H 1.08998 * 109.47323 * 289.99800 * 11 10 9 40 40 H 1.09006 * 109.46551 * 294.99831 * 16 12 11 41 41 H 1.09000 * 109.47059 * 54.99917 * 16 12 11 42 42 H 0.97003 * 120.00093 * 180.02562 * 20 19 17 43 43 H 1.09005 * 113.47140 * 141.78280 * 25 10 9 44 44 H 1.08998 * 113.47767 * 272.24184 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6533 -1.9684 1.3379 7 8 0.9559 -2.5025 0.5083 8 6 2.1173 -2.7433 2.5442 9 6 1.6269 -4.1975 2.5839 10 7 2.9630 -4.5785 3.0786 11 6 3.4259 -5.8190 2.4423 12 6 4.8993 -6.0486 2.7844 13 1 5.4796 -5.1711 2.4992 14 6 5.0368 -6.2786 4.2319 15 7 5.1449 -6.4559 5.3472 16 6 5.4153 -7.2710 2.0226 17 6 6.8950 -7.4250 2.2630 18 1 7.4154 -6.7212 2.8956 19 6 7.5846 -8.4638 1.6745 20 7 6.9510 -9.3206 0.9038 21 14 9.4186 -8.6551 1.9732 22 1 9.8898 -7.5701 2.8710 23 1 9.6824 -9.9720 2.6067 24 1 10.1419 -8.5748 0.6787 25 6 3.4976 -3.3948 2.3799 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2491 35 1 1.9842 -2.2020 3.4809 36 1 1.3958 -4.6049 1.5997 37 1 0.8306 -4.3686 3.3084 38 1 3.3124 -5.7372 1.3613 39 1 2.8331 -6.6577 2.8073 40 1 4.8956 -8.1631 2.3723 41 1 5.2323 -7.1384 0.9562 42 1 7.4361 -10.0517 0.4901 43 1 4.2871 -2.8846 2.9319 44 1 3.7658 -3.5880 1.3412 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453034878.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:22 Heat of formation + Delta-G solvation = -56.219464 kcal Electronic energy + Delta-G solvation = -23593.986726 eV Core-core repulsion = 20125.655517 eV Total energy + Delta-G solvation = -3468.331209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.28403 -40.80124 -38.21582 -37.65891 -35.65867 -35.03545 -34.07608 -31.01609 -28.35103 -28.27028 -28.11120 -26.94710 -25.45569 -23.64811 -22.99679 -21.13142 -20.36335 -18.77979 -18.32012 -18.24850 -17.52633 -17.20984 -16.63277 -16.44073 -16.08730 -15.47971 -15.30745 -15.05691 -14.58903 -14.52699 -14.35019 -13.98539 -13.81439 -13.56823 -13.36887 -13.24206 -13.16608 -13.06815 -12.93568 -12.90338 -12.83448 -12.54334 -12.50429 -12.37391 -12.13424 -12.05085 -11.96446 -11.61174 -11.39105 -11.36162 -11.13362 -10.91997 -10.56979 -9.96609 -8.20581 -6.29037 1.14664 1.38779 1.41951 1.52347 1.65747 2.04506 2.10953 2.40856 2.91668 3.14924 3.22397 3.30479 3.65744 3.76978 3.82354 3.88752 3.97035 3.99787 4.16038 4.30457 4.45375 4.60104 4.61992 4.62892 4.67617 4.74244 4.79083 4.80438 4.84172 4.90577 4.91032 4.93289 5.03267 5.15511 5.25176 5.28776 5.32313 5.44721 5.56532 5.59734 5.77094 5.91116 6.18723 6.81394 6.81927 6.90449 7.39847 8.90569 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.003048 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.826879 B = 9183.078679 C = 9762.206291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.352 6.352 6 C 0.479 3.521 7 O -0.520 6.520 8 C -0.108 4.108 9 C 0.022 3.978 10 N -0.484 5.484 11 C 0.036 3.964 12 C 0.024 3.976 13 H 0.117 0.883 14 C 0.265 3.735 15 N -0.509 5.509 16 C 0.037 3.963 17 C -0.538 4.538 18 H 0.055 0.945 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.949 3.051 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.015 3.985 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.151 0.849 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.002 0.998 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.107 0.893 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.319 22.094 -4.645 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.069 3.931 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.270 6.270 6 C 0.322 3.678 7 O -0.409 6.409 8 C -0.128 4.128 9 C -0.106 4.106 10 N -0.206 5.206 11 C -0.093 4.093 12 C 0.002 3.998 13 H 0.134 0.866 14 C -0.052 4.052 15 N -0.187 5.187 16 C -0.002 4.002 17 C -0.576 4.576 18 H 0.073 0.927 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.775 3.225 22 H -0.193 1.193 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.114 4.114 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.169 0.831 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.020 0.980 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.126 0.874 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.204 21.419 -2.625 25.299 hybrid contribution 0.819 -0.676 -1.313 1.688 sum -12.385 20.743 -3.938 24.478 Atomic orbital electron populations 1.22452 0.93757 1.03619 1.03804 1.22491 0.94753 0.93359 0.82469 1.21874 1.02364 0.91032 1.04158 1.22476 1.01805 1.02087 0.97560 1.86569 1.69632 1.24978 1.45782 1.23502 0.76589 0.80664 0.87036 1.90588 1.36113 1.70386 1.43848 1.22694 0.98809 0.94829 0.96465 1.23792 0.93926 0.91289 1.01633 1.69078 1.04830 1.01291 1.45376 1.22674 0.93415 0.94314 0.98903 1.19085 0.97398 1.02106 0.81216 0.86551 1.29224 0.90395 0.90605 0.94954 1.80920 1.11437 1.11535 1.14772 1.19006 0.94641 0.91033 0.95493 1.21565 0.94998 1.11817 1.29239 0.92705 1.25721 1.02536 0.95606 0.94943 1.70038 1.37603 1.16035 1.32679 0.85631 0.80754 0.77878 0.78247 1.19262 1.21140 1.19795 1.23855 0.96057 0.91644 0.99844 0.91570 0.89319 0.91949 0.91400 0.88465 0.91087 0.92017 0.89290 0.91914 0.83100 0.89847 0.87690 0.90475 0.89981 0.97978 0.94743 0.92699 0.87433 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 8.37 71.98 0.60 -2.09 16 2 C 0.10 1.67 1.13 -10.80 -0.01 1.66 16 3 C -0.14 -1.47 8.85 71.98 0.64 -0.83 16 4 C -0.18 -3.03 8.37 71.98 0.60 -2.42 16 5 O -0.35 -6.86 9.89 -51.37 -0.51 -7.37 16 6 C 0.48 9.95 6.83 71.23 0.49 10.43 16 7 O -0.52 -12.89 11.45 21.96 0.25 -12.64 16 8 C -0.11 -1.98 4.59 -11.20 -0.05 -2.03 16 9 C 0.02 0.45 7.06 83.57 0.59 1.04 16 10 N -0.48 -11.89 6.12 -927.96 -5.67 -17.57 16 11 C 0.04 1.04 4.19 86.30 0.36 1.40 16 12 C 0.02 0.85 2.26 -12.60 -0.03 0.82 16 13 H 0.12 3.80 7.55 -2.39 -0.02 3.78 16 14 C 0.26 10.92 13.66 89.46 1.22 12.14 16 15 N -0.51 -22.98 18.53 19.99 0.37 -22.61 16 16 C 0.04 1.71 4.42 29.85 0.13 1.84 16 17 C -0.54 -28.49 8.60 25.60 0.22 -28.27 16 18 H 0.05 2.88 7.59 -2.91 -0.02 2.85 16 19 C 0.01 0.60 5.46 84.65 0.46 1.06 16 20 N -0.92 -53.10 13.29 21.44 0.28 -52.82 16 21 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 C 0.01 0.30 6.50 83.57 0.54 0.85 16 26 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.24 5.89 -2.39 -0.01 1.22 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.33 5.89 -2.39 -0.01 1.31 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 1.80 7.08 -2.39 -0.02 1.79 16 37 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.08 2.00 7.56 -2.39 -0.02 1.98 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 41 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.08 1.69 7.66 -2.39 -0.02 1.67 16 Total: -1.00 -65.94 363.78 3.49 -62.44 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.98 Total: 9.53 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.77 Total: -4.41 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -5.02 Total: -93.00 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.26 Total: -20.01 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -65.94 3.49 -62.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453034878.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.224 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds